RNA–Protein interactions for RNA: ENST00000409672.5

SCN9A-203, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS P2 TSL 5 BASIC

Gene SCN9A, Length 9,768 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-203ENST00000409672 ERG28Q9UKR5 140 aa6.86□□□□□ -1.31
SCN9A-203ENST00000409672 ZFP36P26651 326 aaKnown RBP6.86□□□□□ -1.31
SCN9A-203ENST00000409672 DUTP33316 252 aaKnown RBP6.86□□□□□ -1.31
SCN9A-203ENST00000409672 PMVKQ15126 192 aa6.86□□□□□ -1.31
SCN9A-203ENST00000409672 REG4Q9BYZ8 158 aa6.86□□□□□ -1.31
SCN9A-203ENST00000409672 TRBV9A0A0B4J1U6 114 aa6.86□□□□□ -1.31
SCN9A-203ENST00000409672 IGHV4-28A0A0C4DH34 117 aa6.86□□□□□ -1.31
SCN9A-203ENST00000409672 FAM120AOSQ5T036 256 aa6.86□□□□□ -1.31
SCN9A-203ENST00000409672 PLXNA3P51805 1871 aa6.86□□□□□ -1.31
SCN9A-203ENST00000409672 ZNF138P52744 262 aa6.85□□□□□ -1.31
SCN9A-203ENST00000409672 RBMY1FQ15415 496 aaKnown RBP6.85□□□□□ -1.31
SCN9A-203ENST00000409672 C5orf64Q2M2E5 130 aa6.85□□□□□ -1.31
SCN9A-203ENST00000409672 RASL11AQ6T310 242 aa6.85□□□□□ -1.31
SCN9A-203ENST00000409672 NOP10Q9NPE3 64 aaKnown RBP6.85□□□□□ -1.31
SCN9A-203ENST00000409672 OCIAD2Q56VL3 154 aa6.85□□□□□ -1.31
SCN9A-203ENST00000409672 GGNQ86UU5 652 aa6.85□□□□□ -1.31
SCN9A-203ENST00000409672 PSMG3Q9BT73 122 aaPredicted RBP6.85□□□□□ -1.31
SCN9A-203ENST00000409672 PLSCR4Q9NRQ2 329 aa6.85□□□□□ -1.31
SCN9A-203ENST00000409672 ANAPC1Q9H1A4 1944 aa6.85□□□□□ -1.31
SCN9A-203ENST00000409672 IL18BPO95998 194 aa6.85□□□□□ -1.31
SCN9A-203ENST00000409672 GAGE2AQ6NT46 116 aa6.85□□□□□ -1.31
SCN9A-203ENST00000409672 PLXNA4Q9HCM2 1894 aa6.85□□□□□ -1.31
SCN9A-203ENST00000409672 CFHR2P36980 270 aa6.85□□□□□ -1.31
SCN9A-203ENST00000409672 KLF5Q13887 457 aaPredicted RBP6.85□□□□□ -1.31
SCN9A-203ENST00000409672 ZNRF2Q8NHG8 242 aa6.85□□□□□ -1.31
SCN9A-203ENST00000409672 C8orf49Q96NF6 230 aa6.85□□□□□ -1.31
SCN9A-203ENST00000409672 NLRC5Q86WI3 1866 aa6.85□□□□□ -1.31
SCN9A-203ENST00000409672 H3BMM0 161 aa6.85□□□□□ -1.31
SCN9A-203ENST00000409672 SERF1AO75920 110 aa6.85□□□□□ -1.31
SCN9A-203ENST00000409672 XCL1P47992 114 aa6.85□□□□□ -1.31
SCN9A-203ENST00000409672 DUX4L9Q6RFH8 374 aaPredicted RBP6.85□□□□□ -1.31
SCN9A-203ENST00000409672 UBE2WQ96B02 151 aa6.85□□□□□ -1.31
SCN9A-203ENST00000409672 VSIRQ9H7M9 311 aa6.85□□□□□ -1.31
SCN9A-203ENST00000409672 NCOA6Q14686 2063 aaPredicted RBP6.85□□□□□ -1.31
SCN9A-203ENST00000409672 IGHV3-30P01768 117 aa6.85□□□□□ -1.31
SCN9A-203ENST00000409672 IGHV3-33P01772 117 aa6.85□□□□□ -1.31
SCN9A-203ENST00000409672 IGHV3-30-3P0DP02 117 aa6.85□□□□□ -1.31
SCN9A-203ENST00000409672 IGHV3-30-5P0DP03 117 aa6.85□□□□□ -1.31
SCN9A-203ENST00000409672 APRG1Q8IVJ8 170 aa6.85□□□□□ -1.31
SCN9A-203ENST00000409672 WNK1Q9H4A3 2382 aa6.84□□□□□ -1.31
SCN9A-203ENST00000409672 PRSS29PA6NIE9 313 aa6.84□□□□□ -1.31
SCN9A-203ENST00000409672 NDUFS7O75251 213 aa6.84□□□□□ -1.31
SCN9A-203ENST00000409672 KLF12Q9Y4X4 402 aa6.84□□□□□ -1.31
SCN9A-203ENST00000409672 RFNGQ9Y644 331 aa6.84□□□□□ -1.31
SCN9A-203ENST00000409672 STAG3L3P0CL85 134 aa6.84□□□□□ -1.31
SCN9A-203ENST00000409672 GGTLC1Q9BX51 225 aa6.84□□□□□ -1.31
SCN9A-203ENST00000409672 NRN1Q9NPD7 142 aa6.84□□□□□ -1.31
SCN9A-203ENST00000409672 UCP3P55916 312 aa6.84□□□□□ -1.31
SCN9A-203ENST00000409672 RPL23P62829 140 aaKnown RBP6.84□□□□□ -1.31
SCN9A-203ENST00000409672 IGLV10-54A0A075B6I4 117 aa6.84□□□□□ -1.31
SCN9A-203ENST00000409672 TRBV25-1A0A075B6N4 114 aa6.84□□□□□ -1.31
SCN9A-203ENST00000409672 F8W735 103 aaPredicted RBP6.84□□□□□ -1.31
SCN9A-203ENST00000409672 NTN3O00634 580 aaPredicted RBP6.84□□□□□ -1.31
SCN9A-203ENST00000409672 PSG3Q16557 428 aa6.84□□□□□ -1.31
SCN9A-203ENST00000409672 GAFA1Q96PS6 74 aa6.84□□□□□ -1.31
SCN9A-203ENST00000409672 GAGE2EQ4V326 116 aa6.84□□□□□ -1.31
SCN9A-203ENST00000409672 NEGR1Q7Z3B1 354 aa6.84□□□□□ -1.31
SCN9A-203ENST00000409672 RASL10AQ92737 203 aa6.84□□□□□ -1.31
SCN9A-203ENST00000409672 GAGE2DQ9UEU5 116 aa6.84□□□□□ -1.31
SCN9A-203ENST00000409672 NEUROG3Q9Y4Z2 214 aa6.84□□□□□ -1.31
SCN9A-203ENST00000409672 TRAV26-2A0A0B4J265 109 aa6.84□□□□□ -1.32
SCN9A-203ENST00000409672 IGKV1D-12P01611 117 aa6.84□□□□□ -1.32
SCN9A-203ENST00000409672 ORMDL2Q53FV1 153 aa6.84□□□□□ -1.32
SCN9A-203ENST00000409672 MINOS1Q5TGZ0 78 aa6.84□□□□□ -1.32
SCN9A-203ENST00000409672 SLC25A48Q6ZT89 311 aaKnown RBP6.84□□□□□ -1.32
SCN9A-203ENST00000409672 C8orf86Q6ZUL3 223 aa6.84□□□□□ -1.32
SCN9A-203ENST00000409672 TM2D1Q9BX74 207 aa6.84□□□□□ -1.32
SCN9A-203ENST00000409672 MINOS1-NBL1R4GNA1 71 aa6.84□□□□□ -1.32
SCN9A-203ENST00000409672 RPP25LQ8N5L8 163 aaKnown RBP6.83□□□□□ -1.32
SCN9A-203ENST00000409672 OCC1Q8TAD7 63 aa6.83□□□□□ -1.32
SCN9A-203ENST00000409672 A0A0A6YYD4 124 aa6.83□□□□□ -1.32
SCN9A-203ENST00000409672 CD5LO43866 347 aa6.83□□□□□ -1.32
SCN9A-203ENST00000409672 ATXN8Q156A1 80 aa6.83□□□□□ -1.32
SCN9A-203ENST00000409672 LGALS1P09382 135 aaKnown RBP6.83□□□□□ -1.32
SCN9A-203ENST00000409672 EIF4EBP2Q13542 120 aaPredicted RBP6.83□□□□□ -1.32
SCN9A-203ENST00000409672 RS1O15537 224 aa6.83□□□□□ -1.32
SCN9A-203ENST00000409672 SMIM6P0DI80 62 aa6.83□□□□□ -1.32
SCN9A-203ENST00000409672 KIAA1671Q9BY89 1806 aa6.83□□□□□ -1.32
SCN9A-203ENST00000409672 F2Z2F3 143 aa6.83□□□□□ -1.32
SCN9A-203ENST00000409672 H0YJW9 148 aa6.83□□□□□ -1.32
SCN9A-203ENST00000409672 CCL24O00175 119 aa6.83□□□□□ -1.32
SCN9A-203ENST00000409672 USMG5Q96IX5 58 aa6.83□□□□□ -1.32
SCN9A-203ENST00000409672 FAM223BA6NKX1 122 aa6.83□□□□□ -1.32
SCN9A-203ENST00000409672 GRNP28799 593 aaKnown RBP6.83□□□□□ -1.32
SCN9A-203ENST00000409672 FAM223AQ8IWN6 122 aa6.83□□□□□ -1.32
SCN9A-203ENST00000409672 STPG2Q8N412 459 aa6.83□□□□□ -1.32
SCN9A-203ENST00000409672 DAZ1Q9NQZ3 744 aaKnown RBP6.83□□□□□ -1.32
SCN9A-203ENST00000409672 MRPS18CQ9Y3D5 142 aaKnown RBP6.83□□□□□ -1.32
SCN9A-203ENST00000409672 CLDN16Q9Y5I7 305 aa6.83□□□□□ -1.32
SCN9A-203ENST00000409672 WDR90Q96KV7 1748 aa6.83□□□□□ -1.32
SCN9A-203ENST00000409672 IGHV1-69DA0A0B4J2H0 117 aa6.83□□□□□ -1.32
SCN9A-203ENST00000409672 IGHV1-69P01742 117 aa6.83□□□□□ -1.32
SCN9A-203ENST00000409672 WFDC11Q8NEX6 87 aa6.83□□□□□ -1.32
SCN9A-203ENST00000409672 SCRT2Q9NQ03 307 aa6.83□□□□□ -1.32
SCN9A-203ENST00000409672 ATRXP46100 2492 aa6.83□□□□□ -1.32
SCN9A-203ENST00000409672 SIGLEC9Q9Y336 463 aa6.82□□□□□ -1.32
SCN9A-203ENST00000409672 GGACTQ9BVM4 153 aa6.82□□□□□ -1.32
SCN9A-203ENST00000409672 ZNF581Q9P0T4 197 aa6.82□□□□□ -1.32
SCN9A-203ENST00000409672 RIF1Q5UIP0 2472 aaKnown RBP6.82□□□□□ -1.32
SCN9A-203ENST00000409672 ZNF98A6NK75 572 aa6.82□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms