RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 Q8N7P7 452 aa9.58□□□□□ -0.88
USP1-201ENST00000339950 C1orf159Q96HA4 380 aa9.58□□□□□ -0.88
USP1-201ENST00000339950 TRAV8-6A0A0B4J262 113 aa9.58□□□□□ -0.88
USP1-201ENST00000339950 EVI2AP22794 236 aa9.58□□□□□ -0.88
USP1-201ENST00000339950 HLA-DMBP28068 263 aa9.58□□□□□ -0.88
USP1-201ENST00000339950 NDUFA4L2Q9NRX3 87 aa9.58□□□□□ -0.88
USP1-201ENST00000339950 YPEL3P61236 119 aaPredicted RBP9.57□□□□□ -0.88
USP1-201ENST00000339950 ZNF329Q86UD4 541 aa9.57□□□□□ -0.88
USP1-201ENST00000339950 C18orf32Q8TCD1 76 aa9.57□□□□□ -0.88
USP1-201ENST00000339950 DDB2Q92466 427 aa9.57□□□□□ -0.88
USP1-201ENST00000339950 C20orf144Q9BQM9 153 aa9.57□□□□□ -0.88
USP1-201ENST00000339950 GNB1LQ9BYB4 327 aa9.57□□□□□ -0.88
USP1-201ENST00000339950 RPP21Q9H633 154 aaKnown RBP9.57□□□□□ -0.88
USP1-201ENST00000339950 SPCS1Q9Y6A9 102 aa9.57□□□□□ -0.88
USP1-201ENST00000339950 ACANP16112 2415 aa9.57□□□□□ -0.88
USP1-201ENST00000339950 CSMD1Q96PZ7 3565 aa9.57□□□□□ -0.88
USP1-201ENST00000339950 C22orf46C9J442 243 aa9.57□□□□□ -0.88
USP1-201ENST00000339950 GLMPQ8WWB7 406 aa9.57□□□□□ -0.88
USP1-201ENST00000339950 CST9LQ9H4G1 147 aa9.57□□□□□ -0.88
USP1-201ENST00000339950 TP53TG3Q9ULZ0 132 aa9.57□□□□□ -0.88
USP1-201ENST00000339950 PKD1L2Q7Z442 2459 aa9.57□□□□□ -0.88
USP1-201ENST00000339950 IGHV1-3A0A0C4DH29 117 aa9.57□□□□□ -0.88
USP1-201ENST00000339950 IGKV3-20P01619 116 aa9.57□□□□□ -0.88
USP1-201ENST00000339950 IGHV3-11P01762 117 aa9.57□□□□□ -0.88
USP1-201ENST00000339950 SRD5A1P18405 259 aa9.57□□□□□ -0.88
USP1-201ENST00000339950 ZNF672Q499Z4 452 aaPredicted RBP9.57□□□□□ -0.88
USP1-201ENST00000339950 JMJD1CQ15652 2540 aa9.57□□□□□ -0.88
USP1-201ENST00000339950 FN1P02751 2386 aaKnown RBP9.57□□□□□ -0.88
USP1-201ENST00000339950 ARMS2P0C7Q2 107 aa9.56□□□□□ -0.88
USP1-201ENST00000339950 IGLL1P15814 213 aa9.56□□□□□ -0.88
USP1-201ENST00000339950 APOBEC3AP31941 199 aaPredicted RBP9.56□□□□□ -0.88
USP1-201ENST00000339950 PDLIM4P50479 330 aa9.56□□□□□ -0.88
USP1-201ENST00000339950 SCGB1D4Q6XE38 83 aa9.56□□□□□ -0.88
USP1-201ENST00000339950 TEX45Q8NA69 505 aa9.56□□□□□ -0.88
USP1-201ENST00000339950 ZNF436-AS1Q8NC38 126 aaPredicted RBP9.56□□□□□ -0.88
USP1-201ENST00000339950 OR4A5Q8NH83 315 aa9.56□□□□□ -0.88
USP1-201ENST00000339950 BCL6BQ8N143 479 aaPredicted RBP9.56□□□□□ -0.88
USP1-201ENST00000339950 SIGLEC9Q9Y336 463 aa9.56□□□□□ -0.88
USP1-201ENST00000339950 C9JCJ5 164 aa9.56□□□□□ -0.88
USP1-201ENST00000339950 H7C2G1 150 aa9.56□□□□□ -0.88
USP1-201ENST00000339950 NDPQ00604 133 aa9.56□□□□□ -0.88
USP1-201ENST00000339950 LINC00322Q6ZN03 302 aaPredicted RBP9.56□□□□□ -0.88
USP1-201ENST00000339950 CACNG8Q8WXS5 425 aa9.56□□□□□ -0.88
USP1-201ENST00000339950 SMIM12Q96EX1 92 aa9.56□□□□□ -0.88
USP1-201ENST00000339950 GRAMD2BQ96HH9 432 aa9.56□□□□□ -0.88
USP1-201ENST00000339950 RAB1BQ9H0U4 201 aa9.56□□□□□ -0.88
USP1-201ENST00000339950 THBDP07204 575 aa9.56□□□□□ -0.88
USP1-201ENST00000339950 CKS2P33552 79 aa9.56□□□□□ -0.88
USP1-201ENST00000339950 EIF4EBP1Q13541 118 aaPredicted RBP9.56□□□□□ -0.88
USP1-201ENST00000339950 FAM181BA6NEQ2 426 aa9.55□□□□□ -0.88
USP1-201ENST00000339950 LHBP01229 141 aa9.55□□□□□ -0.88
USP1-201ENST00000339950 CFHR2P36980 270 aa9.55□□□□□ -0.88
USP1-201ENST00000339950 LGALS7P47929 136 aa9.55□□□□□ -0.88
USP1-201ENST00000339950 DNLZQ5SXM8 178 aa9.55□□□□□ -0.88
USP1-201ENST00000339950 MRPL32Q9BYC8 188 aaKnown RBP9.55□□□□□ -0.88
USP1-201ENST00000339950 SLC25A39Q9BZJ4 359 aaPredicted RBP9.55□□□□□ -0.88
USP1-201ENST00000339950 TRBV9A0A0B4J1U6 114 aa9.55□□□□□ -0.88
USP1-201ENST00000339950 TMEM213A2RRL7 107 aa9.55□□□□□ -0.88
USP1-201ENST00000339950 TMEM189A5PLL7 270 aa9.55□□□□□ -0.88
USP1-201ENST00000339950 TCRAP04437 139 aa9.55□□□□□ -0.88
USP1-201ENST00000339950 RPL7P18124 248 aaKnown RBP9.55□□□□□ -0.88
USP1-201ENST00000339950 Q1RN00 199 aa9.55□□□□□ -0.88
USP1-201ENST00000339950 OCIAD2Q56VL3 154 aa9.55□□□□□ -0.88
USP1-201ENST00000339950 TMEM167AQ8TBQ9 72 aa9.55□□□□□ -0.88
USP1-201ENST00000339950 S100A4P26447 101 aaKnown RBP9.55□□□□□ -0.88
USP1-201ENST00000339950 C8orf49Q96NF6 230 aa9.55□□□□□ -0.88
USP1-201ENST00000339950 SVEP1Q4LDE5 3571 aa9.54□□□□□ -0.88
USP1-201ENST00000339950 SRSF9Q13242 221 aaKnown RBP eCLIP9.54□□□□□ -0.88
USP1-201ENST00000339950 STXBP6Q8NFX7 210 aa9.54□□□□□ -0.88
USP1-201ENST00000339950 LOC105371242A0A075B767 164 aa9.54□□□□□ -0.88
USP1-201ENST00000339950 TMEM97Q5BJF2 176 aa9.54□□□□□ -0.88
USP1-201ENST00000339950 A1L4Q6 167 aa9.54□□□□□ -0.88
USP1-201ENST00000339950 TMPRSS3P57727 454 aa9.54□□□□□ -0.88
USP1-201ENST00000339950 RIGQ13278 110 aa9.54□□□□□ -0.88
USP1-201ENST00000339950 SAMD13Q5VXD3 122 aa9.54□□□□□ -0.88
USP1-201ENST00000339950 CLEC19AQ6UXS0 136 aa9.54□□□□□ -0.88
USP1-201ENST00000339950 LCNL1Q6ZST4 164 aa9.54□□□□□ -0.88
USP1-201ENST00000339950 OR5AN1Q8NGI8 311 aa9.54□□□□□ -0.88
USP1-201ENST00000339950 OR10AG1Q8NH19 301 aa9.54□□□□□ -0.88
USP1-201ENST00000339950 RNF125Q96EQ8 232 aa9.54□□□□□ -0.88
USP1-201ENST00000339950 DPM3Q9P2X0 92 aa9.54□□□□□ -0.88
USP1-201ENST00000339950 LIPFP07098 398 aa9.53□□□□□ -0.88
USP1-201ENST00000339950 MEF2CQ06413 473 aaPredicted RBP9.53□□□□□ -0.88
USP1-201ENST00000339950 AMN1Q8IY45 258 aa9.53□□□□□ -0.88
USP1-201ENST00000339950 RNF182Q8N6D2 247 aa9.53□□□□□ -0.88
USP1-201ENST00000339950 OR2K2Q8NGT1 345 aa9.53□□□□□ -0.88
USP1-201ENST00000339950 FXYD5Q96DB9 178 aa9.53□□□□□ -0.88
USP1-201ENST00000339950 NHP2Q9NX24 153 aaKnown RBP9.53□□□□□ -0.88
USP1-201ENST00000339950 FAM90A9PA6NNJ1 464 aa9.53□□□□□ -0.88
USP1-201ENST00000339950 ORAOV1Q8WV07 137 aa9.53□□□□□ -0.88
USP1-201ENST00000339950 FAM167A-AS1Q96KT0 104 aa9.53□□□□□ -0.88
USP1-201ENST00000339950 KIR2DL5BA0A0G2JN68 375 aa9.53□□□□□ -0.88
USP1-201ENST00000339950 KIR2DL5BA0A0G2JPC4 375 aa9.53□□□□□ -0.88
USP1-201ENST00000339950 ERCC8Q13216 396 aa9.53□□□□□ -0.88
USP1-201ENST00000339950 KHDC1LQ5JSQ8 128 aa9.53□□□□□ -0.88
USP1-201ENST00000339950 GDF5OSQ5U4N7 250 aa9.53□□□□□ -0.88
USP1-201ENST00000339950 EBLN2Q6P2I7 272 aa9.53□□□□□ -0.88
USP1-201ENST00000339950 BRD3OSQ6XYD6 125 aa9.53□□□□□ -0.88
USP1-201ENST00000339950 KIR2DL5AQ8N109 375 aa9.53□□□□□ -0.88
USP1-201ENST00000339950 TMEM160Q9NX00 188 aa9.53□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms