RNA–Protein interactions for RNA: ENST00000300933.8

TPM4-201, Transcript of tropomyosin 4, humanhuman

TSL 1 (best) BASIC

Gene TPM4, Length 2,666 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4-201ENST00000300933 C5orf64Q2M2E5 130 aa17.3■□□□□ 0.36
TPM4-201ENST00000300933 ZNF329Q86UD4 541 aa17.3■□□□□ 0.36
TPM4-201ENST00000300933 OR2D3Q8NGH3 330 aa17.3■□□□□ 0.36
TPM4-201ENST00000300933 ABCA2Q9BZC7 2435 aa17.29■□□□□ 0.36
TPM4-201ENST00000300933 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP17.29■□□□□ 0.361e-6■■■□□ 16.8
TPM4-201ENST00000300933 FOXA3P55318 350 aaPredicted RBP17.29■□□□□ 0.36
TPM4-201ENST00000300933 NUDT10Q8NFP7 164 aa17.29■□□□□ 0.36
TPM4-201ENST00000300933 NUDT11Q96G61 164 aa17.29■□□□□ 0.36
TPM4-201ENST00000300933 OR4C46A6NHA9 309 aa17.29■□□□□ 0.36
TPM4-201ENST00000300933 K7EIM0 57 aa17.29■□□□□ 0.36
TPM4-201ENST00000300933 LINC00173Q6ZV60 143 aa17.29■□□□□ 0.36
TPM4-201ENST00000300933 BCL6BQ8N143 479 aaPredicted RBP17.29■□□□□ 0.36
TPM4-201ENST00000300933 VPS25Q9BRG1 176 aa17.29■□□□□ 0.36
TPM4-201ENST00000300933 ZNF462Q96JM2 2506 aa17.29■□□□□ 0.36
TPM4-201ENST00000300933 HIGD1CA8MV81 97 aa17.28■□□□□ 0.36
TPM4-201ENST00000300933 IGKV1-17P01599 117 aa17.28■□□□□ 0.36
TPM4-201ENST00000300933 PERPQ96FX8 193 aa17.28■□□□□ 0.36
TPM4-201ENST00000300933 MCRIP2Q9BUT9 160 aaKnown RBP17.28■□□□□ 0.36
TPM4-201ENST00000300933 PGPA6NDG6 321 aa17.28■□□□□ 0.36
TPM4-201ENST00000300933 NUDT3O95989 172 aa17.28■□□□□ 0.36
TPM4-201ENST00000300933 RNF5Q99942 180 aa17.28■□□□□ 0.36
TPM4-201ENST00000300933 RASL11BQ9BPW5 248 aa17.28■□□□□ 0.36
TPM4-201ENST00000300933 TMEM70Q9BUB7 260 aa17.28■□□□□ 0.36
TPM4-201ENST00000300933 OR2T8A6NH00 312 aa17.27■□□□□ 0.36
TPM4-201ENST00000300933 LRRK2Q5S007 2527 aa17.27■□□□□ 0.35
TPM4-201ENST00000300933 H0Y8G0 127 aa17.27■□□□□ 0.35
TPM4-201ENST00000300933 LMO4P61968 165 aa17.27■□□□□ 0.35
TPM4-201ENST00000300933 SIRPDQ9H106 197 aa17.27■□□□□ 0.35
TPM4-201ENST00000300933 TRAV30A0A087WSZ9 112 aa17.26■□□□□ 0.35
TPM4-201ENST00000300933 LOC102724200A0A096LPH7 203 aaPredicted RBP17.26■□□□□ 0.35
TPM4-201ENST00000300933 VWC2LB2RUY7 222 aa17.26■□□□□ 0.35
TPM4-201ENST00000300933 NBEAP1P0C6P0 100 aa17.26■□□□□ 0.35
TPM4-201ENST00000300933 PAX2Q02962 417 aa17.26■□□□□ 0.35
TPM4-201ENST00000300933 URB1-AS1Q96HZ7 61 aa17.26■□□□□ 0.35
TPM4-201ENST00000300933 SLC25A5P05141 298 aaKnown RBP17.26■□□□□ 0.35
TPM4-201ENST00000300933 NPBQ8NG41 125 aa17.26■□□□□ 0.35
TPM4-201ENST00000300933 WIPF2Q8TF74 440 aaPredicted RBP17.26■□□□□ 0.35
TPM4-201ENST00000300933 NDUFA3O95167 84 aa17.25■□□□□ 0.35
TPM4-201ENST00000300933 IGHV4-39P01824 125 aa17.25■□□□□ 0.35
TPM4-201ENST00000300933 MBD6Q96DN6 1003 aa17.25■□□□□ 0.35
TPM4-201ENST00000300933 USP9YO00507 2555 aaPredicted RBP17.25■□□□□ 0.35
TPM4-201ENST00000300933 PEX7O00628 323 aa17.25■□□□□ 0.35
TPM4-201ENST00000300933 TMEM11P17152 192 aa17.25■□□□□ 0.35
TPM4-201ENST00000300933 S100A7P31151 101 aa17.25■□□□□ 0.35
TPM4-201ENST00000300933 TIMM8BQ9Y5J9 83 aaPredicted RBP17.25■□□□□ 0.35
TPM4-201ENST00000300933 MUC21A0A0G2JKD1 596 aa17.24■□□□□ 0.35
TPM4-201ENST00000300933 MUC21A0A140T8X8 626 aa17.24■□□□□ 0.35
TPM4-201ENST00000300933 TAX1BP3O14907 124 aa17.24■□□□□ 0.35
TPM4-201ENST00000300933 KLF5Q13887 457 aaPredicted RBP17.24■□□□□ 0.35
TPM4-201ENST00000300933 MUC21Q5SSG8 566 aa17.24■□□□□ 0.35
TPM4-201ENST00000300933 TCF24Q7RTU0 167 aa17.24■□□□□ 0.35
TPM4-201ENST00000300933 GRAMD2BQ96HH9 432 aa17.24■□□□□ 0.35
TPM4-201ENST00000300933 IGHV3OR16-8A0A075B7F1 116 aa17.24■□□□□ 0.35
TPM4-201ENST00000300933 IGHV3-35A0A0C4DH35 117 aa17.24■□□□□ 0.35
TPM4-201ENST00000300933 C17orf77Q96MU5 243 aa17.24■□□□□ 0.35
TPM4-201ENST00000300933 ASCL2Q99929 193 aa17.24■□□□□ 0.35
TPM4-201ENST00000300933 HIGD1AQ9Y241 93 aa17.24■□□□□ 0.35
TPM4-201ENST00000300933 CSPG4Q6UVK1 2322 aa17.24■□□□□ 0.35
TPM4-201ENST00000300933 PRB1P04280 392 aa17.24■□□□□ 0.35
TPM4-201ENST00000300933 SAA4P35542 130 aa17.24■□□□□ 0.35
TPM4-201ENST00000300933 CST9LQ9H4G1 147 aa17.24■□□□□ 0.35
TPM4-201ENST00000300933 EPG5Q9HCE0 2579 aa17.23■□□□□ 0.35
TPM4-201ENST00000300933 AMMECR1LQ6DCA0 310 aa17.23■□□□□ 0.35
TPM4-201ENST00000300933 Q71RC1 249 aaPredicted RBP17.23■□□□□ 0.35
TPM4-201ENST00000300933 ARPC1AQ92747 370 aa17.23■□□□□ 0.35
TPM4-201ENST00000300933 FANCD2OSQ96PS1 177 aa17.23■□□□□ 0.35
TPM4-201ENST00000300933 SLC25A39Q9BZJ4 359 aaPredicted RBP17.23■□□□□ 0.35
TPM4-201ENST00000300933 GP9P14770 177 aa17.23■□□□□ 0.35
TPM4-201ENST00000300933 RASL11AQ6T310 242 aa17.23■□□□□ 0.35
TPM4-201ENST00000300933 EXOC3-AS1Q8N2X6 119 aa17.23■□□□□ 0.35
TPM4-201ENST00000300933 ZC2HC1AQ96GY0 325 aa17.23■□□□□ 0.35
TPM4-201ENST00000300933 C1orf122Q6ZSJ8 110 aa17.22■□□□□ 0.35
TPM4-201ENST00000300933 BVES-AS1Q5T3Y7 98 aa17.22■□□□□ 0.35
TPM4-201ENST00000300933 ZNF562Q6V9R5 426 aa17.22■□□□□ 0.35
TPM4-201ENST00000300933 PIP4P2Q8N4L2 257 aa17.22■□□□□ 0.35
TPM4-201ENST00000300933 AJUBAQ96IF1 538 aa17.22■□□□□ 0.35
TPM4-201ENST00000300933 TRAV8-1A0A0A6YYK1 113 aa17.21■□□□□ 0.35
TPM4-201ENST00000300933 OR2J3O76001 311 aa17.21■□□□□ 0.35
TPM4-201ENST00000300933 IL4P05112 153 aa17.21■□□□□ 0.35
TPM4-201ENST00000300933 CCDC144NLQ6NUI1 221 aa17.21■□□□□ 0.35
TPM4-201ENST00000300933 EPDR1Q9UM22 224 aa17.21■□□□□ 0.35
TPM4-201ENST00000300933 OCIAD2Q56VL3 154 aa17.21■□□□□ 0.35
TPM4-201ENST00000300933 NRGNQ92686 78 aa17.21■□□□□ 0.35
TPM4-201ENST00000300933 PMCHL2Q9BQD1 86 aa17.21■□□□□ 0.35
TPM4-201ENST00000300933 ZANQ9Y493 2812 aa17.2■□□□□ 0.34
TPM4-201ENST00000300933 IGHV1-24A0A0C4DH33 117 aa17.2■□□□□ 0.34
TPM4-201ENST00000300933 SYS1-DBNDD2H3BUS1 97 aa17.2■□□□□ 0.34
TPM4-201ENST00000300933 MYCNOSP40205 109 aa17.2■□□□□ 0.34
TPM4-201ENST00000300933 ZNF138P52744 262 aa17.2■□□□□ 0.34
TPM4-201ENST00000300933 Q9H3A6 140 aa17.2■□□□□ 0.34
TPM4-201ENST00000300933 LINC01548A6NM66 108 aa17.2■□□□□ 0.34
TPM4-201ENST00000300933 LEPROTL1O95214 131 aa17.19■□□□□ 0.34
TPM4-201ENST00000300933 SLC25A34Q6PIV7 304 aa17.19■□□□□ 0.34
TPM4-201ENST00000300933 FAM231DQ6ZW35 169 aa17.19■□□□□ 0.34
TPM4-201ENST00000300933 ST20Q9HBF5 79 aa17.19■□□□□ 0.34
TPM4-201ENST00000300933 SELENOKQ9Y6D0 94 aa17.19■□□□□ 0.34
TPM4-201ENST00000300933 OVOL3O00110 214 aa17.19■□□□□ 0.34
TPM4-201ENST00000300933 GNG7O60262 68 aa17.19■□□□□ 0.34
TPM4-201ENST00000300933 HIST1H1EP10412 219 aaKnown RBP17.19■□□□□ 0.34
TPM4-201ENST00000300933 RHOGP84095 191 aa17.19■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms