RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 PYYP10082 97 aa5.63□□□□□ -1.51
SCN1A-204ENST00000423058 KLRD1Q13241 179 aa5.63□□□□□ -1.51
SCN1A-204ENST00000423058 RTBDNQ9BSG5 229 aaPredicted RBP5.63□□□□□ -1.51
SCN1A-204ENST00000423058 NDUFS6O75380 124 aaKnown RBP5.62□□□□□ -1.51
SCN1A-204ENST00000423058 NCOA6Q14686 2063 aaPredicted RBP5.62□□□□□ -1.51
SCN1A-204ENST00000423058 CTSBP07858 339 aa5.62□□□□□ -1.51
SCN1A-204ENST00000423058 CD59P13987 128 aa5.62□□□□□ -1.51
SCN1A-204ENST00000423058 NDPQ00604 133 aa5.62□□□□□ -1.51
SCN1A-204ENST00000423058 KLF5Q13887 457 aaPredicted RBP5.62□□□□□ -1.51
SCN1A-204ENST00000423058 KLF17Q5JT82 389 aaPredicted RBP5.62□□□□□ -1.51
SCN1A-204ENST00000423058 BOD1L2Q8IYS8 172 aa5.62□□□□□ -1.51
SCN1A-204ENST00000423058 RPRMLQ8N4K4 120 aa5.62□□□□□ -1.51
SCN1A-204ENST00000423058 TMEM243Q9BU79 118 aa5.62□□□□□ -1.51
SCN1A-204ENST00000423058 SMIM2Q9BVW6 85 aa5.62□□□□□ -1.51
SCN1A-204ENST00000423058 RHPN1-AS1Q9BWJ2 59 aa5.62□□□□□ -1.51
SCN1A-204ENST00000423058 SYNJ2BPP57105 145 aa5.62□□□□□ -1.51
SCN1A-204ENST00000423058 RPL23P62829 140 aaKnown RBP5.62□□□□□ -1.51
SCN1A-204ENST00000423058 ZCCHC24Q8N2G6 241 aaKnown RBP5.62□□□□□ -1.51
SCN1A-204ENST00000423058 D6R8Y8 96 aa5.62□□□□□ -1.51
SCN1A-204ENST00000423058 IGFBP3P17936 291 aaPredicted RBP5.62□□□□□ -1.51
SCN1A-204ENST00000423058 C1QL4Q86Z23 238 aa5.62□□□□□ -1.51
SCN1A-204ENST00000423058 PLPPR1Q8TBJ4 325 aa5.62□□□□□ -1.51
SCN1A-204ENST00000423058 UBL5Q9BZL1 73 aa5.62□□□□□ -1.51
SCN1A-204ENST00000423058 BPESC1Q9GZL8 116 aa5.62□□□□□ -1.51
SCN1A-204ENST00000423058 TRAV8-1A0A0A6YYK1 113 aa5.62□□□□□ -1.51
SCN1A-204ENST00000423058 A6NNC1 897 aa5.62□□□□□ -1.51
SCN1A-204ENST00000423058 NDUFB8O95169 186 aa5.62□□□□□ -1.51
SCN1A-204ENST00000423058 FOXL1Q12952 345 aa5.62□□□□□ -1.51
SCN1A-204ENST00000423058 ANXA2RQ3ZCQ2 193 aa5.62□□□□□ -1.51
SCN1A-204ENST00000423058 NABP1Q96AH0 204 aa5.62□□□□□ -1.51
SCN1A-204ENST00000423058 PLXNA4Q9HCM2 1894 aa5.62□□□□□ -1.51
SCN1A-204ENST00000423058 RIF1Q5UIP0 2472 aaKnown RBP5.62□□□□□ -1.51
SCN1A-204ENST00000423058 TANC1Q9C0D5 1861 aa5.62□□□□□ -1.51
SCN1A-204ENST00000423058 hADV29S1A0JD25 119 aa5.62□□□□□ -1.51
SCN1A-204ENST00000423058 I3L3M4 83 aa5.62□□□□□ -1.51
SCN1A-204ENST00000423058 SERF1AO75920 110 aa5.62□□□□□ -1.51
SCN1A-204ENST00000423058 TCRAP04437 139 aa5.62□□□□□ -1.51
SCN1A-204ENST00000423058 PMVKQ15126 192 aa5.62□□□□□ -1.51
SCN1A-204ENST00000423058 MST1LQ2TV78 715 aa5.62□□□□□ -1.51
SCN1A-204ENST00000423058 TSSC4Q9Y5U2 329 aaPredicted RBP5.62□□□□□ -1.51
SCN1A-204ENST00000423058 PLXNB1O43157 2135 aa5.61□□□□□ -1.51
SCN1A-204ENST00000423058 GAGE2AQ6NT46 116 aa5.61□□□□□ -1.51
SCN1A-204ENST00000423058 EXOC3-AS1Q8N2X6 119 aa5.61□□□□□ -1.51
SCN1A-204ENST00000423058 TMEM141Q96I45 108 aa5.61□□□□□ -1.51
SCN1A-204ENST00000423058 WFDC6Q9BQY6 131 aa5.61□□□□□ -1.51
SCN1A-204ENST00000423058 MEGF9Q9H1U4 602 aa5.61□□□□□ -1.51
SCN1A-204ENST00000423058 MPZP25189 248 aa5.61□□□□□ -1.51
SCN1A-204ENST00000423058 TMEM170AQ8WVE7 144 aa5.61□□□□□ -1.51
SCN1A-204ENST00000423058 NTN3O00634 580 aaPredicted RBP5.61□□□□□ -1.51
SCN1A-204ENST00000423058 UBE2E1P51965 193 aa5.61□□□□□ -1.51
SCN1A-204ENST00000423058 FOXF2Q12947 444 aa5.61□□□□□ -1.51
SCN1A-204ENST00000423058 SCRT1Q9BWW7 348 aa5.61□□□□□ -1.51
SCN1A-204ENST00000423058 TRAV25A0A0B4J276 109 aa5.61□□□□□ -1.51
SCN1A-204ENST00000423058 F8VVB4 439 aa5.61□□□□□ -1.51
SCN1A-204ENST00000423058 F8VWA3 439 aa5.61□□□□□ -1.51
SCN1A-204ENST00000423058 PIN1P1O15428 100 aa5.61□□□□□ -1.51
SCN1A-204ENST00000423058 SH2D1AO60880 128 aa5.61□□□□□ -1.51
SCN1A-204ENST00000423058 H0YJW9 148 aa5.61□□□□□ -1.51
SCN1A-204ENST00000423058 DEFB131AP59861 70 aa5.61□□□□□ -1.51
SCN1A-204ENST00000423058 SIGLEC9Q9Y336 463 aa5.61□□□□□ -1.51
SCN1A-204ENST00000423058 COX11Q9Y6N1 276 aa5.61□□□□□ -1.51
SCN1A-204ENST00000423058 EML5Q05BV3 1969 aa5.61□□□□□ -1.51
SCN1A-204ENST00000423058 A0A1B0GW64 132 aa5.61□□□□□ -1.51
SCN1A-204ENST00000423058 FNDC10F2Z333 226 aa5.61□□□□□ -1.51
SCN1A-204ENST00000423058 SPXQ9BT56 116 aa5.61□□□□□ -1.51
SCN1A-204ENST00000423058 C4orf51C9J302 202 aa5.61□□□□□ -1.51
SCN1A-204ENST00000423058 TCTEX1D4Q5JR98 221 aa5.61□□□□□ -1.51
SCN1A-204ENST00000423058 CD55P08174 381 aa5.6□□□□□ -1.51
SCN1A-204ENST00000423058 SH2D6Q7Z4S9 175 aa5.6□□□□□ -1.51
SCN1A-204ENST00000423058 TRAV8-3A0A0A6YYJ7 113 aa5.6□□□□□ -1.51
SCN1A-204ENST00000423058 ZNF362Q5T0B9 420 aaPredicted RBP5.6□□□□□ -1.51
SCN1A-204ENST00000423058 ZNF329Q86UD4 541 aa5.6□□□□□ -1.51
SCN1A-204ENST00000423058 EGR2P11161 476 aaPredicted RBP5.6□□□□□ -1.51
SCN1A-204ENST00000423058 SELLP14151 372 aa5.6□□□□□ -1.51
SCN1A-204ENST00000423058 Q0VFX4 171 aa5.6□□□□□ -1.51
SCN1A-204ENST00000423058 C14orf178Q8N769 122 aaPredicted RBP5.6□□□□□ -1.51
SCN1A-204ENST00000423058 IL17DQ8TAD2 202 aa5.6□□□□□ -1.51
SCN1A-204ENST00000423058 ZNF625Q96I27 306 aaPredicted RBP5.6□□□□□ -1.51
SCN1A-204ENST00000423058 OCIAD2Q56VL3 154 aa5.6□□□□□ -1.51
SCN1A-204ENST00000423058 LYZL1Q6UWQ5 148 aa5.6□□□□□ -1.51
SCN1A-204ENST00000423058 TRAV13-2A0A0B4J235 113 aa5.6□□□□□ -1.51
SCN1A-204ENST00000423058 MBD3L4A6NDZ8 208 aaPredicted RBP5.6□□□□□ -1.51
SCN1A-204ENST00000423058 MBD3L3A6NE82 208 aaPredicted RBP5.6□□□□□ -1.51
SCN1A-204ENST00000423058 MBD3L5A6NJ08 208 aaPredicted RBP5.6□□□□□ -1.51
SCN1A-204ENST00000423058 H3BQ85 93 aa5.6□□□□□ -1.51
SCN1A-204ENST00000423058 K7ENP7 123 aa5.6□□□□□ -1.51
SCN1A-204ENST00000423058 MBD3L2Q8NHZ7 208 aaPredicted RBP5.6□□□□□ -1.51
SCN1A-204ENST00000423058 KLK5Q9Y337 293 aaPredicted RBP5.6□□□□□ -1.51
SCN1A-204ENST00000423058 C9orf66Q5T8R8 295 aa5.59□□□□□ -1.51
SCN1A-204ENST00000423058 IGHV1-69DA0A0B4J2H0 117 aa5.59□□□□□ -1.51
SCN1A-204ENST00000423058 EFNA2O43921 213 aa5.59□□□□□ -1.51
SCN1A-204ENST00000423058 IGHV1-69P01742 117 aa5.59□□□□□ -1.51
SCN1A-204ENST00000423058 LMO1P25800 156 aa5.59□□□□□ -1.51
SCN1A-204ENST00000423058 CHKB-CPT1BH3BT56 60 aa5.59□□□□□ -1.51
SCN1A-204ENST00000423058 ANGP03950 147 aaKnown RBP5.59□□□□□ -1.51
SCN1A-204ENST00000423058 IFITM3Q01628 133 aa5.59□□□□□ -1.51
SCN1A-204ENST00000423058 A0A1B0GTI1 187 aa5.59□□□□□ -1.51
SCN1A-204ENST00000423058 PRTN3P24158 256 aa5.59□□□□□ -1.51
SCN1A-204ENST00000423058 TMEM75Q8N9X5 138 aa5.59□□□□□ -1.51
SCN1A-204ENST00000423058 TET2Q6N021 2002 aaPredicted RBP5.59□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 84.7 ms