RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 CSTL1Q9H114 145 aa16.71■□□□□ 0.26
UPF3A-202ENST00000375299 LOC389332A0A1B0GUA5 103 aa16.7■□□□□ 0.26
UPF3A-202ENST00000375299 CNOT1A5YKK6 2376 aaKnown RBP16.7■□□□□ 0.26
UPF3A-202ENST00000375299 IGKV1-17P01599 117 aa16.7■□□□□ 0.26
UPF3A-202ENST00000375299 GTF2H5Q6ZYL4 71 aa16.7■□□□□ 0.26
UPF3A-202ENST00000375299 WFDC8Q8IUA0 241 aa16.7■□□□□ 0.26
UPF3A-202ENST00000375299 AP1S3Q96PC3 154 aa16.7■□□□□ 0.26
UPF3A-202ENST00000375299 U3KQK5 164 aa16.7■□□□□ 0.26
UPF3A-202ENST00000375299 TTC28Q96AY4 2481 aa16.7■□□□□ 0.26
UPF3A-202ENST00000375299 SERTM2A0A1B0GWG4 89 aa16.69■□□□□ 0.26
UPF3A-202ENST00000375299 K7EM74 188 aa16.69■□□□□ 0.26
UPF3A-202ENST00000375299 PRB4P10163 310 aaPredicted RBP16.69■□□□□ 0.26
UPF3A-202ENST00000375299 TNFRSF14Q92956 283 aa16.69■□□□□ 0.26
UPF3A-202ENST00000375299 JMJD8Q96S16 334 aa16.69■□□□□ 0.26
UPF3A-202ENST00000375299 KAAG1Q9UBP8 84 aa16.69■□□□□ 0.26
UPF3A-202ENST00000375299 PRSS33Q8NF86 280 aa16.69■□□□□ 0.26
UPF3A-202ENST00000375299 PRELID3AQ96N28 172 aa16.69■□□□□ 0.26
UPF3A-202ENST00000375299 MEGF9Q9H1U4 602 aa16.69■□□□□ 0.26
UPF3A-202ENST00000375299 FBXL15Q9H469 300 aa16.69■□□□□ 0.26
UPF3A-202ENST00000375299 IGHV1-3A0A0C4DH29 117 aa16.68■□□□□ 0.26
UPF3A-202ENST00000375299 SMAD7O15105 426 aaKnown RBP16.68■□□□□ 0.26
UPF3A-202ENST00000375299 CACNG7P62955 275 aa16.68■□□□□ 0.26
UPF3A-202ENST00000375299 HSD52Q0P140 79 aa16.68■□□□□ 0.26
UPF3A-202ENST00000375299 C8orf49Q96NF6 230 aa16.68■□□□□ 0.26
UPF3A-202ENST00000375299 INSIG2Q9Y5U4 225 aa16.68■□□□□ 0.26
UPF3A-202ENST00000375299 LAMA5O15230 3695 aa16.68■□□□□ 0.26
UPF3A-202ENST00000375299 CT45A10P0DMU9 189 aa16.67■□□□□ 0.26
UPF3A-202ENST00000375299 FAM104BQ5XKR9 115 aa16.67■□□□□ 0.26
UPF3A-202ENST00000375299 LYZL1Q6UWQ5 148 aa16.67■□□□□ 0.26
UPF3A-202ENST00000375299 OR9G4Q8NGQ1 327 aa16.67■□□□□ 0.26
UPF3A-202ENST00000375299 MALRD1Q5VYJ5 2156 aa16.67■□□□□ 0.26
UPF3A-202ENST00000375299 TMEM213A2RRL7 107 aa16.67■□□□□ 0.26
UPF3A-202ENST00000375299 SAP30O75446 220 aa16.67■□□□□ 0.26
UPF3A-202ENST00000375299 ORMDL3Q8N138 153 aa16.67■□□□□ 0.26
UPF3A-202ENST00000375299 FER1L6-AS1Q8NA97 138 aa16.67■□□□□ 0.26
UPF3A-202ENST00000375299 MGAQ8IWI9 3026 aa16.67■□□□□ 0.26
UPF3A-202ENST00000375299 A1L4Q6 167 aa16.66■□□□□ 0.26
UPF3A-202ENST00000375299 MRPS12O15235 138 aaKnown RBP16.66■□□□□ 0.26
UPF3A-202ENST00000375299 IGLV1-47P01700 117 aa16.66■□□□□ 0.26
UPF3A-202ENST00000375299 DLX1P56177 255 aa16.66■□□□□ 0.26
UPF3A-202ENST00000375299 BSPH1Q075Z2 132 aa16.66■□□□□ 0.26
UPF3A-202ENST00000375299 AMN1Q8IY45 258 aa16.66■□□□□ 0.26
UPF3A-202ENST00000375299 ZNF414Q96IQ9 312 aa16.66■□□□□ 0.26
UPF3A-202ENST00000375299 K7EP34 96 aa16.66■□□□□ 0.26
UPF3A-202ENST00000375299 M0R3E3 92 aa16.66■□□□□ 0.26
UPF3A-202ENST00000375299 HBDP02042 147 aa16.66■□□□□ 0.26
UPF3A-202ENST00000375299 FAM57AQ8TBR7 257 aa16.66■□□□□ 0.26
UPF3A-202ENST00000375299 THYN1Q9P016 225 aa16.66■□□□□ 0.26
UPF3A-202ENST00000375299 TMEM189A5PLL7 270 aa16.65■□□□□ 0.26
UPF3A-202ENST00000375299 H3BUT2 72 aa16.65■□□□□ 0.26
UPF3A-202ENST00000375299 SIVA1O15304 175 aa16.65■□□□□ 0.26
UPF3A-202ENST00000375299 KIR3DS1Q14943 382 aa16.65■□□□□ 0.26
UPF3A-202ENST00000375299 K7EIM0 57 aa16.65■□□□□ 0.26
UPF3A-202ENST00000375299 ZNF491Q8N8L2 437 aa16.65■□□□□ 0.26
UPF3A-202ENST00000375299 HILPDAQ9Y5L2 63 aa16.65■□□□□ 0.26
UPF3A-202ENST00000375299 PRB3Q04118 309 aaPredicted RBP16.64■□□□□ 0.25
UPF3A-202ENST00000375299 OR4X2Q8NGF9 303 aa16.64■□□□□ 0.25
UPF3A-202ENST00000375299 RNF125Q96EQ8 232 aa16.64■□□□□ 0.25
UPF3A-202ENST00000375299 SMG1Q96Q15 3661 aaKnown RBP16.64■□□□□ 0.25
UPF3A-202ENST00000375299 TMSB15BA0A087X1C1 80 aa16.64■□□□□ 0.25
UPF3A-202ENST00000375299 C16orf97H3BN30 126 aa16.64■□□□□ 0.25
UPF3A-202ENST00000375299 BUB1B-PAK6H3BSN5 160 aa16.64■□□□□ 0.25
UPF3A-202ENST00000375299 TCTAP57738 103 aa16.64■□□□□ 0.25
UPF3A-202ENST00000375299 PAX8Q06710 450 aa16.64■□□□□ 0.25
UPF3A-202ENST00000375299 MRPL51Q4U2R6 128 aaKnown RBP16.64■□□□□ 0.25
UPF3A-202ENST00000375299 ADAMTSL5Q6ZMM2 481 aa16.64■□□□□ 0.25
UPF3A-202ENST00000375299 FXYD7P58549 80 aa16.63■□□□□ 0.25
UPF3A-202ENST00000375299 A0A0G2JLM5 398 aa16.63■□□□□ 0.25
UPF3A-202ENST00000375299 IL4P05112 153 aa16.63■□□□□ 0.25
UPF3A-202ENST00000375299 PLGLAQ15195 96 aa16.63■□□□□ 0.25
UPF3A-202ENST00000375299 IFI27L1Q96BM0 104 aa16.63■□□□□ 0.25
UPF3A-202ENST00000375299 SRSF8Q9BRL6 282 aaKnown RBP16.63■□□□□ 0.25
UPF3A-202ENST00000375299 SH2D1AO60880 128 aa16.62■□□□□ 0.25
UPF3A-202ENST00000375299 ABCA1O95477 2261 aa16.62■□□□□ 0.25
UPF3A-202ENST00000375299 RP1L1Q8IWN7 2480 aaPredicted RBP16.62■□□□□ 0.25
UPF3A-202ENST00000375299 FCGR2BP31994 310 aaPredicted RBP16.62■□□□□ 0.25
UPF3A-202ENST00000375299 RNASE6Q93091 150 aaKnown RBP16.62■□□□□ 0.25
UPF3A-202ENST00000375299 NAA38Q9BRA0 125 aaKnown RBP16.62■□□□□ 0.25
UPF3A-202ENST00000375299 COL25A1Q9BXS0 654 aaPredicted RBP16.62■□□□□ 0.25
UPF3A-202ENST00000375299 AAMDCQ9H7C9 122 aa16.62■□□□□ 0.25
UPF3A-202ENST00000375299 THBDP07204 575 aa16.61■□□□□ 0.25
UPF3A-202ENST00000375299 OR2K2Q8NGT1 345 aa16.61■□□□□ 0.25
UPF3A-202ENST00000375299 PDE6HQ13956 83 aa16.6■□□□□ 0.25
UPF3A-202ENST00000375299 WI2-2373I1.2A0A1W2PRP0 233 aa16.6■□□□□ 0.25
UPF3A-202ENST00000375299 RPEQ96AT9 228 aa16.6■□□□□ 0.25
UPF3A-202ENST00000375299 G3V4G9 280 aa16.59■□□□□ 0.25
UPF3A-202ENST00000375299 CNIH1O95406 144 aa16.59■□□□□ 0.25
UPF3A-202ENST00000375299 NPYP01303 97 aa16.59■□□□□ 0.25
UPF3A-202ENST00000375299 NMUP48645 174 aa16.59■□□□□ 0.25
UPF3A-202ENST00000375299 PCP2Q8IVA1 136 aa16.59■□□□□ 0.25
UPF3A-202ENST00000375299 DYNLRB1Q9NP97 96 aa16.59■□□□□ 0.25
UPF3A-202ENST00000375299 A0A0G2JNJ9 132 aa16.59■□□□□ 0.25
UPF3A-202ENST00000375299 CKS2P33552 79 aa16.59■□□□□ 0.25
UPF3A-202ENST00000375299 RIPPLY3P57055 190 aa16.59■□□□□ 0.25
UPF3A-202ENST00000375299 RAB37Q96AX2 223 aa16.59■□□□□ 0.25
UPF3A-202ENST00000375299 ABHD17AQ96GS6 310 aa16.59■□□□□ 0.25
UPF3A-202ENST00000375299 RNF5Q99942 180 aa16.59■□□□□ 0.25
UPF3A-202ENST00000375299 Q9UFV3 132 aa16.59■□□□□ 0.25
UPF3A-202ENST00000375299 AKAP13Q12802 2813 aa16.59■□□□□ 0.25
UPF3A-202ENST00000375299 ZNF318Q5VUA4 2279 aa16.58■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 77 ms