RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 ATP5L2Q7Z4Y8 100 aa9.86□□□□□ -0.83
CCDC88A-207ENST00000436346 TSKUQ8WUA8 353 aa9.86□□□□□ -0.83
CCDC88A-207ENST00000436346 ZNF138P52744 262 aa9.85□□□□□ -0.83
CCDC88A-207ENST00000436346 CHCHD1Q96BP2 118 aaKnown RBP9.85□□□□□ -0.83
CCDC88A-207ENST00000436346 RPL23P62829 140 aaKnown RBP9.85□□□□□ -0.83
CCDC88A-207ENST00000436346 NIT1Q86X76 327 aa9.85□□□□□ -0.83
CCDC88A-207ENST00000436346 NABP1Q96AH0 204 aa9.85□□□□□ -0.83
CCDC88A-207ENST00000436346 FNDC4Q9H6D8 234 aaPredicted RBP9.85□□□□□ -0.83
CCDC88A-207ENST00000436346 SS18Q15532 418 aa9.85□□□□□ -0.83
CCDC88A-207ENST00000436346 MSRB2Q9Y3D2 182 aa9.85□□□□□ -0.83
CCDC88A-207ENST00000436346 OOSP1A8MZH6 123 aa9.85□□□□□ -0.83
CCDC88A-207ENST00000436346 MSMBP08118 114 aa9.85□□□□□ -0.83
CCDC88A-207ENST00000436346 A0A1W2PRE2 83 aa9.85□□□□□ -0.83
CCDC88A-207ENST00000436346 CRYGSP22914 178 aa9.85□□□□□ -0.83
CCDC88A-207ENST00000436346 GATA3P23771 443 aa9.85□□□□□ -0.83
CCDC88A-207ENST00000436346 CEACAM8P31997 349 aaPredicted RBP9.85□□□□□ -0.83
CCDC88A-207ENST00000436346 TREML4Q6UXN2 200 aa9.85□□□□□ -0.83
CCDC88A-207ENST00000436346 C14orf178Q8N769 122 aaPredicted RBP9.85□□□□□ -0.83
CCDC88A-207ENST00000436346 PRR31Q5SQ13 230 aa9.85□□□□□ -0.83
CCDC88A-207ENST00000436346 SP5Q6BEB4 398 aaPredicted RBP9.85□□□□□ -0.83
CCDC88A-207ENST00000436346 CSTL1Q9H114 145 aa9.84□□□□□ -0.83
CCDC88A-207ENST00000436346 TRAV3A0A0B4J244 114 aa9.84□□□□□ -0.83
CCDC88A-207ENST00000436346 NAPSAO96009 420 aa9.84□□□□□ -0.83
CCDC88A-207ENST00000436346 TOMM40O96008 361 aa9.84□□□□□ -0.83
CCDC88A-207ENST00000436346 ZNF319Q9P2F9 582 aa9.84□□□□□ -0.83
CCDC88A-207ENST00000436346 TRAV8-4A0A0B4J246 113 aa9.84□□□□□ -0.83
CCDC88A-207ENST00000436346 SH2D1AO60880 128 aa9.84□□□□□ -0.83
CCDC88A-207ENST00000436346 DAD1P61803 113 aa9.84□□□□□ -0.83
CCDC88A-207ENST00000436346 FAM110DQ8TAY7 271 aaPredicted RBP9.84□□□□□ -0.83
CCDC88A-207ENST00000436346 SIGLEC9Q9Y336 463 aa9.84□□□□□ -0.83
CCDC88A-207ENST00000436346 LYPD2Q6UXB3 125 aa9.84□□□□□ -0.83
CCDC88A-207ENST00000436346 DERL1Q9BUN8 251 aa9.84□□□□□ -0.83
CCDC88A-207ENST00000436346 DMRTA1Q5VZB9 504 aa9.84□□□□□ -0.83
CCDC88A-207ENST00000436346 NDUFS8O00217 210 aa9.83□□□□□ -0.84
CCDC88A-207ENST00000436346 IGKV1D-8A0A087WSZ0 117 aa9.83□□□□□ -0.84
CCDC88A-207ENST00000436346 A8MXK9 166 aa9.83□□□□□ -0.84
CCDC88A-207ENST00000436346 H3BUT2 72 aa9.83□□□□□ -0.84
CCDC88A-207ENST00000436346 A0A1B0GWJ7 208 aa9.83□□□□□ -0.84
CCDC88A-207ENST00000436346 LAIR2Q6ISS4 152 aa9.83□□□□□ -0.84
CCDC88A-207ENST00000436346 CARHSP1Q9Y2V2 147 aaKnown RBP9.83□□□□□ -0.84
CCDC88A-207ENST00000436346 MTURNQ8N3F0 131 aa9.83□□□□□ -0.84
CCDC88A-207ENST00000436346 PSPNO60542 156 aa9.83□□□□□ -0.84
CCDC88A-207ENST00000436346 OSTCQ9NRP0 149 aa9.83□□□□□ -0.84
CCDC88A-207ENST00000436346 APOC4P55056 127 aa9.83□□□□□ -0.84
CCDC88A-207ENST00000436346 PSG3Q16557 428 aa9.83□□□□□ -0.84
CCDC88A-207ENST00000436346 IL17RELQ6ZVW7 336 aa9.83□□□□□ -0.84
CCDC88A-207ENST00000436346 J3QRE1 110 aa9.83□□□□□ -0.84
CCDC88A-207ENST00000436346 K7ENP7 123 aa9.83□□□□□ -0.84
CCDC88A-207ENST00000436346 ATXN8Q156A1 80 aa9.83□□□□□ -0.84
CCDC88A-207ENST00000436346 PRDM13Q9H4Q3 707 aa9.83□□□□□ -0.84
CCDC88A-207ENST00000436346 USP9XQ93008 2570 aaPredicted RBP9.83□□□□□ -0.84
CCDC88A-207ENST00000436346 TRAV13-1A0A0B4J241 112 aa9.82□□□□□ -0.84
CCDC88A-207ENST00000436346 ITGB1BP1O14713 200 aa9.82□□□□□ -0.84
CCDC88A-207ENST00000436346 MBD3L1Q8WWY6 194 aa9.82□□□□□ -0.84
CCDC88A-207ENST00000436346 E9PQ18 207 aa9.82□□□□□ -0.84
CCDC88A-207ENST00000436346 NR2C2APQ86WQ0 139 aa9.82□□□□□ -0.84
CCDC88A-207ENST00000436346 ORAOV1Q8WV07 137 aa9.82□□□□□ -0.84
CCDC88A-207ENST00000436346 FOXG1P55316 489 aaPredicted RBP9.82□□□□□ -0.84
CCDC88A-207ENST00000436346 SUMO4Q6EEV6 95 aa9.82□□□□□ -0.84
CCDC88A-207ENST00000436346 C6orf226Q5I0X4 101 aa9.82□□□□□ -0.84
CCDC88A-207ENST00000436346 SPATA31B1PQ5VZV4 182 aa9.82□□□□□ -0.84
CCDC88A-207ENST00000436346 TMEM190Q8WZ59 177 aa9.82□□□□□ -0.84
CCDC88A-207ENST00000436346 IGKV1D-17A0A075B6S4 117 aa9.82□□□□□ -0.84
CCDC88A-207ENST00000436346 E7EQL1 145 aa9.82□□□□□ -0.84
CCDC88A-207ENST00000436346 GAS1P54826 345 aa9.82□□□□□ -0.84
CCDC88A-207ENST00000436346 LINC00477Q96M19 166 aa9.82□□□□□ -0.84
CCDC88A-207ENST00000436346 MBD3L4A6NDZ8 208 aaPredicted RBP9.82□□□□□ -0.84
CCDC88A-207ENST00000436346 MBD3L3A6NE82 208 aaPredicted RBP9.82□□□□□ -0.84
CCDC88A-207ENST00000436346 MBD3L5A6NJ08 208 aaPredicted RBP9.82□□□□□ -0.84
CCDC88A-207ENST00000436346 CGB7P0DN87 165 aa9.82□□□□□ -0.84
CCDC88A-207ENST00000436346 SUPT4H1P63272 117 aaKnown RBP9.82□□□□□ -0.84
CCDC88A-207ENST00000436346 ZNF876PQ49A33 203 aa9.82□□□□□ -0.84
CCDC88A-207ENST00000436346 LURAP1LQ8IV03 231 aa9.82□□□□□ -0.84
CCDC88A-207ENST00000436346 MBD3L2Q8NHZ7 208 aaPredicted RBP9.82□□□□□ -0.84
CCDC88A-207ENST00000436346 OCC1Q8TAD7 63 aa9.82□□□□□ -0.84
CCDC88A-207ENST00000436346 RNF126Q9BV68 326 aa9.82□□□□□ -0.84
CCDC88A-207ENST00000436346 F8VVB4 439 aa9.82□□□□□ -0.84
CCDC88A-207ENST00000436346 F8VWA3 439 aa9.82□□□□□ -0.84
CCDC88A-207ENST00000436346 IFI27L1Q96BM0 104 aa9.82□□□□□ -0.84
CCDC88A-207ENST00000436346 WFDC1Q9HC57 220 aa9.82□□□□□ -0.84
CCDC88A-207ENST00000436346 IGKV1-16P04430 117 aa9.81□□□□□ -0.84
CCDC88A-207ENST00000436346 FAM90A2PQ658T7 463 aa9.81□□□□□ -0.84
CCDC88A-207ENST00000436346 LYZL1Q6UWQ5 148 aa9.81□□□□□ -0.84
CCDC88A-207ENST00000436346 THAP8Q8NA92 274 aa9.81□□□□□ -0.84
CCDC88A-207ENST00000436346 LINC01619G3V211 115 aa9.81□□□□□ -0.84
CCDC88A-207ENST00000436346 MST1P26927 711 aa9.81□□□□□ -0.84
CCDC88A-207ENST00000436346 RHPN1-AS1Q9BWJ2 59 aa9.81□□□□□ -0.84
CCDC88A-207ENST00000436346 GGTLC1Q9BX51 225 aa9.81□□□□□ -0.84
CCDC88A-207ENST00000436346 SRSF3P84103 164 aaKnown RBP9.81□□□□□ -0.84
CCDC88A-207ENST00000436346 BMPERQ8N8U9 685 aa9.81□□□□□ -0.84
CCDC88A-207ENST00000436346 TRAV8-1A0A0A6YYK1 113 aa9.81□□□□□ -0.84
CCDC88A-207ENST00000436346 CLPSP04118 112 aa9.81□□□□□ -0.84
CCDC88A-207ENST00000436346 IGFL4Q6B9Z1 124 aa9.81□□□□□ -0.84
CCDC88A-207ENST00000436346 DKK1O94907 266 aa9.81□□□□□ -0.84
CCDC88A-207ENST00000436346 TCRAP04437 139 aa9.81□□□□□ -0.84
CCDC88A-207ENST00000436346 PNRC2Q9NPJ4 139 aaKnown RBP9.81□□□□□ -0.84
CCDC88A-207ENST00000436346 ZNF561-AS1K7EIQ3 104 aa9.81□□□□□ -0.84
CCDC88A-207ENST00000436346 C9orf139Q6ZV77 190 aa9.81□□□□□ -0.84
CCDC88A-207ENST00000436346 LINC00473A8K010 186 aa9.8□□□□□ -0.84
CCDC88A-207ENST00000436346 NKAPP1Q8N9T2 125 aa9.8□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms