RNA–Protein interactions for RNA: ENST00000423575.5

LINC00539-202, long intergenic non-protein coding RNA 539, humanhuman

TSL 3 BASIC

Gene LINC00539, Length 699 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-202ENST00000423575 HIST1H1EP10412 219 aaKnown RBP9□□□□□ -0.97
LINC00539-202ENST00000423575 PSMB3P49720 205 aa9□□□□□ -0.97
LINC00539-202ENST00000423575 TAS2R45P59539 299 aa9□□□□□ -0.97
LINC00539-202ENST00000423575 KHDC3LQ587J8 217 aa9□□□□□ -0.97
LINC00539-202ENST00000423575 IGFL4Q6B9Z1 124 aa9□□□□□ -0.97
LINC00539-202ENST00000423575 DEFB125Q8N687 156 aa9□□□□□ -0.97
LINC00539-202ENST00000423575 FXYD5Q96DB9 178 aa9□□□□□ -0.97
LINC00539-202ENST00000423575 FAM110AQ9BQ89 295 aa9□□□□□ -0.97
LINC00539-202ENST00000423575 PAXXQ9BUH6 204 aa9□□□□□ -0.97
LINC00539-202ENST00000423575 ACTR3CQ9C0K3 210 aaPredicted RBP9□□□□□ -0.97
LINC00539-202ENST00000423575 OR51M1Q9H341 326 aa9□□□□□ -0.97
LINC00539-202ENST00000423575 HRH4Q9H3N8 390 aa9□□□□□ -0.97
LINC00539-202ENST00000423575 OR11H12B2RN74 326 aa8.99□□□□□ -0.97
LINC00539-202ENST00000423575 UMAD1C9J7I0 102 aa8.99□□□□□ -0.97
LINC00539-202ENST00000423575 ISLRO14498 428 aa8.99□□□□□ -0.97
LINC00539-202ENST00000423575 OR10J4P0C629 311 aa8.99□□□□□ -0.97
LINC00539-202ENST00000423575 FHITP49789 147 aa8.99□□□□□ -0.97
LINC00539-202ENST00000423575 DEFB131AP59861 70 aa8.99□□□□□ -0.97
LINC00539-202ENST00000423575 UBE2L3P68036 154 aaKnown RBP8.99□□□□□ -0.97
LINC00539-202ENST00000423575 ZNF124Q15973 351 aa8.99□□□□□ -0.97
LINC00539-202ENST00000423575 PSMG4Q5JS54 123 aa8.99□□□□□ -0.97
LINC00539-202ENST00000423575 SAMD13Q5VXD3 122 aa8.99□□□□□ -0.97
LINC00539-202ENST00000423575 LCN15Q6UWW0 184 aa8.99□□□□□ -0.97
LINC00539-202ENST00000423575 RNF141Q8WVD5 230 aa8.99□□□□□ -0.97
LINC00539-202ENST00000423575 SAT2Q96F10 170 aaPredicted RBP8.99□□□□□ -0.97
LINC00539-202ENST00000423575 C16orf92Q96LL3 132 aa8.99□□□□□ -0.97
LINC00539-202ENST00000423575 C20orf173Q96LM9 149 aa8.99□□□□□ -0.97
LINC00539-202ENST00000423575 TRBV19A0A075B6N1 114 aa8.98□□□□□ -0.97
LINC00539-202ENST00000423575 CTXND1A0A1B0GTU2 59 aa8.98□□□□□ -0.97
LINC00539-202ENST00000423575 NDUFB4O95168 129 aa8.98□□□□□ -0.97
LINC00539-202ENST00000423575 STAG3L2P0CL84 134 aa8.98□□□□□ -0.97
LINC00539-202ENST00000423575 STAG3L3P0CL85 134 aa8.98□□□□□ -0.97
LINC00539-202ENST00000423575 ARL14EPLP0DKL9 152 aa8.98□□□□□ -0.97
LINC00539-202ENST00000423575 IGHV4-30-4P0DP06 118 aa8.98□□□□□ -0.97
LINC00539-202ENST00000423575 HLA-DMBP28068 263 aa8.98□□□□□ -0.97
LINC00539-202ENST00000423575 ID1P41134 155 aa8.98□□□□□ -0.97
LINC00539-202ENST00000423575 SNRPD3P62318 126 aaKnown RBP8.98□□□□□ -0.97
LINC00539-202ENST00000423575 GUK1Q16774 197 aa8.98□□□□□ -0.97
LINC00539-202ENST00000423575 PQLC2Q6ZP29 291 aa8.98□□□□□ -0.97
LINC00539-202ENST00000423575 APRG1Q8IVJ8 170 aa8.98□□□□□ -0.97
LINC00539-202ENST00000423575 RNF182Q8N6D2 247 aa8.98□□□□□ -0.97
LINC00539-202ENST00000423575 FAM213BQ8TBF2 198 aa8.98□□□□□ -0.97
LINC00539-202ENST00000423575 BLNKQ8WV28 456 aa8.98□□□□□ -0.97
LINC00539-202ENST00000423575 CITED4Q96RK1 184 aa8.98□□□□□ -0.97
LINC00539-202ENST00000423575 ZNF331Q9NQX6 463 aaPredicted RBP8.98□□□□□ -0.97
LINC00539-202ENST00000423575 ZNF253O75346 499 aa8.97□□□□□ -0.97
LINC00539-202ENST00000423575 NBEAP1P0C6P0 100 aa8.97□□□□□ -0.97
LINC00539-202ENST00000423575 CMC4P56277 68 aaPredicted RBP8.97□□□□□ -0.97
LINC00539-202ENST00000423575 DEFB1P60022 68 aa8.97□□□□□ -0.97
LINC00539-202ENST00000423575 FAM74A1Q5RGS3 127 aa8.97□□□□□ -0.97
LINC00539-202ENST00000423575 EIF5AL1Q6IS14 154 aaKnown RBP8.97□□□□□ -0.97
LINC00539-202ENST00000423575 LRRC20Q8TCA0 184 aa8.97□□□□□ -0.97
LINC00539-202ENST00000423575 PHYHIPLQ96FC7 376 aa8.97□□□□□ -0.97
LINC00539-202ENST00000423575 LINC00052Q96N35 136 aa8.97□□□□□ -0.97
LINC00539-202ENST00000423575 SLC50A1Q9BRV3 221 aa8.97□□□□□ -0.97
LINC00539-202ENST00000423575 SRD5A3Q9H8P0 318 aa8.97□□□□□ -0.97
LINC00539-202ENST00000423575 PRKDCP78527 4128 aaKnown RBP8.96□□□□□ -0.97
LINC00539-202ENST00000423575 MAP1LC3B2A6NCE7 125 aa8.96□□□□□ -0.98
LINC00539-202ENST00000423575 KNCNA6PVL3 124 aa8.96□□□□□ -0.98
LINC00539-202ENST00000423575 GCHFRP30047 84 aa8.96□□□□□ -0.98
LINC00539-202ENST00000423575 SULT1A2P50226 295 aa8.96□□□□□ -0.98
LINC00539-202ENST00000423575 PDE6HQ13956 83 aa8.96□□□□□ -0.98
LINC00539-202ENST00000423575 ALKAL2Q6UX46 152 aa8.96□□□□□ -0.98
LINC00539-202ENST00000423575 MRAPQ8TCY5 172 aa8.96□□□□□ -0.98
LINC00539-202ENST00000423575 MAP1LC3BQ9GZQ8 125 aa8.96□□□□□ -0.98
LINC00539-202ENST00000423575 A8MZ25 164 aa8.95□□□□□ -0.98
LINC00539-202ENST00000423575 F6UB75 175 aa8.95□□□□□ -0.98
LINC00539-202ENST00000423575 CXorf1O96002 111 aa8.95□□□□□ -0.98
LINC00539-202ENST00000423575 PRB4P10163 310 aaPredicted RBP8.95□□□□□ -0.98
LINC00539-202ENST00000423575 FGF8P55075 233 aaPredicted RBP8.95□□□□□ -0.98
LINC00539-202ENST00000423575 PSG3Q16557 428 aa8.95□□□□□ -0.98
LINC00539-202ENST00000423575 DPPA3Q6W0C5 159 aa8.95□□□□□ -0.98
LINC00539-202ENST00000423575 TUBA4BQ9H853 241 aa8.95□□□□□ -0.98
LINC00539-202ENST00000423575 RBMY1BA6NDE4 496 aaKnown RBP8.94□□□□□ -0.98
LINC00539-202ENST00000423575 RBMY1EA6NEQ0 496 aaKnown RBP8.94□□□□□ -0.98
LINC00539-202ENST00000423575 M0R3E3 92 aa8.94□□□□□ -0.98
LINC00539-202ENST00000423575 RBMY1DP0C7P1 496 aaKnown RBP8.94□□□□□ -0.98
LINC00539-202ENST00000423575 FRMD6-AS1P0C7T7 363 aa8.94□□□□□ -0.98
LINC00539-202ENST00000423575 RAB5CP51148 216 aa8.94□□□□□ -0.98
LINC00539-202ENST00000423575 DEFB121Q5J5C9 76 aa8.94□□□□□ -0.98
LINC00539-202ENST00000423575 ACTL10Q5JWF8 245 aa8.94□□□□□ -0.98
LINC00539-202ENST00000423575 GDF5OSQ5U4N7 250 aa8.94□□□□□ -0.98
LINC00539-202ENST00000423575 IQCF2Q8IXL9 164 aa8.94□□□□□ -0.98
LINC00539-202ENST00000423575 EXOC3-AS1Q8N2X6 119 aa8.94□□□□□ -0.98
LINC00539-202ENST00000423575 ZNF738Q8NE65 137 aa8.94□□□□□ -0.98
LINC00539-202ENST00000423575 SUN5Q8TC36 379 aa8.94□□□□□ -0.98
LINC00539-202ENST00000423575 MBD3L1Q8WWY6 194 aa8.94□□□□□ -0.98
LINC00539-202ENST00000423575 TMPRSS5Q9H3S3 457 aa8.94□□□□□ -0.98
LINC00539-202ENST00000423575 DNAH9Q9NYC9 4486 aa8.93□□□□□ -0.98
LINC00539-202ENST00000423575 A0A1B0GV50 99 aa8.93□□□□□ -0.98
LINC00539-202ENST00000423575 ZNF705FA8MVS1 300 aaPredicted RBP8.93□□□□□ -0.98
LINC00539-202ENST00000423575 PRAC2D3DTV9 90 aa8.93□□□□□ -0.98
LINC00539-202ENST00000423575 RANP62826 216 aaKnown RBP8.93□□□□□ -0.98
LINC00539-202ENST00000423575 PSG9Q00887 426 aa8.93□□□□□ -0.98
LINC00539-202ENST00000423575 ICAM4Q14773 271 aa8.93□□□□□ -0.98
LINC00539-202ENST00000423575 LINC00322Q6ZN03 302 aaPredicted RBP8.93□□□□□ -0.98
LINC00539-202ENST00000423575 FOXI2Q6ZQN5 318 aa8.93□□□□□ -0.98
LINC00539-202ENST00000423575 SFT2D1Q8WV19 159 aa8.93□□□□□ -0.98
LINC00539-202ENST00000423575 RPUSD4Q96CM3 377 aaKnown RBP8.93□□□□□ -0.98
LINC00539-202ENST00000423575 Q9H3A6 140 aa8.93□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms