RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 IGHV4-30-2A0A087WSY4 118 aa11.93□□□□□ -0.5
COL17A1-201ENST00000353479 PAX9P55771 341 aa11.93□□□□□ -0.5
COL17A1-201ENST00000353479 ERCC8Q13216 396 aa11.93□□□□□ -0.5
COL17A1-201ENST00000353479 TMEM170AQ8WVE7 144 aa11.93□□□□□ -0.5
COL17A1-201ENST00000353479 LHBP01229 141 aa11.93□□□□□ -0.5
COL17A1-201ENST00000353479 DEFB131AP59861 70 aa11.93□□□□□ -0.5
COL17A1-201ENST00000353479 KLF2Q9Y5W3 355 aaPredicted RBP11.93□□□□□ -0.5
COL17A1-201ENST00000353479 A0A1B0GW64 132 aa11.92□□□□□ -0.5
COL17A1-201ENST00000353479 TMEM190Q8WZ59 177 aa11.92□□□□□ -0.5
COL17A1-201ENST00000353479 MRAP2Q96G30 205 aa11.92□□□□□ -0.5
COL17A1-201ENST00000353479 TRGV1A0A0A0MS02 117 aa11.92□□□□□ -0.5
COL17A1-201ENST00000353479 LYZL1Q6UWQ5 148 aa11.92□□□□□ -0.5
COL17A1-201ENST00000353479 NRN1Q9NPD7 142 aa11.92□□□□□ -0.5
COL17A1-201ENST00000353479 JKAMPQ9P055 326 aa11.92□□□□□ -0.5
COL17A1-201ENST00000353479 NDUFA3O95167 84 aa11.92□□□□□ -0.5
COL17A1-201ENST00000353479 IGHV4-39P01824 125 aa11.92□□□□□ -0.5
COL17A1-201ENST00000353479 YPEL3P61236 119 aaPredicted RBP11.92□□□□□ -0.5
COL17A1-201ENST00000353479 IGFBPL1Q8WX77 278 aa11.92□□□□□ -0.5
COL17A1-201ENST00000353479 COX6CP09669 75 aa11.92□□□□□ -0.5
COL17A1-201ENST00000353479 RIPPLY3P57055 190 aa11.92□□□□□ -0.5
COL17A1-201ENST00000353479 RNF182Q8N6D2 247 aa11.92□□□□□ -0.5
COL17A1-201ENST00000353479 Q8NFD4 153 aa11.92□□□□□ -0.5
COL17A1-201ENST00000353479 DENND4AQ7Z401 1863 aa11.92□□□□□ -0.5
COL17A1-201ENST00000353479 IFI27P40305 119 aaPredicted RBP11.91□□□□□ -0.5
COL17A1-201ENST00000353479 DEFB112Q30KQ8 113 aa11.91□□□□□ -0.5
COL17A1-201ENST00000353479 IGKV3D-20A0A0C4DH25 116 aa11.91□□□□□ -0.5
COL17A1-201ENST00000353479 PPBPP02775 128 aa11.91□□□□□ -0.5
COL17A1-201ENST00000353479 SRSF1Q07955 248 aaKnown RBP eCLIP11.91□□□□□ -0.5
COL17A1-201ENST00000353479 COL5A1-AS1Q5SY13 56 aa11.91□□□□□ -0.5
COL17A1-201ENST00000353479 GNB1LQ9BYB4 327 aa11.91□□□□□ -0.5
COL17A1-201ENST00000353479 ZMAT5Q9UDW3 170 aaKnown RBP11.91□□□□□ -0.5
COL17A1-201ENST00000353479 LBHQ53QV2 105 aaPredicted RBP11.91□□□□□ -0.5
COL17A1-201ENST00000353479 H3BRM9 83 aa11.91□□□□□ -0.5
COL17A1-201ENST00000353479 IGHV3-53P01767 116 aa11.91□□□□□ -0.5
COL17A1-201ENST00000353479 VCX2Q9H322 139 aa11.91□□□□□ -0.5
COL17A1-201ENST00000353479 KIAA1549LQ6ZVL6 1849 aa11.91□□□□□ -0.5
COL17A1-201ENST00000353479 TMEM131Q92545 1883 aa11.9□□□□□ -0.5
COL17A1-201ENST00000353479 PCDH15Q96QU1 1955 aa11.9□□□□□ -0.5
COL17A1-201ENST00000353479 INSP01308 110 aa11.9□□□□□ -0.5
COL17A1-201ENST00000353479 JOSD1Q15040 202 aaPredicted RBP11.9□□□□□ -0.5
COL17A1-201ENST00000353479 COPS9Q8WXC6 57 aa11.9□□□□□ -0.5
COL17A1-201ENST00000353479 LINC00479Q96M42 142 aa11.9□□□□□ -0.5
COL17A1-201ENST00000353479 NCR2O95944 276 aa11.9□□□□□ -0.5
COL17A1-201ENST00000353479 ZNF415Q09FC8 603 aa11.9□□□□□ -0.5
COL17A1-201ENST00000353479 ATP5L2Q7Z4Y8 100 aa11.9□□□□□ -0.5
COL17A1-201ENST00000353479 ZNF106Q9H2Y7 1883 aaKnown RBP11.9□□□□□ -0.5
COL17A1-201ENST00000353479 SNAI2O43623 268 aa11.9□□□□□ -0.5
COL17A1-201ENST00000353479 IGHV4-59P01825 116 aa11.9□□□□□ -0.5
COL17A1-201ENST00000353479 LINC00614P0C842 121 aa11.89□□□□□ -0.51
COL17A1-201ENST00000353479 TMEM249Q2WGJ8 235 aa11.89□□□□□ -0.51
COL17A1-201ENST00000353479 NXT2Q9NPJ8 142 aaKnown RBP11.89□□□□□ -0.51
COL17A1-201ENST00000353479 PLA2G5P39877 138 aa11.89□□□□□ -0.51
COL17A1-201ENST00000353479 OR13C6PQ8NH95 151 aa11.89□□□□□ -0.51
COL17A1-201ENST00000353479 CHCHD5Q9BSY4 110 aa11.89□□□□□ -0.51
COL17A1-201ENST00000353479 OTOGLQ3ZCN5 2332 aa11.89□□□□□ -0.51
COL17A1-201ENST00000353479 HOXA5P20719 270 aa11.89□□□□□ -0.51
COL17A1-201ENST00000353479 DEFB104AQ8WTQ1 72 aa11.89□□□□□ -0.51
COL17A1-201ENST00000353479 COTL1Q14019 142 aa11.89□□□□□ -0.51
COL17A1-201ENST00000353479 PMCHL2Q9BQD1 86 aa11.89□□□□□ -0.51
COL17A1-201ENST00000353479 CYSLTR1Q9Y271 337 aa11.89□□□□□ -0.51
COL17A1-201ENST00000353479 ST6GALNAC6Q969X2 333 aa11.89□□□□□ -0.51
COL17A1-201ENST00000353479 C1QTNF4Q9BXJ3 329 aa11.89□□□□□ -0.51
COL17A1-201ENST00000353479 PDE6HQ13956 83 aa11.88□□□□□ -0.51
COL17A1-201ENST00000353479 PET117Q6UWS5 81 aa11.88□□□□□ -0.51
COL17A1-201ENST00000353479 ERASQ7Z444 233 aa11.88□□□□□ -0.51
COL17A1-201ENST00000353479 HBDP02042 147 aa11.88□□□□□ -0.51
COL17A1-201ENST00000353479 CXCL1P09341 107 aa11.88□□□□□ -0.51
COL17A1-201ENST00000353479 Q86TA4 180 aa11.88□□□□□ -0.51
COL17A1-201ENST00000353479 C14orf144Q96I85 54 aa11.88□□□□□ -0.51
COL17A1-201ENST00000353479 TMEM242Q9NWH2 141 aa11.88□□□□□ -0.51
COL17A1-201ENST00000353479 CIDEAO60543 219 aa11.88□□□□□ -0.51
COL17A1-201ENST00000353479 RNASE1P07998 156 aaKnown RBP11.88□□□□□ -0.51
COL17A1-201ENST00000353479 DDTP30046 118 aa11.88□□□□□ -0.51
COL17A1-201ENST00000353479 ABCA1O95477 2261 aa11.88□□□□□ -0.51
COL17A1-201ENST00000353479 CREBBPQ92793 2442 aa11.87□□□□□ -0.51
COL17A1-201ENST00000353479 PRADC1Q9BSG0 188 aa11.87□□□□□ -0.51
COL17A1-201ENST00000353479 ACACBO00763 2458 aa11.87□□□□□ -0.51
COL17A1-201ENST00000353479 ORMDL2Q53FV1 153 aa11.87□□□□□ -0.51
COL17A1-201ENST00000353479 MALP21145 153 aa11.87□□□□□ -0.51
COL17A1-201ENST00000353479 OR9G4Q8NGQ1 327 aa11.87□□□□□ -0.51
COL17A1-201ENST00000353479 PRORYQ9H606 182 aa11.87□□□□□ -0.51
COL17A1-201ENST00000353479 D6R8Y8 96 aa11.87□□□□□ -0.51
COL17A1-201ENST00000353479 IGHV4-38-2P0DP08 117 aa11.87□□□□□ -0.51
COL17A1-201ENST00000353479 CD28P10747 220 aa11.87□□□□□ -0.51
COL17A1-201ENST00000353479 CFAP161Q6P656 301 aa11.87□□□□□ -0.51
COL17A1-201ENST00000353479 NIT1Q86X76 327 aa11.87□□□□□ -0.51
COL17A1-201ENST00000353479 C8orf31Q8N9H6 132 aa11.87□□□□□ -0.51
COL17A1-201ENST00000353479 TCF21O43680 179 aa11.86□□□□□ -0.51
COL17A1-201ENST00000353479 FOXL1Q12952 345 aa11.86□□□□□ -0.51
COL17A1-201ENST00000353479 DAZAP2Q15038 168 aaPredicted RBP11.86□□□□□ -0.51
COL17A1-201ENST00000353479 TCTEX1D4Q5JR98 221 aa11.86□□□□□ -0.51
COL17A1-201ENST00000353479 NUP35Q8NFH5 326 aa11.86□□□□□ -0.51
COL17A1-201ENST00000353479 VPREB3Q9UKI3 123 aa11.86□□□□□ -0.51
COL17A1-201ENST00000353479 HIST1H2BKO60814 126 aa11.86□□□□□ -0.51
COL17A1-201ENST00000353479 HIST1H2BJP06899 126 aa11.86□□□□□ -0.51
COL17A1-201ENST00000353479 FABP2P12104 132 aa11.86□□□□□ -0.51
COL17A1-201ENST00000353479 HIST1H2BOP23527 126 aa11.86□□□□□ -0.51
COL17A1-201ENST00000353479 HIST1H2BBP33778 126 aa11.86□□□□□ -0.51
COL17A1-201ENST00000353479 HIST1H2BDP58876 126 aa11.86□□□□□ -0.51
COL17A1-201ENST00000353479 HIST1H2BCP62807 126 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms