RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 PAX9P55771 341 aa10.27□□□□□ -0.77
SDC3-201ENST00000336798 NABP1Q96AH0 204 aa10.27□□□□□ -0.77
SDC3-201ENST00000336798 PATJQ8NI35 1801 aa10.26□□□□□ -0.77
SDC3-201ENST00000336798 TRAV25A0A0B4J276 109 aa10.26□□□□□ -0.77
SDC3-201ENST00000336798 NTF4P34130 210 aa10.26□□□□□ -0.77
SDC3-201ENST00000336798 PARP14Q460N5 1801 aa10.26□□□□□ -0.77
SDC3-201ENST00000336798 NXPH4O95158 308 aa10.26□□□□□ -0.77
SDC3-201ENST00000336798 C9orf139Q6ZV77 190 aa10.26□□□□□ -0.77
SDC3-201ENST00000336798 C8orf49Q96NF6 230 aa10.26□□□□□ -0.77
SDC3-201ENST00000336798 SIGLEC9Q9Y336 463 aa10.26□□□□□ -0.77
SDC3-201ENST00000336798 IFITM1P13164 125 aa10.26□□□□□ -0.77
SDC3-201ENST00000336798 LINC00479Q96M42 142 aa10.26□□□□□ -0.77
SDC3-201ENST00000336798 RBBP6Q7Z6E9 1792 aaKnown RBP10.26□□□□□ -0.77
SDC3-201ENST00000336798 ZNF236Q9UL36 1845 aa10.26□□□□□ -0.77
SDC3-201ENST00000336798 THSD7AQ9UPZ6 1657 aa10.26□□□□□ -0.77
SDC3-201ENST00000336798 GAGE7O76087 117 aa10.26□□□□□ -0.77
SDC3-201ENST00000336798 GAGE12FP0CL80 117 aa10.26□□□□□ -0.77
SDC3-201ENST00000336798 GAGE12GP0CL81 117 aa10.26□□□□□ -0.77
SDC3-201ENST00000336798 GAGE12IP0CL82 117 aa10.26□□□□□ -0.77
SDC3-201ENST00000336798 C1QTNF4Q9BXJ3 329 aa10.26□□□□□ -0.77
SDC3-201ENST00000336798 KLF12Q9Y4X4 402 aa10.26□□□□□ -0.77
SDC3-201ENST00000336798 TRAV12-2A0A075B6T6 113 aa10.25□□□□□ -0.77
SDC3-201ENST00000336798 ADCYAP1P18509 176 aa10.25□□□□□ -0.77
SDC3-201ENST00000336798 TRGV9Q99603 122 aa10.25□□□□□ -0.77
SDC3-201ENST00000336798 IGKV1-5P01602 117 aa10.25□□□□□ -0.77
SDC3-201ENST00000336798 FAM90A9PA6NNJ1 464 aa10.25□□□□□ -0.77
SDC3-201ENST00000336798 PMVKQ15126 192 aa10.25□□□□□ -0.77
SDC3-201ENST00000336798 GAGE12HA6NDE8 117 aa10.25□□□□□ -0.77
SDC3-201ENST00000336798 CD5LO43866 347 aa10.25□□□□□ -0.77
SDC3-201ENST00000336798 PRB1P04280 392 aa10.25□□□□□ -0.77
SDC3-201ENST00000336798 CSRP3P50461 194 aa10.25□□□□□ -0.77
SDC3-201ENST00000336798 IGKV1D-17A0A075B6S4 117 aa10.24□□□□□ -0.77
SDC3-201ENST00000336798 MYMXA0A1B0GTQ4 84 aa10.24□□□□□ -0.77
SDC3-201ENST00000336798 FAM223BA6NKX1 122 aa10.24□□□□□ -0.77
SDC3-201ENST00000336798 MST1P26927 711 aa10.24□□□□□ -0.77
SDC3-201ENST00000336798 FAM223AQ8IWN6 122 aa10.24□□□□□ -0.77
SDC3-201ENST00000336798 NKAPP1Q8N9T2 125 aa10.24□□□□□ -0.77
SDC3-201ENST00000336798 DLX4Q92988 240 aaPredicted RBP10.24□□□□□ -0.77
SDC3-201ENST00000336798 IGLV3-32A0A0A0MS00 114 aa10.24□□□□□ -0.77
SDC3-201ENST00000336798 PLXNA1Q9UIW2 1896 aa10.24□□□□□ -0.77
SDC3-201ENST00000336798 C9JAW5 83 aa10.24□□□□□ -0.77
SDC3-201ENST00000336798 GAGE6Q13070 117 aa10.24□□□□□ -0.77
SDC3-201ENST00000336798 SCN4AP35499 1836 aa10.24□□□□□ -0.77
SDC3-201ENST00000336798 IGKV1-16P04430 117 aa10.24□□□□□ -0.77
SDC3-201ENST00000336798 SMPXQ9UHP9 88 aa10.24□□□□□ -0.77
SDC3-201ENST00000336798 CEP290O15078 2479 aa10.24□□□□□ -0.77
SDC3-201ENST00000336798 E7EQL1 145 aa10.24□□□□□ -0.77
SDC3-201ENST00000336798 RBMY1FQ15415 496 aaKnown RBP10.24□□□□□ -0.77
SDC3-201ENST00000336798 USMG5Q96IX5 58 aa10.24□□□□□ -0.77
SDC3-201ENST00000336798 LIME1Q9H400 295 aa10.24□□□□□ -0.77
SDC3-201ENST00000336798 M0R1W7 72 aa10.23□□□□□ -0.77
SDC3-201ENST00000336798 ATP6V0E1O15342 81 aa10.23□□□□□ -0.77
SDC3-201ENST00000336798 ARMS2P0C7Q2 107 aa10.23□□□□□ -0.77
SDC3-201ENST00000336798 HOXD3P31249 432 aaPredicted RBP10.23□□□□□ -0.77
SDC3-201ENST00000336798 DAZ1Q9NQZ3 744 aaKnown RBP10.23□□□□□ -0.77
SDC3-201ENST00000336798 SPANXA1Q9NS26 97 aa10.23□□□□□ -0.77
SDC3-201ENST00000336798 DOCK3Q8IZD9 2030 aa10.23□□□□□ -0.77
SDC3-201ENST00000336798 K7EP13 123 aa10.23□□□□□ -0.77
SDC3-201ENST00000336798 RASL11AQ6T310 242 aa10.23□□□□□ -0.77
SDC3-201ENST00000336798 FER1L5A0AVI2 2057 aa10.23□□□□□ -0.77
SDC3-201ENST00000336798 DOCK4Q8N1I0 1966 aa10.23□□□□□ -0.77
SDC3-201ENST00000336798 SLAQ13239 276 aa10.23□□□□□ -0.77
SDC3-201ENST00000336798 THADAQ6YHU6 1953 aa10.22□□□□□ -0.77
SDC3-201ENST00000336798 TRAV26-2A0A0B4J265 109 aa10.22□□□□□ -0.77
SDC3-201ENST00000336798 G3V318 75 aa10.22□□□□□ -0.77
SDC3-201ENST00000336798 LINC01619G3V211 115 aa10.22□□□□□ -0.77
SDC3-201ENST00000336798 CFHR2P36980 270 aa10.22□□□□□ -0.77
SDC3-201ENST00000336798 TMEM213A2RRL7 107 aa10.22□□□□□ -0.77
SDC3-201ENST00000336798 LINC01551Q86U37 167 aa10.22□□□□□ -0.77
SDC3-201ENST00000336798 STPG4Q8N801 248 aa10.22□□□□□ -0.77
SDC3-201ENST00000336798 NEUROG3Q9Y4Z2 214 aa10.22□□□□□ -0.77
SDC3-201ENST00000336798 PSME4Q14997 1843 aa10.22□□□□□ -0.77
SDC3-201ENST00000336798 RPP25LQ8N5L8 163 aaKnown RBP10.22□□□□□ -0.77
SDC3-201ENST00000336798 THAP8Q8NA92 274 aa10.22□□□□□ -0.77
SDC3-201ENST00000336798 ZC2HC1BQ5TFG8 222 aa10.22□□□□□ -0.77
SDC3-201ENST00000336798 NEGR1Q7Z3B1 354 aa10.22□□□□□ -0.77
SDC3-201ENST00000336798 AKAP6Q13023 2319 aa10.22□□□□□ -0.77
SDC3-201ENST00000336798 MPDZO75970 2070 aa10.21□□□□□ -0.77
SDC3-201ENST00000336798 TRBV24-1A0A075B6N3 115 aa10.21□□□□□ -0.77
SDC3-201ENST00000336798 TRACP01848 142 aa10.21□□□□□ -0.77
SDC3-201ENST00000336798 TP53TG1Q9Y2A0 90 aa10.21□□□□□ -0.77
SDC3-201ENST00000336798 MSMBP08118 114 aa10.21□□□□□ -0.77
SDC3-201ENST00000336798 C3orf79P0CE67 100 aa10.21□□□□□ -0.77
SDC3-201ENST00000336798 RPRMLQ8N4K4 120 aa10.21□□□□□ -0.77
SDC3-201ENST00000336798 LY6G5BQ8NDX9 201 aa10.21□□□□□ -0.77
SDC3-201ENST00000336798 TMEM242Q9NWH2 141 aa10.21□□□□□ -0.77
SDC3-201ENST00000336798 HAPLN4Q86UW8 402 aa10.21□□□□□ -0.78
SDC3-201ENST00000336798 DNAJC30Q96LL9 226 aa10.21□□□□□ -0.78
SDC3-201ENST00000336798 SLC25A16P16260 332 aa10.21□□□□□ -0.78
SDC3-201ENST00000336798 SUPT4H1P63272 117 aaKnown RBP10.21□□□□□ -0.78
SDC3-201ENST00000336798 ASPHD1Q5U4P2 390 aa10.21□□□□□ -0.78
SDC3-201ENST00000336798 TCF15Q12870 199 aa10.2□□□□□ -0.78
SDC3-201ENST00000336798 CDPF1Q6NVV7 123 aa10.2□□□□□ -0.78
SDC3-201ENST00000336798 J3QRE1 110 aa10.2□□□□□ -0.78
SDC3-201ENST00000336798 NDUFS5O43920 106 aa10.2□□□□□ -0.78
SDC3-201ENST00000336798 RNASE13Q5GAN3 156 aaKnown RBP10.2□□□□□ -0.78
SDC3-201ENST00000336798 ADAMTS7Q9UKP4 1686 aa10.2□□□□□ -0.78
SDC3-201ENST00000336798 TRAV12-1A0A0B4J245 112 aa10.2□□□□□ -0.78
SDC3-201ENST00000336798 Q6P435 159 aa10.2□□□□□ -0.78
SDC3-201ENST00000336798 RNASE8Q8TDE3 154 aaKnown RBP10.2□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 112.5 ms