RNA–Protein interactions for RNA: ENST00000382723.4

MSX1-201, Transcript of msh homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX1, Length 1,939 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-201ENST00000382723 GRAMD2BQ96HH9 432 aa20.43■□□□□ 0.86
MSX1-201ENST00000382723 SELENOKQ9Y6D0 94 aa20.43■□□□□ 0.86
MSX1-201ENST00000382723 SETD2Q9BYW2 2564 aaPredicted RBP20.43■□□□□ 0.86
MSX1-201ENST00000382723 A0A1W2PS18 150 aa20.43■□□□□ 0.86
MSX1-201ENST00000382723 SLC25A5P05141 298 aaKnown RBP20.43■□□□□ 0.86
MSX1-201ENST00000382723 KLF5Q13887 457 aaPredicted RBP20.43■□□□□ 0.86
MSX1-201ENST00000382723 SIGLEC15Q6ZMC9 328 aa20.43■□□□□ 0.86
MSX1-201ENST00000382723 REC114Q7Z4M0 266 aa20.43■□□□□ 0.86
MSX1-201ENST00000382723 C1QL4Q86Z23 238 aa20.43■□□□□ 0.86
MSX1-201ENST00000382723 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP20.43■□□□□ 0.86
MSX1-201ENST00000382723 GLMPQ8WWB7 406 aa20.43■□□□□ 0.86
MSX1-201ENST00000382723 SMIM7Q9BQ49 75 aa20.43■□□□□ 0.86
MSX1-201ENST00000382723 SMPXQ9UHP9 88 aa20.43■□□□□ 0.86
MSX1-201ENST00000382723 TMEM213A2RRL7 107 aa20.42■□□□□ 0.86
MSX1-201ENST00000382723 ZNF727A8MUV8 499 aa20.42■□□□□ 0.86
MSX1-201ENST00000382723 NIPBLQ6KC79 2804 aaeCLIP20.42■□□□□ 0.86
MSX1-201ENST00000382723 LGALS9O00182 355 aa20.41■□□□□ 0.86
MSX1-201ENST00000382723 GNG5P63218 68 aa20.41■□□□□ 0.86
MSX1-201ENST00000382723 RAX2Q96IS3 184 aa20.41■□□□□ 0.86
MSX1-201ENST00000382723 OTORQ9NRC9 128 aa20.41■□□□□ 0.86
MSX1-201ENST00000382723 RPH3ALQ9UNE2 315 aa20.41■□□□□ 0.86
MSX1-201ENST00000382723 CHEK1O14757 476 aa20.41■□□□□ 0.86
MSX1-201ENST00000382723 KRTAP10-3P60369 221 aa20.41■□□□□ 0.86
MSX1-201ENST00000382723 SVBPQ8N300 66 aa20.41■□□□□ 0.86
MSX1-201ENST00000382723 NIPSNAP3BQ9BS92 247 aa20.41■□□□□ 0.86
MSX1-201ENST00000382723 PDE6HQ13956 83 aa20.4■□□□□ 0.86
MSX1-201ENST00000382723 C11orf52Q96A22 123 aa20.4■□□□□ 0.86
MSX1-201ENST00000382723 A8MWP6 167 aa20.39■□□□□ 0.86
MSX1-201ENST00000382723 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa20.39■□□□□ 0.85
MSX1-201ENST00000382723 EPDR1Q9UM22 224 aa20.39■□□□□ 0.85
MSX1-201ENST00000382723 TMA7Q9Y2S6 64 aaKnown RBP20.39■□□□□ 0.85
MSX1-201ENST00000382723 C2CD3Q4AC94 2353 aa20.38■□□□□ 0.85
MSX1-201ENST00000382723 A0A087X0K7 114 aa20.38■□□□□ 0.85
MSX1-201ENST00000382723 A0A1B0GUS0 222 aa20.38■□□□□ 0.85
MSX1-201ENST00000382723 PRB4P10163 310 aaPredicted RBP20.38■□□□□ 0.85
MSX1-201ENST00000382723 RPL11P62913 178 aaKnown RBP20.38■□□□□ 0.85
MSX1-201ENST00000382723 IGFL4Q6B9Z1 124 aa20.38■□□□□ 0.85
MSX1-201ENST00000382723 LYPD1Q8N2G4 141 aa20.38■□□□□ 0.85
MSX1-201ENST00000382723 CCL24O00175 119 aa20.37■□□□□ 0.85
MSX1-201ENST00000382723 NSUN5P1Q3KNT7 163 aa20.37■□□□□ 0.85
MSX1-201ENST00000382723 ATRAIDQ6UW56 229 aa20.37■□□□□ 0.85
MSX1-201ENST00000382723 C5orf17Q8NAS9 161 aa20.37■□□□□ 0.85
MSX1-201ENST00000382723 CMTM2Q8TAZ6 248 aa20.37■□□□□ 0.85
MSX1-201ENST00000382723 DLX4Q92988 240 aaPredicted RBP20.37■□□□□ 0.85
MSX1-201ENST00000382723 AAMDCQ9H7C9 122 aa20.37■□□□□ 0.85
MSX1-201ENST00000382723 M0R036 132 aa20.37■□□□□ 0.85
MSX1-201ENST00000382723 PEX7O00628 323 aa20.37■□□□□ 0.85
MSX1-201ENST00000382723 PSG9Q00887 426 aa20.37■□□□□ 0.85
MSX1-201ENST00000382723 RPL35P42766 123 aaKnown RBP20.36■□□□□ 0.85
MSX1-201ENST00000382723 FAM74A3Q4VXF1 159 aa20.36■□□□□ 0.85
MSX1-201ENST00000382723 C2CD4CQ8TF44 421 aa20.36■□□□□ 0.85
MSX1-201ENST00000382723 LINC00479Q96M42 142 aa20.36■□□□□ 0.85
MSX1-201ENST00000382723 TEP1Q99973 2627 aaKnown RBP20.35■□□□□ 0.85
MSX1-201ENST00000382723 IGKV3-7A0A075B6H7 116 aa20.35■□□□□ 0.85
MSX1-201ENST00000382723 C2orf70A6NJV1 201 aa20.35■□□□□ 0.85
MSX1-201ENST00000382723 HELTA6NFD8 242 aa20.35■□□□□ 0.85
MSX1-201ENST00000382723 SNAPINO95295 136 aa20.35■□□□□ 0.85
MSX1-201ENST00000382723 CBLN1P23435 193 aa20.35■□□□□ 0.85
MSX1-201ENST00000382723 AKR1C3P42330 323 aa20.35■□□□□ 0.85
MSX1-201ENST00000382723 HIST1H2BAQ96A08 127 aa20.35■□□□□ 0.85
MSX1-201ENST00000382723 TVP23CQ96ET8 276 aa20.35■□□□□ 0.85
MSX1-201ENST00000382723 TCEAL7Q9BRU2 100 aa20.35■□□□□ 0.85
MSX1-201ENST00000382723 ZNF331Q9NQX6 463 aaPredicted RBP20.35■□□□□ 0.85
MSX1-201ENST00000382723 ADARB2-AS1A8MUL3 147 aa20.34■□□□□ 0.85
MSX1-201ENST00000382723 M0R3E3 92 aa20.34■□□□□ 0.85
MSX1-201ENST00000382723 BMI1P35226 326 aa20.34■□□□□ 0.85
MSX1-201ENST00000382723 FOXL1Q12952 345 aa20.34■□□□□ 0.85
MSX1-201ENST00000382723 TMEM241Q24JQ0 296 aa20.34■□□□□ 0.85
MSX1-201ENST00000382723 CLRN3Q8NCR9 226 aa20.34■□□□□ 0.85
MSX1-201ENST00000382723 ZNF253O75346 499 aa20.33■□□□□ 0.85
MSX1-201ENST00000382723 FOLR2P14207 255 aa20.33■□□□□ 0.85
MSX1-201ENST00000382723 HLA-DMBP28068 263 aa20.33■□□□□ 0.85
MSX1-201ENST00000382723 FHL3Q13643 280 aa20.33■□□□□ 0.85
MSX1-201ENST00000382723 TCF24Q7RTU0 167 aa20.33■□□□□ 0.85
MSX1-201ENST00000382723 OR9G4Q8NGQ1 327 aa20.33■□□□□ 0.85
MSX1-201ENST00000382723 NAT8Q9UHE5 227 aa20.33■□□□□ 0.85
MSX1-201ENST00000382723 TRAV34A0A0B4J273 112 aa20.33■□□□□ 0.84
MSX1-201ENST00000382723 TCRAP04437 139 aa20.33■□□□□ 0.84
MSX1-201ENST00000382723 AWAT1Q58HT5 328 aa20.33■□□□□ 0.84
MSX1-201ENST00000382723 ATG101Q9BSB4 218 aa20.33■□□□□ 0.84
MSX1-201ENST00000382723 SDF2L1Q9HCN8 221 aa20.33■□□□□ 0.84
MSX1-201ENST00000382723 PEMTQ9UBM1 199 aa20.33■□□□□ 0.84
MSX1-201ENST00000382723 TRBV20OR9-2A0A075B6H5 130 aa20.32■□□□□ 0.84
MSX1-201ENST00000382723 CNN1P51911 297 aaKnown RBP20.32■□□□□ 0.84
MSX1-201ENST00000382723 RNF182Q8N6D2 247 aa20.32■□□□□ 0.84
MSX1-201ENST00000382723 SGK494Q96LW2 274 aa20.32■□□□□ 0.84
MSX1-201ENST00000382723 JMJD1CQ15652 2540 aa20.32■□□□□ 0.84
MSX1-201ENST00000382723 MAST4O15021 2626 aa20.32■□□□□ 0.84
MSX1-201ENST00000382723 PGPEP1LA6NFU8 196 aa20.31■□□□□ 0.84
MSX1-201ENST00000382723 MEOX2P50222 304 aa20.31■□□□□ 0.84
MSX1-201ENST00000382723 ADAMTSL5Q6ZMM2 481 aa20.31■□□□□ 0.84
MSX1-201ENST00000382723 GOLT1AQ6ZVE7 132 aa20.31■□□□□ 0.84
MSX1-201ENST00000382723 SLC50A1Q9BRV3 221 aa20.31■□□□□ 0.84
MSX1-201ENST00000382723 AURKAIP1Q9NWT8 199 aaPredicted RBP20.31■□□□□ 0.84
MSX1-201ENST00000382723 ADIRFQ15847 76 aa20.3■□□□□ 0.84
MSX1-201ENST00000382723 C16orf92Q96LL3 132 aa20.3■□□□□ 0.84
MSX1-201ENST00000382723 NRN1Q9NPD7 142 aa20.3■□□□□ 0.84
MSX1-201ENST00000382723 M0QZ24 198 aa20.29■□□□□ 0.84
MSX1-201ENST00000382723 CSN1S1P47710 185 aa20.29■□□□□ 0.84
MSX1-201ENST00000382723 NDUFA11Q86Y39 141 aa20.29■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms