RNA–Protein interactions for RNA: ENST00000342494.7

UBE3B-202, Transcript of ubiquitin protein ligase E3B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UBE3B, Length 5,722 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3B-202ENST00000342494 G3V318 75 aa12.13□□□□□ -0.47
UBE3B-202ENST00000342494 MLANAQ16655 118 aa12.13□□□□□ -0.47
UBE3B-202ENST00000342494 PRR31Q5SQ13 230 aa12.12□□□□□ -0.47
UBE3B-202ENST00000342494 SHANK2-AS3Q9BTD1 123 aa12.12□□□□□ -0.47
UBE3B-202ENST00000342494 PI4KAP42356 2102 aa12.12□□□□□ -0.47
UBE3B-202ENST00000342494 A0A1B0GV90 55 aa12.12□□□□□ -0.47
UBE3B-202ENST00000342494 C15orf62A8K5M9 175 aa12.12□□□□□ -0.47
UBE3B-202ENST00000342494 ITGB1BP1O14713 200 aa12.12□□□□□ -0.47
UBE3B-202ENST00000342494 IL17RELQ6ZVW7 336 aa12.12□□□□□ -0.47
UBE3B-202ENST00000342494 INS-IGF2F8WCM5 200 aa12.12□□□□□ -0.47
UBE3B-202ENST00000342494 FGF16O43320 207 aa12.12□□□□□ -0.47
UBE3B-202ENST00000342494 APOC4P55056 127 aa12.12□□□□□ -0.47
UBE3B-202ENST00000342494 CFHR3Q02985 330 aa12.12□□□□□ -0.47
UBE3B-202ENST00000342494 FAM90A2PQ658T7 463 aa12.12□□□□□ -0.47
UBE3B-202ENST00000342494 DERL1Q9BUN8 251 aa12.12□□□□□ -0.47
UBE3B-202ENST00000342494 Q6ZS49 121 aa12.11□□□□□ -0.47
UBE3B-202ENST00000342494 ERG28Q9UKR5 140 aa12.11□□□□□ -0.47
UBE3B-202ENST00000342494 NDUFB8O95169 186 aa12.11□□□□□ -0.47
UBE3B-202ENST00000342494 ATRAIDQ6UW56 229 aa12.11□□□□□ -0.47
UBE3B-202ENST00000342494 SBF1O95248 1867 aa12.11□□□□□ -0.47
UBE3B-202ENST00000342494 DKK1O94907 266 aa12.11□□□□□ -0.47
UBE3B-202ENST00000342494 SPINK13Q1W4C9 94 aa12.11□□□□□ -0.47
UBE3B-202ENST00000342494 LIME1Q9H400 295 aa12.11□□□□□ -0.47
UBE3B-202ENST00000342494 LAMTOR2Q9Y2Q5 125 aa12.11□□□□□ -0.47
UBE3B-202ENST00000342494 ARFGEF3Q5TH69 2177 aa12.11□□□□□ -0.47
UBE3B-202ENST00000342494 ATXN8Q156A1 80 aa12.11□□□□□ -0.47
UBE3B-202ENST00000342494 TRAV1-1A0A0B4J248 108 aa12.1□□□□□ -0.47
UBE3B-202ENST00000342494 KNCNA6PVL3 124 aa12.1□□□□□ -0.47
UBE3B-202ENST00000342494 SSBP2P81877 361 aaPredicted RBP12.1□□□□□ -0.47
UBE3B-202ENST00000342494 MTURNQ8N3F0 131 aa12.1□□□□□ -0.47
UBE3B-202ENST00000342494 LAMTOR3Q9UHA4 124 aa12.1□□□□□ -0.47
UBE3B-202ENST00000342494 PDE6HQ13956 83 aa12.1□□□□□ -0.47
UBE3B-202ENST00000342494 MS4A6AQ9H2W1 248 aa12.1□□□□□ -0.47
UBE3B-202ENST00000342494 QRFPP83859 136 aa12.1□□□□□ -0.47
UBE3B-202ENST00000342494 TCTEX1D4Q5JR98 221 aa12.1□□□□□ -0.47
UBE3B-202ENST00000342494 LINC01551Q86U37 167 aa12.1□□□□□ -0.47
UBE3B-202ENST00000342494 GAGE12JA6NER3 117 aa12.09□□□□□ -0.47
UBE3B-202ENST00000342494 ARMS2P0C7Q2 107 aa12.09□□□□□ -0.47
UBE3B-202ENST00000342494 GAGE1Q13065 139 aa12.09□□□□□ -0.47
UBE3B-202ENST00000342494 GAGE4Q13068 117 aa12.09□□□□□ -0.47
UBE3B-202ENST00000342494 GAGE5Q13069 117 aa12.09□□□□□ -0.47
UBE3B-202ENST00000342494 GAGE13Q4V321 117 aa12.09□□□□□ -0.47
UBE3B-202ENST00000342494 TRAV16A0A0A6YYK6 109 aaPredicted RBP12.09□□□□□ -0.47
UBE3B-202ENST00000342494 RHODO00212 210 aa12.09□□□□□ -0.47
UBE3B-202ENST00000342494 WNK2Q9Y3S1 2297 aa12.09□□□□□ -0.47
UBE3B-202ENST00000342494 ZNF561-AS1K7EIQ3 104 aa12.09□□□□□ -0.47
UBE3B-202ENST00000342494 THSD7BQ9C0I4 1608 aa12.09□□□□□ -0.47
UBE3B-202ENST00000342494 FNDC10F2Z333 226 aa12.08□□□□□ -0.47
UBE3B-202ENST00000342494 LOXP28300 417 aaPredicted RBP12.08□□□□□ -0.47
UBE3B-202ENST00000342494 DMRTA1Q5VZB9 504 aa12.08□□□□□ -0.47
UBE3B-202ENST00000342494 RASL11AQ6T310 242 aa12.08□□□□□ -0.47
UBE3B-202ENST00000342494 PIP4P1Q86T03 277 aa12.08□□□□□ -0.47
UBE3B-202ENST00000342494 DOCK10Q96BY6 2186 aa12.08□□□□□ -0.47
UBE3B-202ENST00000342494 EREGO14944 169 aa12.08□□□□□ -0.48
UBE3B-202ENST00000342494 Q6ZR03 302 aa12.08□□□□□ -0.48
UBE3B-202ENST00000342494 PRIMA1Q86XR5 153 aa12.08□□□□□ -0.48
UBE3B-202ENST00000342494 NUP35Q8NFH5 326 aa12.08□□□□□ -0.48
UBE3B-202ENST00000342494 ORAOV1Q8WV07 137 aa12.08□□□□□ -0.48
UBE3B-202ENST00000342494 HS3ST6Q96QI5 342 aa12.08□□□□□ -0.48
UBE3B-202ENST00000342494 SPOCK3Q9BQ16 436 aa12.08□□□□□ -0.48
UBE3B-202ENST00000342494 NOTCH3Q9UM47 2321 aa12.08□□□□□ -0.48
UBE3B-202ENST00000342494 COL4A6Q14031 1691 aa12.08□□□□□ -0.48
UBE3B-202ENST00000342494 YPEL3P61236 119 aaPredicted RBP12.07□□□□□ -0.48
UBE3B-202ENST00000342494 TRPT1Q86TN4 253 aaKnown RBP12.07□□□□□ -0.48
UBE3B-202ENST00000342494 LY6G5BQ8NDX9 201 aa12.07□□□□□ -0.48
UBE3B-202ENST00000342494 ZMAT4Q9H898 229 aa12.07□□□□□ -0.48
UBE3B-202ENST00000342494 A0A0G2JRQ6 117 aa12.07□□□□□ -0.48
UBE3B-202ENST00000342494 Q86TA4 180 aa12.07□□□□□ -0.48
UBE3B-202ENST00000342494 FAM215AQ9Y5M1 114 aa12.07□□□□□ -0.48
UBE3B-202ENST00000342494 A0A1B0GV72 72 aa12.07□□□□□ -0.48
UBE3B-202ENST00000342494 TMEM242Q9NWH2 141 aa12.07□□□□□ -0.48
UBE3B-202ENST00000342494 MYMXA0A1B0GTQ4 84 aa12.07□□□□□ -0.48
UBE3B-202ENST00000342494 HIST1H2BKO60814 126 aa12.07□□□□□ -0.48
UBE3B-202ENST00000342494 HIST1H2BJP06899 126 aa12.07□□□□□ -0.48
UBE3B-202ENST00000342494 CGB3P0DN86 165 aa12.07□□□□□ -0.48
UBE3B-202ENST00000342494 HIST1H2BOP23527 126 aa12.07□□□□□ -0.48
UBE3B-202ENST00000342494 HIST1H2BBP33778 126 aa12.07□□□□□ -0.48
UBE3B-202ENST00000342494 HIST1H2BDP58876 126 aa12.07□□□□□ -0.48
UBE3B-202ENST00000342494 HIST1H2BCP62807 126 aa12.07□□□□□ -0.48
UBE3B-202ENST00000342494 HIST2H2BEQ16778 126 aa12.07□□□□□ -0.48
UBE3B-202ENST00000342494 HIST2H2BFQ5QNW6 126 aaPredicted RBP12.07□□□□□ -0.48
UBE3B-202ENST00000342494 DMRTC2Q8IXT2 367 aaPredicted RBP12.07□□□□□ -0.48
UBE3B-202ENST00000342494 HIST1H2BHQ93079 126 aa12.07□□□□□ -0.48
UBE3B-202ENST00000342494 HIST1H2BNQ99877 126 aa12.07□□□□□ -0.48
UBE3B-202ENST00000342494 HIST1H2BMQ99879 126 aa12.07□□□□□ -0.48
UBE3B-202ENST00000342494 KLK9Q9UKQ9 250 aa12.07□□□□□ -0.48
UBE3B-202ENST00000342494 LMO1P25800 156 aa12.06□□□□□ -0.48
UBE3B-202ENST00000342494 ZNF479Q96JC4 524 aa12.06□□□□□ -0.48
UBE3B-202ENST00000342494 FNDC4Q9H6D8 234 aaPredicted RBP12.06□□□□□ -0.48
UBE3B-202ENST00000342494 PROK2Q9HC23 129 aa12.06□□□□□ -0.48
UBE3B-202ENST00000342494 TCF20Q9UGU0 1960 aaKnown RBP12.06□□□□□ -0.48
UBE3B-202ENST00000342494 IGHV3-16A0A0C4DH30 117 aa12.06□□□□□ -0.48
UBE3B-202ENST00000342494 GAGE12BA1L429 117 aa12.06□□□□□ -0.48
UBE3B-202ENST00000342494 GAGE7O76087 117 aa12.06□□□□□ -0.48
UBE3B-202ENST00000342494 GAGE12FP0CL80 117 aa12.06□□□□□ -0.48
UBE3B-202ENST00000342494 GAGE12GP0CL81 117 aa12.06□□□□□ -0.48
UBE3B-202ENST00000342494 GAGE12IP0CL82 117 aa12.06□□□□□ -0.48
UBE3B-202ENST00000342494 TMEM158Q8WZ71 300 aa12.06□□□□□ -0.48
UBE3B-202ENST00000342494 AZU1P20160 251 aa12.06□□□□□ -0.48
UBE3B-202ENST00000342494 CYTL1Q9NRR1 136 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 61.1 ms