RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 PQLC2Q6ZP29 291 aa16.54■□□□□ 0.24
SDC3-202ENST00000339394 RNF141Q8WVD5 230 aa16.54■□□□□ 0.24
SDC3-202ENST00000339394 FXYD5Q96DB9 178 aa16.54■□□□□ 0.24
SDC3-202ENST00000339394 SORL1Q92673 2214 aa16.54■□□□□ 0.24
SDC3-202ENST00000339394 ALKAL2Q6UX46 152 aa16.53■□□□□ 0.24
SDC3-202ENST00000339394 FAM213BQ8TBF2 198 aa16.53■□□□□ 0.24
SDC3-202ENST00000339394 C16orf92Q96LL3 132 aa16.53■□□□□ 0.24
SDC3-202ENST00000339394 ARL14EPLP0DKL9 152 aa16.52■□□□□ 0.24
SDC3-202ENST00000339394 SULT1A2P50226 295 aa16.52■□□□□ 0.24
SDC3-202ENST00000339394 RAB5CP51148 216 aa16.52■□□□□ 0.24
SDC3-202ENST00000339394 GUK1Q16774 197 aa16.52■□□□□ 0.24
SDC3-202ENST00000339394 ODF3L2Q3SX64 289 aa16.52■□□□□ 0.24
SDC3-202ENST00000339394 FAM74A1Q5RGS3 127 aa16.52■□□□□ 0.24
SDC3-202ENST00000339394 SAMD13Q5VXD3 122 aa16.52■□□□□ 0.24
SDC3-202ENST00000339394 DPPA3Q6W0C5 159 aa16.52■□□□□ 0.24
SDC3-202ENST00000339394 Q8N1Y9 231 aa16.52■□□□□ 0.24
SDC3-202ENST00000339394 LRRC20Q8TCA0 184 aa16.52■□□□□ 0.24
SDC3-202ENST00000339394 SAT2Q96F10 170 aaPredicted RBP16.52■□□□□ 0.24
SDC3-202ENST00000339394 UBQLN2Q9UHD9 624 aa16.52■□□□□ 0.24
SDC3-202ENST00000339394 TRBV19A0A075B6N1 114 aa16.51■□□□□ 0.23
SDC3-202ENST00000339394 ISLRO14498 428 aa16.51■□□□□ 0.23
SDC3-202ENST00000339394 NBEAP1P0C6P0 100 aa16.51■□□□□ 0.23
SDC3-202ENST00000339394 ZNF688P0C7X2 276 aa16.51■□□□□ 0.23
SDC3-202ENST00000339394 SNRPD3P62318 126 aaKnown RBP16.51■□□□□ 0.23
SDC3-202ENST00000339394 UBE2L3P68036 154 aaKnown RBP16.51■□□□□ 0.23
SDC3-202ENST00000339394 LCN15Q6UWW0 184 aa16.51■□□□□ 0.23
SDC3-202ENST00000339394 BLNKQ8WV28 456 aa16.51■□□□□ 0.23
SDC3-202ENST00000339394 C19orf73Q9NVV2 129 aa16.51■□□□□ 0.23
SDC3-202ENST00000339394 AURKAIP1Q9NWT8 199 aaPredicted RBP16.51■□□□□ 0.23
SDC3-202ENST00000339394 TRAV8-2A0A0B4J237 113 aa16.51■□□□□ 0.23
SDC3-202ENST00000339394 SLC17A3O00476 420 aa16.51■□□□□ 0.23
SDC3-202ENST00000339394 ID1P41134 155 aa16.51■□□□□ 0.23
SDC3-202ENST00000339394 IGFL4Q6B9Z1 124 aa16.51■□□□□ 0.23
SDC3-202ENST00000339394 MAP6D1Q9H9H5 199 aa16.51■□□□□ 0.23
SDC3-202ENST00000339394 ZNF331Q9NQX6 463 aaPredicted RBP16.51■□□□□ 0.23
SDC3-202ENST00000339394 CXorf1O96002 111 aa16.5■□□□□ 0.23
SDC3-202ENST00000339394 PSMB3P49720 205 aa16.5■□□□□ 0.23
SDC3-202ENST00000339394 PDE6HQ13956 83 aa16.5■□□□□ 0.23
SDC3-202ENST00000339394 FAM110AQ9BQ89 295 aa16.5■□□□□ 0.23
SDC3-202ENST00000339394 MAP1LC3B2A6NCE7 125 aa16.49■□□□□ 0.23
SDC3-202ENST00000339394 OR11H12B2RN74 326 aa16.49■□□□□ 0.23
SDC3-202ENST00000339394 NDUFB4O95168 129 aa16.49■□□□□ 0.23
SDC3-202ENST00000339394 DEFB131AP59861 70 aa16.49■□□□□ 0.23
SDC3-202ENST00000339394 PSMG4Q5JS54 123 aa16.49■□□□□ 0.23
SDC3-202ENST00000339394 LINC00052Q96N35 136 aa16.49■□□□□ 0.23
SDC3-202ENST00000339394 MAP1LC3BQ9GZQ8 125 aa16.49■□□□□ 0.23
SDC3-202ENST00000339394 WFDC10AQ9H1F0 79 aa16.49■□□□□ 0.23
SDC3-202ENST00000339394 ZNF253O75346 499 aa16.48■□□□□ 0.23
SDC3-202ENST00000339394 GCHFRP30047 84 aa16.48■□□□□ 0.23
SDC3-202ENST00000339394 FGF8P55075 233 aaPredicted RBP16.48■□□□□ 0.23
SDC3-202ENST00000339394 CMC4P56277 68 aaPredicted RBP16.48■□□□□ 0.23
SDC3-202ENST00000339394 APRG1Q8IVJ8 170 aa16.48■□□□□ 0.23
SDC3-202ENST00000339394 SFT2D1Q8WV19 159 aa16.48■□□□□ 0.23
SDC3-202ENST00000339394 MBD3L1Q8WWY6 194 aa16.48■□□□□ 0.23
SDC3-202ENST00000339394 SLC50A1Q9BRV3 221 aa16.48■□□□□ 0.23
SDC3-202ENST00000339394 H2AFB1P0C5Y9 115 aa16.47■□□□□ 0.23
SDC3-202ENST00000339394 RNF182Q8N6D2 247 aa16.47■□□□□ 0.23
SDC3-202ENST00000339394 C20orf173Q96LM9 149 aa16.47■□□□□ 0.23
SDC3-202ENST00000339394 HLA-DMBP28068 263 aa16.47■□□□□ 0.23
SDC3-202ENST00000339394 ZNF124Q15973 351 aa16.47■□□□□ 0.23
SDC3-202ENST00000339394 TEX261Q6UWH6 196 aa16.47■□□□□ 0.23
SDC3-202ENST00000339394 IQCF2Q8IXL9 164 aa16.47■□□□□ 0.23
SDC3-202ENST00000339394 DEFB125Q8N687 156 aa16.47■□□□□ 0.23
SDC3-202ENST00000339394 SUN5Q8TC36 379 aa16.47■□□□□ 0.23
SDC3-202ENST00000339394 TMPRSS5Q9H3S3 457 aa16.47■□□□□ 0.23
SDC3-202ENST00000339394 ZNF705EA8MWA4 302 aaPredicted RBP16.45■□□□□ 0.22
SDC3-202ENST00000339394 K7EIL1 84 aa16.45■□□□□ 0.22
SDC3-202ENST00000339394 RANP62826 216 aaKnown RBP16.45■□□□□ 0.22
SDC3-202ENST00000339394 PSG9Q00887 426 aa16.45■□□□□ 0.22
SDC3-202ENST00000339394 TMEM167BQ9NRX6 74 aa16.45■□□□□ 0.22
SDC3-202ENST00000339394 MEGF8Q7Z7M0 2845 aa16.45■□□□□ 0.22
SDC3-202ENST00000339394 PSG3Q16557 428 aa16.44■□□□□ 0.22
SDC3-202ENST00000339394 EXOC3-AS1Q8N2X6 119 aa16.44■□□□□ 0.22
SDC3-202ENST00000339394 CITED4Q96RK1 184 aa16.44■□□□□ 0.22
SDC3-202ENST00000339394 A0A1B0GV50 99 aa16.43■□□□□ 0.22
SDC3-202ENST00000339394 DEFB1P60022 68 aa16.43■□□□□ 0.22
SDC3-202ENST00000339394 IGHV4-30-4P0DP06 118 aa16.43■□□□□ 0.22
SDC3-202ENST00000339394 DEFA6Q01524 100 aa16.43■□□□□ 0.22
SDC3-202ENST00000339394 LYPD1Q8N2G4 141 aa16.43■□□□□ 0.22
SDC3-202ENST00000339394 ZNF680Q8NEM1 530 aa16.43■□□□□ 0.22
SDC3-202ENST00000339394 AAMDCQ9H7C9 122 aa16.43■□□□□ 0.22
SDC3-202ENST00000339394 CLEC5AQ9NY25 188 aa16.43■□□□□ 0.22
SDC3-202ENST00000339394 ZNF705FA8MVS1 300 aaPredicted RBP16.42■□□□□ 0.22
SDC3-202ENST00000339394 Q9H3A6 140 aa16.42■□□□□ 0.22
SDC3-202ENST00000339394 TRAV1-1A0A0B4J248 108 aa16.41■□□□□ 0.22
SDC3-202ENST00000339394 M0R3E3 92 aa16.41■□□□□ 0.22
SDC3-202ENST00000339394 PRB4P10163 310 aaPredicted RBP16.41■□□□□ 0.22
SDC3-202ENST00000339394 ICAM4Q14773 271 aa16.41■□□□□ 0.22
SDC3-202ENST00000339394 ZNF738Q8NE65 137 aa16.41■□□□□ 0.22
SDC3-202ENST00000339394 SRD5A3Q9H8P0 318 aa16.41■□□□□ 0.22
SDC3-202ENST00000339394 KNCNA6PVL3 124 aa16.4■□□□□ 0.22
SDC3-202ENST00000339394 F6UB75 175 aa16.4■□□□□ 0.22
SDC3-202ENST00000339394 GDF5OSQ5U4N7 250 aa16.4■□□□□ 0.22
SDC3-202ENST00000339394 RPUSD4Q96CM3 377 aaKnown RBP16.4■□□□□ 0.22
SDC3-202ENST00000339394 TUBA4BQ9H853 241 aa16.4■□□□□ 0.22
SDC3-202ENST00000339394 IFNA7P01567 189 aa16.39■□□□□ 0.21
SDC3-202ENST00000339394 CCL20P78556 96 aa16.39■□□□□ 0.21
SDC3-202ENST00000339394 ACTL10Q5JWF8 245 aa16.39■□□□□ 0.21
SDC3-202ENST00000339394 PGPA6NDG6 321 aa16.38■□□□□ 0.21
SDC3-202ENST00000339394 TEX46H3BTG2 121 aa16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms