RNA–Protein interactions for RNA: ENST00000427526.6

LIG1-202, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,027 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-202ENST00000427526 LAMTOR2Q9Y2Q5 125 aa11.28□□□□□ -0.6
LIG1-202ENST00000427526 A0A1W2PPR1 153 aa11.28□□□□□ -0.6
LIG1-202ENST00000427526 CRXO43186 299 aaPredicted RBP11.28□□□□□ -0.6
LIG1-202ENST00000427526 Q56UQ5 140 aa11.28□□□□□ -0.6
LIG1-202ENST00000427526 NDFIP1Q9BT67 221 aa11.28□□□□□ -0.6
LIG1-202ENST00000427526 CACNA1AO00555 2505 aa11.28□□□□□ -0.6
LIG1-202ENST00000427526 TACC2O95359 2948 aa11.28□□□□□ -0.6
LIG1-202ENST00000427526 COL8A1P27658 744 aa11.27□□□□□ -0.6
LIG1-202ENST00000427526 HNRNPA3P51991 378 aaKnown RBP11.27□□□□□ -0.6
LIG1-202ENST00000427526 GOLT1AQ6ZVE7 132 aa11.27□□□□□ -0.6
LIG1-202ENST00000427526 CHCHD1Q96BP2 118 aaKnown RBP11.27□□□□□ -0.6
LIG1-202ENST00000427526 TRBV19A0A075B6N1 114 aa11.27□□□□□ -0.61
LIG1-202ENST00000427526 HAX1O00165 279 aa11.27□□□□□ -0.61
LIG1-202ENST00000427526 GNLYP22749 145 aa11.27□□□□□ -0.61
LIG1-202ENST00000427526 LY6G5BQ8NDX9 201 aa11.27□□□□□ -0.61
LIG1-202ENST00000427526 SHANK2-AS3Q9BTD1 123 aa11.27□□□□□ -0.61
LIG1-202ENST00000427526 RAB1BQ9H0U4 201 aa11.27□□□□□ -0.61
LIG1-202ENST00000427526 LOC102724200A0A096LPH7 203 aaPredicted RBP11.27□□□□□ -0.61
LIG1-202ENST00000427526 SH2D7A6NKC9 451 aaPredicted RBP11.27□□□□□ -0.61
LIG1-202ENST00000427526 TSPOP30536 169 aa11.27□□□□□ -0.61
LIG1-202ENST00000427526 PRNTQ86SH4 94 aa11.27□□□□□ -0.61
LIG1-202ENST00000427526 C17orf77Q96MU5 243 aa11.27□□□□□ -0.61
LIG1-202ENST00000427526 CLEC5AQ9NY25 188 aa11.27□□□□□ -0.61
LIG1-202ENST00000427526 ABCA1O95477 2261 aa11.27□□□□□ -0.61
LIG1-202ENST00000427526 TIMM23O14925 209 aa11.26□□□□□ -0.61
LIG1-202ENST00000427526 IGLL1P15814 213 aa11.26□□□□□ -0.61
LIG1-202ENST00000427526 PLGLAQ15195 96 aa11.26□□□□□ -0.61
LIG1-202ENST00000427526 Q6ZVH6 145 aa11.26□□□□□ -0.61
LIG1-202ENST00000427526 OR4C5Q8NGB2 326 aa11.26□□□□□ -0.61
LIG1-202ENST00000427526 TMEM70Q9BUB7 260 aa11.26□□□□□ -0.61
LIG1-202ENST00000427526 C1RLQ9NZP8 487 aa11.26□□□□□ -0.61
LIG1-202ENST00000427526 MRPS16Q9Y3D3 137 aaKnown RBP11.26□□□□□ -0.61
LIG1-202ENST00000427526 IGHV1-24A0A0C4DH33 117 aa11.26□□□□□ -0.61
LIG1-202ENST00000427526 H3BRN7 92 aa11.26□□□□□ -0.61
LIG1-202ENST00000427526 C11orf71Q6IPW1 123 aa11.26□□□□□ -0.61
LIG1-202ENST00000427526 TMEM190Q8WZ59 177 aa11.26□□□□□ -0.61
LIG1-202ENST00000427526 OCIAD2Q56VL3 154 aa11.25□□□□□ -0.61
LIG1-202ENST00000427526 ZNF491Q8N8L2 437 aa11.25□□□□□ -0.61
LIG1-202ENST00000427526 MRPS12O15235 138 aaKnown RBP11.25□□□□□ -0.61
LIG1-202ENST00000427526 CNIH1O95406 144 aa11.25□□□□□ -0.61
LIG1-202ENST00000427526 SIGLEC15Q6ZMC9 328 aa11.25□□□□□ -0.61
LIG1-202ENST00000427526 BPIFA4PQ86YQ2 179 aa11.25□□□□□ -0.61
LIG1-202ENST00000427526 TMEM75Q8N9X5 138 aa11.25□□□□□ -0.61
LIG1-202ENST00000427526 ZC2HC1AQ96GY0 325 aa11.25□□□□□ -0.61
LIG1-202ENST00000427526 IGHV2-70DA0A0C4DH43 119 aa11.25□□□□□ -0.61
LIG1-202ENST00000427526 TOX4O94842 621 aa11.25□□□□□ -0.61
LIG1-202ENST00000427526 LYPD1Q8N2G4 141 aa11.25□□□□□ -0.61
LIG1-202ENST00000427526 LIPFP07098 398 aa11.24□□□□□ -0.61
LIG1-202ENST00000427526 ITLN2Q8WWU7 325 aaPredicted RBP11.24□□□□□ -0.61
LIG1-202ENST00000427526 CFHR4Q92496 578 aa11.24□□□□□ -0.61
LIG1-202ENST00000427526 ONECUT1Q9UBC0 465 aa11.24□□□□□ -0.61
LIG1-202ENST00000427526 CHEK1O14757 476 aa11.24□□□□□ -0.61
LIG1-202ENST00000427526 FBLN7Q53RD9 439 aa11.24□□□□□ -0.61
LIG1-202ENST00000427526 PRSS57Q6UWY2 283 aa11.24□□□□□ -0.61
LIG1-202ENST00000427526 LINC00173Q6ZV60 143 aa11.24□□□□□ -0.61
LIG1-202ENST00000427526 OR4F17Q8NGA8 305 aa11.24□□□□□ -0.61
LIG1-202ENST00000427526 OR11H6Q8NGC7 330 aa11.24□□□□□ -0.61
LIG1-202ENST00000427526 WI2-2373I1.2A0A1W2PRP0 233 aa11.23□□□□□ -0.61
LIG1-202ENST00000427526 NBR2O15453 112 aa11.23□□□□□ -0.61
LIG1-202ENST00000427526 NPBQ8NG41 125 aa11.23□□□□□ -0.61
LIG1-202ENST00000427526 CST9LQ9H4G1 147 aa11.23□□□□□ -0.61
LIG1-202ENST00000427526 SYS1-DBNDD2H3BUS1 97 aa11.23□□□□□ -0.61
LIG1-202ENST00000427526 C19orf84I3L1E1 186 aa11.23□□□□□ -0.61
LIG1-202ENST00000427526 NDUFS7O75251 213 aa11.23□□□□□ -0.61
LIG1-202ENST00000427526 NDUFA3O95167 84 aa11.23□□□□□ -0.61
LIG1-202ENST00000427526 HTR1DP28221 377 aa11.23□□□□□ -0.61
LIG1-202ENST00000427526 RNF125Q96EQ8 232 aa11.23□□□□□ -0.61
LIG1-202ENST00000427526 ZNF414Q96IQ9 312 aa11.23□□□□□ -0.61
LIG1-202ENST00000427526 COX11Q9Y6N1 276 aa11.23□□□□□ -0.61
LIG1-202ENST00000427526 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP11.22□□□□□ -0.61
LIG1-202ENST00000427526 CRIP1P50238 77 aa11.22□□□□□ -0.61
LIG1-202ENST00000427526 PSG3Q16557 428 aa11.22□□□□□ -0.61
LIG1-202ENST00000427526 GATD1Q8NB37 220 aa11.22□□□□□ -0.61
LIG1-202ENST00000427526 DPM3Q9P2X0 92 aa11.22□□□□□ -0.61
LIG1-202ENST00000427526 LEPROTL1O95214 131 aa11.22□□□□□ -0.61
LIG1-202ENST00000427526 ZNF738Q8NE65 137 aa11.22□□□□□ -0.61
LIG1-202ENST00000427526 PSG8Q9UQ74 426 aa11.22□□□□□ -0.61
LIG1-202ENST00000427526 ARHGAP32A7KAX9 2087 aa11.22□□□□□ -0.61
LIG1-202ENST00000427526 A0A1B0GUT8 65 aa11.22□□□□□ -0.61
LIG1-202ENST00000427526 OR4C46A6NHA9 309 aa11.22□□□□□ -0.61
LIG1-202ENST00000427526 HLA-DRB1P01911 266 aa11.22□□□□□ -0.61
LIG1-202ENST00000427526 IL4P05112 153 aa11.22□□□□□ -0.61
LIG1-202ENST00000427526 HILPDAQ9Y5L2 63 aa11.22□□□□□ -0.61
LIG1-202ENST00000427526 ZNF138P52744 262 aa11.21□□□□□ -0.61
LIG1-202ENST00000427526 KLF17Q5JT82 389 aaPredicted RBP11.21□□□□□ -0.61
LIG1-202ENST00000427526 BCL6BQ8N143 479 aaPredicted RBP11.21□□□□□ -0.61
LIG1-202ENST00000427526 ASCL2Q99929 193 aa11.21□□□□□ -0.61
LIG1-202ENST00000427526 OR5AL1P0C617 328 aa11.21□□□□□ -0.62
LIG1-202ENST00000427526 ARMS2P0C7Q2 107 aa11.21□□□□□ -0.62
LIG1-202ENST00000427526 ARF6P62330 175 aa11.21□□□□□ -0.62
LIG1-202ENST00000427526 UNQ5815/PRO19632Q6UWF5 114 aa11.21□□□□□ -0.62
LIG1-202ENST00000427526 DTX2Q86UW9 622 aa11.21□□□□□ -0.62
LIG1-202ENST00000427526 IGFBPL1Q8WX77 278 aa11.21□□□□□ -0.62
LIG1-202ENST00000427526 TIMD4Q96H15 378 aa11.21□□□□□ -0.62
LIG1-202ENST00000427526 FCGR2BP31994 310 aaPredicted RBP11.2□□□□□ -0.62
LIG1-202ENST00000427526 NEU4Q8WWR8 484 aaPredicted RBP11.2□□□□□ -0.62
LIG1-202ENST00000427526 FANCD2OSQ96PS1 177 aa11.2□□□□□ -0.62
LIG1-202ENST00000427526 UBTD1Q9HAC8 227 aa11.2□□□□□ -0.62
LIG1-202ENST00000427526 K7EQM0 130 aa11.2□□□□□ -0.62
LIG1-202ENST00000427526 HINT1P49773 126 aaPredicted RBP11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms