RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 C14orf132Q9NPU4 83 aa2.79□□□□□ -1.96
CCDC88A-206ENST00000430086 RIMS1Q86UR5 1692 aaKnown RBP2.79□□□□□ -1.96
CCDC88A-206ENST00000430086 EIF4G3O43432 1585 aaKnown RBP2.78□□□□□ -1.96
CCDC88A-206ENST00000430086 TCOF1Q13428 1488 aaKnown RBP2.78□□□□□ -1.96
CCDC88A-206ENST00000430086 KDM6AO15550 1401 aaPredicted RBP2.78□□□□□ -1.96
CCDC88A-206ENST00000430086 KIAA1107Q9UPP5 1409 aa2.78□□□□□ -1.96
CCDC88A-206ENST00000430086 NUP210LQ5VU65 1888 aa2.78□□□□□ -1.96
CCDC88A-206ENST00000430086 IGF2P01344 180 aa2.78□□□□□ -1.96
CCDC88A-206ENST00000430086 HBDP02042 147 aa2.78□□□□□ -1.96
CCDC88A-206ENST00000430086 HRES1P13985 223 aa2.78□□□□□ -1.96
CCDC88A-206ENST00000430086 FABP4P15090 132 aa2.78□□□□□ -1.96
CCDC88A-206ENST00000430086 ZNF25P17030 456 aaPredicted RBP2.78□□□□□ -1.96
CCDC88A-206ENST00000430086 AKR1D1P51857 326 aa2.78□□□□□ -1.96
CCDC88A-206ENST00000430086 Q6ZQT0 140 aa2.78□□□□□ -1.96
CCDC88A-206ENST00000430086 OR8B3Q8NGG8 313 aa2.78□□□□□ -1.96
CCDC88A-206ENST00000430086 RETNLBQ9BQ08 111 aa2.78□□□□□ -1.96
CCDC88A-206ENST00000430086 TMEM191AQ9H0A3 160 aa2.78□□□□□ -1.96
CCDC88A-206ENST00000430086 CCDC167Q9P0B6 97 aa2.78□□□□□ -1.96
CCDC88A-206ENST00000430086 SOX21Q9Y651 276 aaPredicted RBP2.78□□□□□ -1.96
CCDC88A-206ENST00000430086 PLXNB1O43157 2135 aa2.78□□□□□ -1.96
CCDC88A-206ENST00000430086 DLC1Q96QB1 1528 aa2.78□□□□□ -1.97
CCDC88A-206ENST00000430086 TRAV27A0A087WT01 109 aa2.77□□□□□ -1.97
CCDC88A-206ENST00000430086 A0A1B0GVG6 124 aa2.77□□□□□ -1.97
CCDC88A-206ENST00000430086 CLPSP04118 112 aa2.77□□□□□ -1.97
CCDC88A-206ENST00000430086 BAALC-AS2P0C853 105 aa2.77□□□□□ -1.97
CCDC88A-206ENST00000430086 SAA1P0DJI8 122 aaPredicted RBP2.77□□□□□ -1.97
CCDC88A-206ENST00000430086 MGST1P10620 155 aaKnown RBP2.77□□□□□ -1.97
CCDC88A-206ENST00000430086 HLA-DRB4P13762 266 aa2.77□□□□□ -1.97
CCDC88A-206ENST00000430086 NNATQ16517 81 aa2.77□□□□□ -1.97
CCDC88A-206ENST00000430086 LINC00301Q8NCQ3 95 aa2.77□□□□□ -1.97
CCDC88A-206ENST00000430086 OR4X2Q8NGF9 303 aa2.77□□□□□ -1.97
CCDC88A-206ENST00000430086 ZNF418Q8TF45 676 aaPredicted RBP2.77□□□□□ -1.97
CCDC88A-206ENST00000430086 TPRKBQ9Y3C4 175 aa2.77□□□□□ -1.97
CCDC88A-206ENST00000430086 HLA-DRB4X5D2U9 266 aa2.77□□□□□ -1.97
CCDC88A-206ENST00000430086 LCTP09848 1927 aa2.77□□□□□ -1.97
CCDC88A-206ENST00000430086 NYNRINQ9P2P1 1898 aaKnown RBP2.77□□□□□ -1.97
CCDC88A-206ENST00000430086 SCAF11Q99590 1463 aaKnown RBP2.77□□□□□ -1.97
CCDC88A-206ENST00000430086 MYH7BA7E2Y1 1941 aa2.76□□□□□ -1.97
CCDC88A-206ENST00000430086 IGLV3-9A0A075B6K5 115 aa2.76□□□□□ -1.97
CCDC88A-206ENST00000430086 LOC107986453A0A1B0GWG9 222 aa2.76□□□□□ -1.97
CCDC88A-206ENST00000430086 BBIP1A8MTZ0 92 aa2.76□□□□□ -1.97
CCDC88A-206ENST00000430086 ZNF727A8MUV8 499 aa2.76□□□□□ -1.97
CCDC88A-206ENST00000430086 ODF3BA8MYP8 253 aa2.76□□□□□ -1.97
CCDC88A-206ENST00000430086 ZNF670-ZNF695F2Z2N8 137 aa2.76□□□□□ -1.97
CCDC88A-206ENST00000430086 OR1I1O60431 355 aa2.76□□□□□ -1.97
CCDC88A-206ENST00000430086 YPEL1O60688 119 aa2.76□□□□□ -1.97
CCDC88A-206ENST00000430086 SHBGP04278 402 aa2.76□□□□□ -1.97
CCDC88A-206ENST00000430086 SLC25A5P05141 298 aaKnown RBP2.76□□□□□ -1.97
CCDC88A-206ENST00000430086 CTSDP07339 412 aaPredicted RBP2.76□□□□□ -1.97
CCDC88A-206ENST00000430086 ZNF345Q14585 488 aa2.76□□□□□ -1.97
CCDC88A-206ENST00000430086 RNASE10Q5GAN6 216 aaKnown RBP2.76□□□□□ -1.97
CCDC88A-206ENST00000430086 ZNF826PQ6ZT77 177 aa2.76□□□□□ -1.97
CCDC88A-206ENST00000430086 OR5D14Q8NGL3 314 aa2.76□□□□□ -1.97
CCDC88A-206ENST00000430086 PKMYT1Q99640 499 aa2.76□□□□□ -1.97
CCDC88A-206ENST00000430086 UHRF1BP1LA0JNW5 1464 aa2.76□□□□□ -1.97
CCDC88A-206ENST00000430086 ARHGEF28Q8N1W1 1705 aaKnown RBP2.76□□□□□ -1.97
CCDC88A-206ENST00000430086 HIVEP2P31629 2446 aa2.76□□□□□ -1.97
CCDC88A-206ENST00000430086 TRPM1Q7Z4N2 1603 aa2.75□□□□□ -1.97
CCDC88A-206ENST00000430086 NISCHQ9Y2I1 1504 aa2.75□□□□□ -1.97
CCDC88A-206ENST00000430086 TMSB15BA0A087X1C1 80 aa2.75□□□□□ -1.97
CCDC88A-206ENST00000430086 PNMA8CA0A1B0GUJ8 204 aa2.75□□□□□ -1.97
CCDC88A-206ENST00000430086 A0A1W2PNM2 257 aa2.75□□□□□ -1.97
CCDC88A-206ENST00000430086 F6UZH7 168 aa2.75□□□□□ -1.97
CCDC88A-206ENST00000430086 CDC42EP2O14613 210 aa2.75□□□□□ -1.97
CCDC88A-206ENST00000430086 APODP05090 189 aa2.75□□□□□ -1.97
CCDC88A-206ENST00000430086 CTSGP08311 255 aa2.75□□□□□ -1.97
CCDC88A-206ENST00000430086 TMEM91Q6ZNR0 172 aa2.75□□□□□ -1.97
CCDC88A-206ENST00000430086 TEN1Q86WV5 123 aa2.75□□□□□ -1.97
CCDC88A-206ENST00000430086 ATOH7Q8N100 152 aa2.75□□□□□ -1.97
CCDC88A-206ENST00000430086 TCTEX1D1Q8N7M0 179 aa2.75□□□□□ -1.97
CCDC88A-206ENST00000430086 OR2T35Q8NGX2 323 aa2.75□□□□□ -1.97
CCDC88A-206ENST00000430086 OR4C12Q96R67 309 aa2.75□□□□□ -1.97
CCDC88A-206ENST00000430086 Q9BRP9 147 aa2.75□□□□□ -1.97
CCDC88A-206ENST00000430086 COMMD3Q9UBI1 195 aa2.75□□□□□ -1.97
CCDC88A-206ENST00000430086 FAM135BQ49AJ0 1406 aa2.75□□□□□ -1.97
CCDC88A-206ENST00000430086 TMEM2Q9UHN6 1383 aa2.74□□□□□ -1.97
CCDC88A-206ENST00000430086 KDM5CP41229 1560 aa2.74□□□□□ -1.97
CCDC88A-206ENST00000430086 PRR14LQ5THK1 2151 aa2.74□□□□□ -1.97
CCDC88A-206ENST00000430086 PTPRSQ13332 1948 aa2.74□□□□□ -1.97
CCDC88A-206ENST00000430086 FER1L6Q2WGJ9 1857 aa2.74□□□□□ -1.97
CCDC88A-206ENST00000430086 ANKRD31Q8N7Z5 1873 aa2.74□□□□□ -1.97
CCDC88A-206ENST00000430086 GRIN2AQ12879 1464 aa2.74□□□□□ -1.97
CCDC88A-206ENST00000430086 M0R233 179 aa2.74□□□□□ -1.97
CCDC88A-206ENST00000430086 RBP4P02753 201 aa2.74□□□□□ -1.97
CCDC88A-206ENST00000430086 SMIM6P0DI80 62 aa2.74□□□□□ -1.97
CCDC88A-206ENST00000430086 PLGLB1Q02325 96 aa2.74□□□□□ -1.97
CCDC88A-206ENST00000430086 DIAPH2-AS1Q14236 149 aa2.74□□□□□ -1.97
CCDC88A-206ENST00000430086 ZNF181Q2M3W8 571 aa2.74□□□□□ -1.97
CCDC88A-206ENST00000430086 OCIAD2Q56VL3 154 aa2.74□□□□□ -1.97
CCDC88A-206ENST00000430086 GLIPR1L1Q6UWM5 242 aa2.74□□□□□ -1.97
CCDC88A-206ENST00000430086 IZUMO2Q6UXV1 221 aa2.74□□□□□ -1.97
CCDC88A-206ENST00000430086 LINC00304Q8N9R0 145 aa2.74□□□□□ -1.97
CCDC88A-206ENST00000430086 POP5Q969H6 163 aaKnown RBP2.74□□□□□ -1.97
CCDC88A-206ENST00000430086 HYLS1Q96M11 299 aa2.74□□□□□ -1.97
CCDC88A-206ENST00000430086 CXCL16Q9H2A7 254 aa2.74□□□□□ -1.97
CCDC88A-206ENST00000430086 RERGLQ9H628 205 aa2.74□□□□□ -1.97
CCDC88A-206ENST00000430086 NIT2Q9NQR4 276 aa2.74□□□□□ -1.97
CCDC88A-206ENST00000430086 EML6Q6ZMW3 1958 aa2.74□□□□□ -1.97
CCDC88A-206ENST00000430086 NUP98P52948 1817 aa2.73□□□□□ -1.97
CCDC88A-206ENST00000430086 IGKV1D-42A0A075B6H8 117 aa2.73□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms