RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 HGFACQ04756 655 aa11.34□□□□□ -0.59
CSPG4-201ENST00000308508 C9orf106Q8NAJ2 232 aa11.34□□□□□ -0.59
CSPG4-201ENST00000308508 MMP23AO75900 390 aa11.34□□□□□ -0.59
CSPG4-201ENST00000308508 IGHG4P01861 327 aa11.34□□□□□ -0.59
CSPG4-201ENST00000308508 COX8AP10176 69 aa11.34□□□□□ -0.59
CSPG4-201ENST00000308508 NTF4P34130 210 aa11.34□□□□□ -0.59
CSPG4-201ENST00000308508 PRR31Q5SQ13 230 aa11.34□□□□□ -0.59
CSPG4-201ENST00000308508 ANKRD29Q8N6D5 301 aa11.34□□□□□ -0.59
CSPG4-201ENST00000308508 IGKV1-5P01602 117 aa11.34□□□□□ -0.59
CSPG4-201ENST00000308508 RBM3P98179 157 aaKnown RBP11.34□□□□□ -0.59
CSPG4-201ENST00000308508 MINOS1Q5TGZ0 78 aa11.34□□□□□ -0.59
CSPG4-201ENST00000308508 USMG5Q96IX5 58 aa11.34□□□□□ -0.59
CSPG4-201ENST00000308508 MINOS1-NBL1R4GNA1 71 aa11.34□□□□□ -0.59
CSPG4-201ENST00000308508 CEND1Q8N111 149 aa11.34□□□□□ -0.59
CSPG4-201ENST00000308508 A0A0G2JMZ2 1700 aa11.33□□□□□ -0.59
CSPG4-201ENST00000308508 LRRC37A2A6NM11 1700 aa11.33□□□□□ -0.59
CSPG4-201ENST00000308508 LRRC37AA6NMS7 1700 aa11.33□□□□□ -0.59
CSPG4-201ENST00000308508 A0A087WV48 116 aa11.33□□□□□ -0.6
CSPG4-201ENST00000308508 OOSP1A8MZH6 123 aa11.33□□□□□ -0.6
CSPG4-201ENST00000308508 IGHV1-3A0A0C4DH29 117 aa11.33□□□□□ -0.6
CSPG4-201ENST00000308508 GAGE12JA6NER3 117 aa11.33□□□□□ -0.6
CSPG4-201ENST00000308508 GAGE7O76087 117 aa11.33□□□□□ -0.6
CSPG4-201ENST00000308508 GAGE12FP0CL80 117 aa11.33□□□□□ -0.6
CSPG4-201ENST00000308508 GAGE12GP0CL81 117 aa11.33□□□□□ -0.6
CSPG4-201ENST00000308508 GAGE12IP0CL82 117 aa11.33□□□□□ -0.6
CSPG4-201ENST00000308508 GAGE4Q13068 117 aa11.33□□□□□ -0.6
CSPG4-201ENST00000308508 C18orf32Q8TCD1 76 aa11.33□□□□□ -0.6
CSPG4-201ENST00000308508 FAM223BA6NKX1 122 aa11.33□□□□□ -0.6
CSPG4-201ENST00000308508 TGFBR3LH3BV60 316 aa11.33□□□□□ -0.6
CSPG4-201ENST00000308508 FAM223AQ8IWN6 122 aa11.33□□□□□ -0.6
CSPG4-201ENST00000308508 PRO1854Q9UHT4 67 aa11.33□□□□□ -0.6
CSPG4-201ENST00000308508 TP53TG1Q9Y2A0 90 aa11.33□□□□□ -0.6
CSPG4-201ENST00000308508 MORN5Q5VZ52 161 aa11.33□□□□□ -0.6
CSPG4-201ENST00000308508 A0A087WWL8 130 aa11.33□□□□□ -0.6
CSPG4-201ENST00000308508 ADCYAP1P18509 176 aa11.33□□□□□ -0.6
CSPG4-201ENST00000308508 BOD1L2Q8IYS8 172 aa11.33□□□□□ -0.6
CSPG4-201ENST00000308508 SRRM5B3KS81 715 aa11.32□□□□□ -0.6
CSPG4-201ENST00000308508 IGHV1-8P0DP01 117 aa11.32□□□□□ -0.6
CSPG4-201ENST00000308508 FOXF2Q12947 444 aa11.32□□□□□ -0.6
CSPG4-201ENST00000308508 SAP30O75446 220 aa11.32□□□□□ -0.6
CSPG4-201ENST00000308508 SRSF8Q9BRL6 282 aaKnown RBP11.32□□□□□ -0.6
CSPG4-201ENST00000308508 PRB4P10163 310 aaPredicted RBP11.32□□□□□ -0.6
CSPG4-201ENST00000308508 HLA-DMBP28068 263 aa11.32□□□□□ -0.6
CSPG4-201ENST00000308508 HAPLN4Q86UW8 402 aa11.32□□□□□ -0.6
CSPG4-201ENST00000308508 ZNF407Q9C0G0 2248 aa11.32□□□□□ -0.6
CSPG4-201ENST00000308508 PRSS46E5RG02 174 aa11.32□□□□□ -0.6
CSPG4-201ENST00000308508 NDUFC2O95298 119 aa11.32□□□□□ -0.6
CSPG4-201ENST00000308508 ZNF492Q9P255 531 aa11.32□□□□□ -0.6
CSPG4-201ENST00000308508 COL5A3P25940 1745 aaPredicted RBP11.32□□□□□ -0.6
CSPG4-201ENST00000308508 IGHV1-18A0A0C4DH31 117 aa11.32□□□□□ -0.6
CSPG4-201ENST00000308508 IGLC2P0DOY2 106 aa11.32□□□□□ -0.6
CSPG4-201ENST00000308508 IGLC3P0DOY3 106 aa11.32□□□□□ -0.6
CSPG4-201ENST00000308508 TMEM200BQ69YZ2 307 aa11.32□□□□□ -0.6
CSPG4-201ENST00000308508 TRBV6-6A0A0A6YYG2 114 aa11.31□□□□□ -0.6
CSPG4-201ENST00000308508 TFF1P04155 84 aa11.31□□□□□ -0.6
CSPG4-201ENST00000308508 TNRC6AQ8NDV7 1962 aaKnown RBP11.31□□□□□ -0.6
CSPG4-201ENST00000308508 WDR81Q562E7 1941 aa11.31□□□□□ -0.6
CSPG4-201ENST00000308508 TRAV13-2A0A0B4J235 113 aa11.31□□□□□ -0.6
CSPG4-201ENST00000308508 H0YJW9 148 aa11.31□□□□□ -0.6
CSPG4-201ENST00000308508 CRYGSP22914 178 aa11.31□□□□□ -0.6
CSPG4-201ENST00000308508 SLC25A16P16260 332 aa11.31□□□□□ -0.6
CSPG4-201ENST00000308508 GAGE5Q13069 117 aa11.31□□□□□ -0.6
CSPG4-201ENST00000308508 GAGE6Q13070 117 aa11.31□□□□□ -0.6
CSPG4-201ENST00000308508 Q8N8P6 123 aa11.31□□□□□ -0.6
CSPG4-201ENST00000308508 I3L3M4 83 aa11.31□□□□□ -0.6
CSPG4-201ENST00000308508 IGKV1-12A0A0C4DH73 117 aa11.31□□□□□ -0.6
CSPG4-201ENST00000308508 IGKV1D-12P01611 117 aa11.31□□□□□ -0.6
CSPG4-201ENST00000308508 ARMS2P0C7Q2 107 aa11.31□□□□□ -0.6
CSPG4-201ENST00000308508 TAL2Q16559 108 aa11.31□□□□□ -0.6
CSPG4-201ENST00000308508 C10orf55Q5SWW7 151 aa11.31□□□□□ -0.6
CSPG4-201ENST00000308508 KLHDC3Q9BQ90 382 aa11.31□□□□□ -0.6
CSPG4-201ENST00000308508 IGHV3-53P01767 116 aa11.31□□□□□ -0.6
CSPG4-201ENST00000308508 VMO1Q7Z5L0 202 aa11.31□□□□□ -0.6
CSPG4-201ENST00000308508 IGHV1-46P01743 117 aa11.3□□□□□ -0.6
CSPG4-201ENST00000308508 NDPQ00604 133 aa11.3□□□□□ -0.6
CSPG4-201ENST00000308508 PCNX2A6NKB5 2137 aa11.3□□□□□ -0.6
CSPG4-201ENST00000308508 TET1Q8NFU7 2136 aa11.3□□□□□ -0.6
CSPG4-201ENST00000308508 ZGRF1Q86YA3 2104 aa11.3□□□□□ -0.6
CSPG4-201ENST00000308508 A0A1W2PR77 199 aa11.3□□□□□ -0.6
CSPG4-201ENST00000308508 C15orf62A8K5M9 175 aa11.3□□□□□ -0.6
CSPG4-201ENST00000308508 LTBRP36941 435 aa11.3□□□□□ -0.6
CSPG4-201ENST00000308508 NKAPP1Q8N9T2 125 aa11.3□□□□□ -0.6
CSPG4-201ENST00000308508 NCKAP5O14513 1909 aa11.3□□□□□ -0.6
CSPG4-201ENST00000308508 C5orf64Q2M2E5 130 aa11.3□□□□□ -0.6
CSPG4-201ENST00000308508 IL17RELQ6ZVW7 336 aa11.3□□□□□ -0.6
CSPG4-201ENST00000308508 SHANK1Q9Y566 2161 aa11.29□□□□□ -0.6
CSPG4-201ENST00000308508 SPTAN1Q13813 2472 aaKnown RBP11.29□□□□□ -0.6
CSPG4-201ENST00000308508 TRAV3A0A0B4J244 114 aa11.29□□□□□ -0.6
CSPG4-201ENST00000308508 ZNF561-AS1K7EIQ3 104 aa11.29□□□□□ -0.6
CSPG4-201ENST00000308508 LGALS9BQ3B8N2 356 aa11.29□□□□□ -0.6
CSPG4-201ENST00000308508 NSUN5P1Q3KNT7 163 aa11.29□□□□□ -0.6
CSPG4-201ENST00000308508 LGALS9CQ6DKI2 356 aa11.29□□□□□ -0.6
CSPG4-201ENST00000308508 RHODO00212 210 aa11.29□□□□□ -0.6
CSPG4-201ENST00000308508 LYPD3O95274 346 aa11.29□□□□□ -0.6
CSPG4-201ENST00000308508 ZNF883P0CG24 379 aa11.29□□□□□ -0.6
CSPG4-201ENST00000308508 CEACAM8P31997 349 aaPredicted RBP11.29□□□□□ -0.6
CSPG4-201ENST00000308508 CFHR2P36980 270 aa11.29□□□□□ -0.6
CSPG4-201ENST00000308508 CARD19Q96LW7 228 aa11.29□□□□□ -0.6
CSPG4-201ENST00000308508 FAM104BQ5XKR9 115 aa11.29□□□□□ -0.6
CSPG4-201ENST00000308508 LOC102723996A0A087X1L8 192 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms