RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 RIGQ13278 110 aa10.01□□□□□ -0.81
SHMT1-205ENST00000395684 FOXE3Q13461 319 aa10.01□□□□□ -0.81
SHMT1-205ENST00000395684 LINC01545Q5VT33 79 aa10.01□□□□□ -0.81
SHMT1-205ENST00000395684 GFRALQ6UXV0 394 aa10.01□□□□□ -0.81
SHMT1-205ENST00000395684 Q8NA96 180 aa10.01□□□□□ -0.81
SHMT1-205ENST00000395684 IGFBPL1Q8WX77 278 aa10.01□□□□□ -0.81
SHMT1-205ENST00000395684 TPPP3Q9BW30 176 aa10.01□□□□□ -0.81
SHMT1-205ENST00000395684 AP5S1Q9NUS5 200 aa10.01□□□□□ -0.81
SHMT1-205ENST00000395684 S4R3C0 116 aa10.01□□□□□ -0.81
SHMT1-205ENST00000395684 PPIAL4CA0A0B4J2A2 164 aa10.01□□□□□ -0.81
SHMT1-205ENST00000395684 MUC21A0A0G2JKD1 596 aa10.01□□□□□ -0.81
SHMT1-205ENST00000395684 MUC21A0A140T8X8 626 aa10.01□□□□□ -0.81
SHMT1-205ENST00000395684 HLA-DRB1P01911 266 aa10.01□□□□□ -0.81
SHMT1-205ENST00000395684 IL4P05112 153 aa10.01□□□□□ -0.81
SHMT1-205ENST00000395684 FAM106CPP0CH98 169 aa10.01□□□□□ -0.81
SHMT1-205ENST00000395684 PPIAL4GP0DN37 164 aa10.01□□□□□ -0.81
SHMT1-205ENST00000395684 PCP4P48539 62 aa10.01□□□□□ -0.81
SHMT1-205ENST00000395684 FAM106AQ4KMX7 169 aa10.01□□□□□ -0.81
SHMT1-205ENST00000395684 KLF17Q5JT82 389 aaPredicted RBP10.01□□□□□ -0.81
SHMT1-205ENST00000395684 MUC21Q5SSG8 566 aa10.01□□□□□ -0.81
SHMT1-205ENST00000395684 GATD1Q8NB37 220 aa10.01□□□□□ -0.81
SHMT1-205ENST00000395684 ZNF414Q96IQ9 312 aa10.01□□□□□ -0.81
SHMT1-205ENST00000395684 ZNF747Q9BV97 191 aa10.01□□□□□ -0.81
SHMT1-205ENST00000395684 K7EP13 123 aa10□□□□□ -0.81
SHMT1-205ENST00000395684 NCR2O95944 276 aa10□□□□□ -0.81
SHMT1-205ENST00000395684 APOBEC3AP31941 199 aaPredicted RBP10□□□□□ -0.81
SHMT1-205ENST00000395684 FCGR2BP31994 310 aaPredicted RBP10□□□□□ -0.81
SHMT1-205ENST00000395684 VAMP3Q15836 100 aa10□□□□□ -0.81
SHMT1-205ENST00000395684 RNF125Q96EQ8 232 aa10□□□□□ -0.81
SHMT1-205ENST00000395684 C8orf49Q96NF6 230 aa10□□□□□ -0.81
SHMT1-205ENST00000395684 POLEQ07864 2286 aa10□□□□□ -0.81
SHMT1-205ENST00000395684 A0A087X0K7 114 aa10□□□□□ -0.81
SHMT1-205ENST00000395684 TIMM23O14925 209 aa10□□□□□ -0.81
SHMT1-205ENST00000395684 DEFB125Q8N687 156 aa10□□□□□ -0.81
SHMT1-205ENST00000395684 LYPD1Q8N2G4 141 aa10□□□□□ -0.81
SHMT1-205ENST00000395684 OR4C5Q8NGB2 326 aa10□□□□□ -0.81
SHMT1-205ENST00000395684 PRSS3P2Q8NHM4 247 aa10□□□□□ -0.81
SHMT1-205ENST00000395684 MS4A6AQ9H2W1 248 aa10□□□□□ -0.81
SHMT1-205ENST00000395684 PIEZO1Q92508 2521 aa9.99□□□□□ -0.81
SHMT1-205ENST00000395684 B9A039 149 aa9.99□□□□□ -0.81
SHMT1-205ENST00000395684 K7EQM0 130 aa9.99□□□□□ -0.81
SHMT1-205ENST00000395684 IFI27P40305 119 aaPredicted RBP9.99□□□□□ -0.81
SHMT1-205ENST00000395684 LOXL1Q08397 574 aaPredicted RBP9.99□□□□□ -0.81
SHMT1-205ENST00000395684 RNF5Q99942 180 aa9.99□□□□□ -0.81
SHMT1-205ENST00000395684 RNF24Q9Y225 148 aa9.99□□□□□ -0.81
SHMT1-205ENST00000395684 CHD8Q9HCK8 2581 aa9.99□□□□□ -0.81
SHMT1-205ENST00000395684 TRAV30A0A087WSZ9 112 aa9.99□□□□□ -0.81
SHMT1-205ENST00000395684 A0A096LNJ9 63 aa9.99□□□□□ -0.81
SHMT1-205ENST00000395684 OR2T8A6NH00 312 aa9.99□□□□□ -0.81
SHMT1-205ENST00000395684 PRR30Q53SZ7 412 aaPredicted RBP9.99□□□□□ -0.81
SHMT1-205ENST00000395684 C12orf54Q6X4T0 127 aa9.99□□□□□ -0.81
SHMT1-205ENST00000395684 SRSF8Q9BRL6 282 aaKnown RBP9.99□□□□□ -0.81
SHMT1-205ENST00000395684 DCHS2Q6V1P9 2916 aa9.99□□□□□ -0.81
SHMT1-205ENST00000395684 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP9.98□□□□□ -0.81
SHMT1-205ENST00000395684 WI2-2373I1.2A0A1W2PRP0 233 aa9.98□□□□□ -0.81
SHMT1-205ENST00000395684 RHOGP84095 191 aa9.98□□□□□ -0.81
SHMT1-205ENST00000395684 FA2HQ7L5A8 372 aa9.98□□□□□ -0.81
SHMT1-205ENST00000395684 LRBAP50851 2863 aa9.98□□□□□ -0.81
SHMT1-205ENST00000395684 TMSB15BA0A087X1C1 80 aa9.98□□□□□ -0.81
SHMT1-205ENST00000395684 A0A1B0GW15 77 aa9.98□□□□□ -0.81
SHMT1-205ENST00000395684 SNAI2O43623 268 aa9.98□□□□□ -0.81
SHMT1-205ENST00000395684 ARF6P62330 175 aa9.98□□□□□ -0.81
SHMT1-205ENST00000395684 ZNF493Q6ZR52 646 aa9.98□□□□□ -0.81
SHMT1-205ENST00000395684 OR10AG1Q8NH19 301 aa9.98□□□□□ -0.81
SHMT1-205ENST00000395684 RELNP78509 3460 aa9.97□□□□□ -0.81
SHMT1-205ENST00000395684 LOC389332A0A1B0GUA5 103 aa9.97□□□□□ -0.81
SHMT1-205ENST00000395684 TMEM213A2RRL7 107 aa9.97□□□□□ -0.81
SHMT1-205ENST00000395684 LYZL1Q6UWQ5 148 aa9.97□□□□□ -0.81
SHMT1-205ENST00000395684 C2orf91Q6ZV80 131 aa9.97□□□□□ -0.81
SHMT1-205ENST00000395684 PIP4P2Q8N4L2 257 aa9.97□□□□□ -0.81
SHMT1-205ENST00000395684 ONECUT1Q9UBC0 465 aa9.97□□□□□ -0.81
SHMT1-205ENST00000395684 HILPDAQ9Y5L2 63 aa9.97□□□□□ -0.81
SHMT1-205ENST00000395684 SERTM2A0A1B0GWG4 89 aa9.97□□□□□ -0.81
SHMT1-205ENST00000395684 A0A1W2PRD5 423 aa9.97□□□□□ -0.81
SHMT1-205ENST00000395684 A0A1W2PRF3 423 aa9.97□□□□□ -0.81
SHMT1-205ENST00000395684 A0A1W2PRM7 423 aa9.97□□□□□ -0.81
SHMT1-205ENST00000395684 CBY3A6NI87 242 aa9.97□□□□□ -0.81
SHMT1-205ENST00000395684 D6R8Y8 96 aa9.97□□□□□ -0.81
SHMT1-205ENST00000395684 COX8AP10176 69 aa9.97□□□□□ -0.81
SHMT1-205ENST00000395684 CSN1S1P47710 185 aa9.97□□□□□ -0.81
SHMT1-205ENST00000395684 HIST1H1AQ02539 215 aaPredicted RBP9.97□□□□□ -0.81
SHMT1-205ENST00000395684 Q6AWC8 147 aa9.97□□□□□ -0.81
SHMT1-205ENST00000395684 SIGLEC8Q9NYZ4 499 aa9.97□□□□□ -0.81
SHMT1-205ENST00000395684 NBR2O15453 112 aa9.96□□□□□ -0.81
SHMT1-205ENST00000395684 CD3EP07766 207 aa9.96□□□□□ -0.81
SHMT1-205ENST00000395684 GPR183P32249 361 aa9.96□□□□□ -0.81
SHMT1-205ENST00000395684 AMN1Q8IY45 258 aa9.96□□□□□ -0.81
SHMT1-205ENST00000395684 CT45A10P0DMU9 189 aa9.96□□□□□ -0.82
SHMT1-205ENST00000395684 TMEM190Q8WZ59 177 aa9.96□□□□□ -0.82
SHMT1-205ENST00000395684 CFHR4Q92496 578 aa9.96□□□□□ -0.82
SHMT1-205ENST00000395684 FANCD2OSQ96PS1 177 aa9.96□□□□□ -0.82
SHMT1-205ENST00000395684 NCOR2Q9Y618 2525 aa9.95□□□□□ -0.82
SHMT1-205ENST00000395684 F8W735 103 aaPredicted RBP9.95□□□□□ -0.82
SHMT1-205ENST00000395684 GNG7O60262 68 aa9.95□□□□□ -0.82
SHMT1-205ENST00000395684 FXYD7P58549 80 aa9.95□□□□□ -0.82
SHMT1-205ENST00000395684 AMMECR1LQ6DCA0 310 aa9.95□□□□□ -0.82
SHMT1-205ENST00000395684 LINC01560Q8TB33 94 aa9.95□□□□□ -0.82
SHMT1-205ENST00000395684 U3KQK5 164 aa9.95□□□□□ -0.82
SHMT1-205ENST00000395684 SVEP1Q4LDE5 3571 aa9.95□□□□□ -0.82
SHMT1-205ENST00000395684 TMEM189A5PLL7 270 aa9.95□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms