RNA–Protein interactions for RNA: ENST00000297979.9

C9orf3-202, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 1 (best) BASIC

Gene C9orf3, Length 2,820 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-202ENST00000297979 LINC01551Q86U37 167 aa11.12□□□□□ -0.63
C9orf3-202ENST00000297979 FAM24BQ8N5W8 94 aa11.12□□□□□ -0.63
C9orf3-202ENST00000297979 SHANK2-AS3Q9BTD1 123 aa11.12□□□□□ -0.63
C9orf3-202ENST00000297979 CTDSP1Q9GZU7 261 aa11.12□□□□□ -0.63
C9orf3-202ENST00000297979 CELSR1Q9NYQ6 3014 aa11.12□□□□□ -0.63
C9orf3-202ENST00000297979 CSMD1Q96PZ7 3565 aa11.12□□□□□ -0.63
C9orf3-202ENST00000297979 MT-ND4LP03901 98 aa11.12□□□□□ -0.63
C9orf3-202ENST00000297979 CTSGP08311 255 aa11.12□□□□□ -0.63
C9orf3-202ENST00000297979 CRYBB3P26998 211 aa11.12□□□□□ -0.63
C9orf3-202ENST00000297979 TRBV20OR9-2A0A075B6H5 130 aa11.11□□□□□ -0.63
C9orf3-202ENST00000297979 H3BRN7 92 aa11.11□□□□□ -0.63
C9orf3-202ENST00000297979 YPEL4Q96NS1 127 aa11.11□□□□□ -0.63
C9orf3-202ENST00000297979 TMEM14CQ9P0S9 112 aa11.11□□□□□ -0.63
C9orf3-202ENST00000297979 LINC00527Q9UJ94 153 aa11.11□□□□□ -0.63
C9orf3-202ENST00000297979 CLDN34H7C241 214 aa11.11□□□□□ -0.63
C9orf3-202ENST00000297979 IGHV4-59P01825 116 aa11.11□□□□□ -0.63
C9orf3-202ENST00000297979 ZNF343Q6P1L6 599 aa11.11□□□□□ -0.63
C9orf3-202ENST00000297979 BLNKQ8WV28 456 aa11.11□□□□□ -0.63
C9orf3-202ENST00000297979 MS4A10Q96PG2 267 aa11.11□□□□□ -0.63
C9orf3-202ENST00000297979 PRRC2AP48634 2157 aaKnown RBP11.11□□□□□ -0.63
C9orf3-202ENST00000297979 MAP1AP78559 2803 aaPredicted RBP11.1□□□□□ -0.63
C9orf3-202ENST00000297979 LOC102724200A0A096LPH7 203 aaPredicted RBP11.1□□□□□ -0.63
C9orf3-202ENST00000297979 C9orf139Q6ZV77 190 aa11.1□□□□□ -0.63
C9orf3-202ENST00000297979 EEF1AKMT3Q96AZ1 226 aa11.1□□□□□ -0.63
C9orf3-202ENST00000297979 APCP25054 2843 aa11.1□□□□□ -0.63
C9orf3-202ENST00000297979 C9JCJ5 164 aa11.1□□□□□ -0.63
C9orf3-202ENST00000297979 GPR183P32249 361 aa11.1□□□□□ -0.63
C9orf3-202ENST00000297979 BLCAPP62952 87 aa11.1□□□□□ -0.63
C9orf3-202ENST00000297979 ZNF329Q86UD4 541 aa11.1□□□□□ -0.63
C9orf3-202ENST00000297979 CHRDL1Q9BU40 450 aa11.1□□□□□ -0.63
C9orf3-202ENST00000297979 ADMP35318 185 aa11.09□□□□□ -0.63
C9orf3-202ENST00000297979 IER3P46695 156 aa11.09□□□□□ -0.63
C9orf3-202ENST00000297979 ERASQ7Z444 233 aa11.09□□□□□ -0.63
C9orf3-202ENST00000297979 WFDC11Q8NEX6 87 aa11.09□□□□□ -0.63
C9orf3-202ENST00000297979 CCDC140Q96MF4 163 aa11.09□□□□□ -0.63
C9orf3-202ENST00000297979 TRBV7-1A0A0A6YYK4 115 aa11.09□□□□□ -0.63
C9orf3-202ENST00000297979 FAM223BA6NKX1 122 aa11.09□□□□□ -0.63
C9orf3-202ENST00000297979 RANP62826 216 aaKnown RBP11.09□□□□□ -0.63
C9orf3-202ENST00000297979 FAM223AQ8IWN6 122 aa11.09□□□□□ -0.63
C9orf3-202ENST00000297979 AURKAIP1Q9NWT8 199 aaPredicted RBP11.09□□□□□ -0.63
C9orf3-202ENST00000297979 TSSC4Q9Y5U2 329 aaPredicted RBP11.09□□□□□ -0.63
C9orf3-202ENST00000297979 MYCNOSP40205 109 aa11.08□□□□□ -0.63
C9orf3-202ENST00000297979 ATP5G2Q06055 141 aa11.08□□□□□ -0.63
C9orf3-202ENST00000297979 ELOBQ15370 118 aa11.08□□□□□ -0.63
C9orf3-202ENST00000297979 PSG3Q16557 428 aa11.08□□□□□ -0.63
C9orf3-202ENST00000297979 BPIFA4PQ86YQ2 179 aa11.08□□□□□ -0.63
C9orf3-202ENST00000297979 LY96Q9Y6Y9 160 aa11.08□□□□□ -0.63
C9orf3-202ENST00000297979 HIST1H1EP10412 219 aaKnown RBP11.08□□□□□ -0.64
C9orf3-202ENST00000297979 RAB5AP20339 215 aa11.08□□□□□ -0.64
C9orf3-202ENST00000297979 SS18L2Q9UHA2 77 aa11.08□□□□□ -0.64
C9orf3-202ENST00000297979 H7BYZ3 331 aa11.08□□□□□ -0.64
C9orf3-202ENST00000297979 TRGV3P03979 118 aa11.08□□□□□ -0.64
C9orf3-202ENST00000297979 COX19Q49B96 90 aa11.08□□□□□ -0.64
C9orf3-202ENST00000297979 CLEC19AQ6UXS0 136 aa11.08□□□□□ -0.64
C9orf3-202ENST00000297979 OCC1Q8TAD7 63 aa11.08□□□□□ -0.64
C9orf3-202ENST00000297979 H3BUA1 57 aa11.07□□□□□ -0.64
C9orf3-202ENST00000297979 PEX7O00628 323 aa11.07□□□□□ -0.64
C9orf3-202ENST00000297979 CD99P14209 185 aa11.07□□□□□ -0.64
C9orf3-202ENST00000297979 GNG4P50150 75 aa11.07□□□□□ -0.64
C9orf3-202ENST00000297979 CENPWQ5EE01 88 aa11.07□□□□□ -0.64
C9orf3-202ENST00000297979 Q6ZS46 218 aa11.07□□□□□ -0.64
C9orf3-202ENST00000297979 ZNF586Q9NXT0 402 aa11.07□□□□□ -0.64
C9orf3-202ENST00000297979 PPIFP30405 207 aaKnown RBP11.07□□□□□ -0.64
C9orf3-202ENST00000297979 UBE2V1Q13404 147 aa11.07□□□□□ -0.64
C9orf3-202ENST00000297979 OR4F17Q8NGA8 305 aa11.07□□□□□ -0.64
C9orf3-202ENST00000297979 CST9LQ9H4G1 147 aa11.07□□□□□ -0.64
C9orf3-202ENST00000297979 CSPG4Q6UVK1 2322 aa11.06□□□□□ -0.64
C9orf3-202ENST00000297979 PGPA6NDG6 321 aa11.06□□□□□ -0.64
C9orf3-202ENST00000297979 H3BTX0 84 aa11.06□□□□□ -0.64
C9orf3-202ENST00000297979 BMPR1BO00238 502 aa11.06□□□□□ -0.64
C9orf3-202ENST00000297979 Q6YL49 198 aa11.06□□□□□ -0.64
C9orf3-202ENST00000297979 Q9H3A6 140 aa11.06□□□□□ -0.64
C9orf3-202ENST00000297979 GNB4Q9HAV0 340 aa11.06□□□□□ -0.64
C9orf3-202ENST00000297979 RABAC1Q9UI14 185 aa11.06□□□□□ -0.64
C9orf3-202ENST00000297979 SLC25A5P05141 298 aaKnown RBP11.06□□□□□ -0.64
C9orf3-202ENST00000297979 CNN1P51911 297 aaKnown RBP11.06□□□□□ -0.64
C9orf3-202ENST00000297979 TPPP2P59282 170 aa11.06□□□□□ -0.64
C9orf3-202ENST00000297979 CIARTQ8N365 385 aaPredicted RBP11.06□□□□□ -0.64
C9orf3-202ENST00000297979 SFRP2Q96HF1 295 aa11.06□□□□□ -0.64
C9orf3-202ENST00000297979 ASCL2Q99929 193 aa11.06□□□□□ -0.64
C9orf3-202ENST00000297979 VPREB3Q9UKI3 123 aa11.06□□□□□ -0.64
C9orf3-202ENST00000297979 SCGB1D1O95968 90 aa11.05□□□□□ -0.64
C9orf3-202ENST00000297979 CXCL1P09341 107 aa11.05□□□□□ -0.64
C9orf3-202ENST00000297979 IGLC2P0DOY2 106 aa11.05□□□□□ -0.64
C9orf3-202ENST00000297979 SCGB1A1P11684 91 aa11.05□□□□□ -0.64
C9orf3-202ENST00000297979 MRPL52Q86TS9 123 aaKnown RBP11.05□□□□□ -0.64
C9orf3-202ENST00000297979 ZNF414Q96IQ9 312 aa11.05□□□□□ -0.64
C9orf3-202ENST00000297979 OR5B12Q96R08 314 aa11.05□□□□□ -0.64
C9orf3-202ENST00000297979 ZNF580Q9UK33 172 aa11.05□□□□□ -0.64
C9orf3-202ENST00000297979 CDC42EP3Q9UKI2 254 aa11.05□□□□□ -0.64
C9orf3-202ENST00000297979 EPDR1Q9UM22 224 aa11.05□□□□□ -0.64
C9orf3-202ENST00000297979 TGIF2-C20orf24A0A0A6YYL0 155 aa11.05□□□□□ -0.64
C9orf3-202ENST00000297979 IGHV3-35A0A0C4DH35 117 aa11.05□□□□□ -0.64
C9orf3-202ENST00000297979 K7EN84 100 aa11.05□□□□□ -0.64
C9orf3-202ENST00000297979 PPP1R2P9O14990 202 aa11.05□□□□□ -0.64
C9orf3-202ENST00000297979 MRPS12O15235 138 aaKnown RBP11.05□□□□□ -0.64
C9orf3-202ENST00000297979 WIPF1O43516 503 aa11.05□□□□□ -0.64
C9orf3-202ENST00000297979 GNG5P63218 68 aa11.05□□□□□ -0.64
C9orf3-202ENST00000297979 ZFHX3Q15911 3703 aa11.05□□□□□ -0.64
C9orf3-202ENST00000297979 TOMM20LQ6UXN7 152 aa11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms