RNA–Protein interactions for RNA: ENST00000292476.9

CPSF4-201, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CPSF4, Length 1,691 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-201ENST00000292476 GNB4Q9HAV0 340 aa13.17□□□□□ -0.3
CPSF4-201ENST00000292476 YAE1D1Q9NRH1 226 aa13.17□□□□□ -0.3
CPSF4-201ENST00000292476 ZNF492Q9P255 531 aa13.17□□□□□ -0.3
CPSF4-201ENST00000292476 HIGD1AQ9Y241 93 aa13.17□□□□□ -0.3
CPSF4-201ENST00000292476 HIVEP2P31629 2446 aa13.16□□□□□ -0.3
CPSF4-201ENST00000292476 SETD2Q9BYW2 2564 aaPredicted RBP13.16□□□□□ -0.3
CPSF4-201ENST00000292476 INAFM1C9JVW0 142 aa13.16□□□□□ -0.3
CPSF4-201ENST00000292476 H3BUX3 64 aa13.16□□□□□ -0.3
CPSF4-201ENST00000292476 TOMM40O96008 361 aa13.16□□□□□ -0.3
CPSF4-201ENST00000292476 FSHBP01225 129 aa13.16□□□□□ -0.3
CPSF4-201ENST00000292476 IGHV3-48P01763 117 aa13.16□□□□□ -0.3
CPSF4-201ENST00000292476 APELAP0DMC3 54 aa13.16□□□□□ -0.3
CPSF4-201ENST00000292476 TEX43Q6ZNM6 134 aa13.16□□□□□ -0.3
CPSF4-201ENST00000292476 Q6ZWC4 215 aa13.16□□□□□ -0.3
CPSF4-201ENST00000292476 MRPL52Q86TS9 123 aaKnown RBP13.16□□□□□ -0.3
CPSF4-201ENST00000292476 TSKUQ8WUA8 353 aa13.16□□□□□ -0.3
CPSF4-201ENST00000292476 KCNS1Q96KK3 526 aa13.16□□□□□ -0.3
CPSF4-201ENST00000292476 RNF24Q9Y225 148 aa13.16□□□□□ -0.3
CPSF4-201ENST00000292476 FN1P02751 2386 aaKnown RBP13.15□□□□□ -0.3
CPSF4-201ENST00000292476 A6NDX4 124 aa13.15□□□□□ -0.3
CPSF4-201ENST00000292476 I3L2K1 104 aa13.15□□□□□ -0.3
CPSF4-201ENST00000292476 BMPR1BO00238 502 aa13.15□□□□□ -0.3
CPSF4-201ENST00000292476 APCSP02743 223 aa13.15□□□□□ -0.3
CPSF4-201ENST00000292476 FRMD6-AS1P0C7T7 363 aa13.15□□□□□ -0.3
CPSF4-201ENST00000292476 IGLC1P0CG04 106 aa13.15□□□□□ -0.3
CPSF4-201ENST00000292476 NUDT10Q8NFP7 164 aa13.15□□□□□ -0.3
CPSF4-201ENST00000292476 NUDT11Q96G61 164 aa13.15□□□□□ -0.3
CPSF4-201ENST00000292476 LINC00479Q96M42 142 aa13.15□□□□□ -0.3
CPSF4-201ENST00000292476 FAM103A1Q9BTL3 118 aaKnown RBP13.15□□□□□ -0.3
CPSF4-201ENST00000292476 MLST8Q9BVC4 326 aa13.15□□□□□ -0.3
CPSF4-201ENST00000292476 SAMD10Q9BYL1 202 aa13.15□□□□□ -0.3
CPSF4-201ENST00000292476 MRPL27Q9P0M9 148 aaKnown RBP13.15□□□□□ -0.3
CPSF4-201ENST00000292476 SOX21Q9Y651 276 aaPredicted RBP13.15□□□□□ -0.3
CPSF4-201ENST00000292476 NSD1Q96L73 2696 aaPredicted RBP13.15□□□□□ -0.3
CPSF4-201ENST00000292476 TRBV6-1A0A0K0K1D8 114 aa13.15□□□□□ -0.31
CPSF4-201ENST00000292476 PGPA6NDG6 321 aa13.15□□□□□ -0.31
CPSF4-201ENST00000292476 SCGB2A1O75556 95 aa13.15□□□□□ -0.31
CPSF4-201ENST00000292476 TCL1AP56279 114 aa13.15□□□□□ -0.31
CPSF4-201ENST00000292476 SIGLECL1Q8N7X8 197 aa13.15□□□□□ -0.31
CPSF4-201ENST00000292476 HSPB9Q9BQS6 159 aa13.15□□□□□ -0.31
CPSF4-201ENST00000292476 OTORQ9NRC9 128 aa13.15□□□□□ -0.31
CPSF4-201ENST00000292476 ZNF586Q9NXT0 402 aa13.15□□□□□ -0.31
CPSF4-201ENST00000292476 SONP18583 2426 aaKnown RBP13.14□□□□□ -0.31
CPSF4-201ENST00000292476 LTAP01374 205 aa13.14□□□□□ -0.31
CPSF4-201ENST00000292476 GPX1P07203 203 aa13.14□□□□□ -0.31
CPSF4-201ENST00000292476 MRPL54Q6P161 138 aaKnown RBP13.14□□□□□ -0.31
CPSF4-201ENST00000292476 C20orf144Q9BQM9 153 aa13.14□□□□□ -0.31
CPSF4-201ENST00000292476 TRAV34A0A0B4J273 112 aa13.13□□□□□ -0.31
CPSF4-201ENST00000292476 OR2J3O76001 311 aa13.13□□□□□ -0.31
CPSF4-201ENST00000292476 NDPQ00604 133 aa13.13□□□□□ -0.31
CPSF4-201ENST00000292476 UNQ5815/PRO19632Q6UWF5 114 aa13.13□□□□□ -0.31
CPSF4-201ENST00000292476 TMEM219Q86XT9 240 aa13.13□□□□□ -0.31
CPSF4-201ENST00000292476 NHLRC2Q8NBF2 726 aa13.13□□□□□ -0.31
CPSF4-201ENST00000292476 NUP35Q8NFH5 326 aa13.13□□□□□ -0.31
CPSF4-201ENST00000292476 FAM110DQ8TAY7 271 aaPredicted RBP13.13□□□□□ -0.31
CPSF4-201ENST00000292476 C2CD3Q4AC94 2353 aa13.13□□□□□ -0.31
CPSF4-201ENST00000292476 IGLV11-55A0A075B6I3 123 aa13.12□□□□□ -0.31
CPSF4-201ENST00000292476 TRAV30A0A087WSZ9 112 aa13.12□□□□□ -0.31
CPSF4-201ENST00000292476 FAM231BA6NCW3 169 aa13.12□□□□□ -0.31
CPSF4-201ENST00000292476 ZNF705FA8MVS1 300 aaPredicted RBP13.12□□□□□ -0.31
CPSF4-201ENST00000292476 TCRAP04437 139 aa13.12□□□□□ -0.31
CPSF4-201ENST00000292476 ZNF705DP0CH99 300 aaPredicted RBP13.12□□□□□ -0.31
CPSF4-201ENST00000292476 ZNF705BP0CI00 300 aaPredicted RBP13.12□□□□□ -0.31
CPSF4-201ENST00000292476 EGR2P11161 476 aaPredicted RBP13.12□□□□□ -0.31
CPSF4-201ENST00000292476 CRIP2P52943 208 aaPredicted RBP13.12□□□□□ -0.31
CPSF4-201ENST00000292476 GNG5P63218 68 aa13.12□□□□□ -0.31
CPSF4-201ENST00000292476 KLF5Q13887 457 aaPredicted RBP13.12□□□□□ -0.31
CPSF4-201ENST00000292476 DEFB112Q30KQ8 113 aa13.12□□□□□ -0.31
CPSF4-201ENST00000292476 ASPHD1Q5U4P2 390 aa13.12□□□□□ -0.31
CPSF4-201ENST00000292476 S100A7AQ86SG5 101 aa13.12□□□□□ -0.31
CPSF4-201ENST00000292476 BLNKQ8WV28 456 aa13.12□□□□□ -0.31
CPSF4-201ENST00000292476 PRSS22Q9GZN4 317 aa13.12□□□□□ -0.31
CPSF4-201ENST00000292476 GFRA4Q9GZZ7 299 aa13.12□□□□□ -0.31
CPSF4-201ENST00000292476 Q9H3A6 140 aa13.12□□□□□ -0.31
CPSF4-201ENST00000292476 ANK3Q12955 4377 aaKnown RBP13.12□□□□□ -0.31
CPSF4-201ENST00000292476 ATP6V0E1O15342 81 aa13.12□□□□□ -0.31
CPSF4-201ENST00000292476 ZNF253O75346 499 aa13.12□□□□□ -0.31
CPSF4-201ENST00000292476 PSG1P11464 419 aa13.12□□□□□ -0.31
CPSF4-201ENST00000292476 SRIP30626 198 aa13.12□□□□□ -0.31
CPSF4-201ENST00000292476 KLK9Q2XQG4 91 aa13.12□□□□□ -0.31
CPSF4-201ENST00000292476 ZNF600Q6ZNG1 722 aa13.12□□□□□ -0.31
CPSF4-201ENST00000292476 ZNF48Q96MX3 618 aaPredicted RBP13.12□□□□□ -0.31
CPSF4-201ENST00000292476 SLC25A39Q9BZJ4 359 aaPredicted RBP13.12□□□□□ -0.31
CPSF4-201ENST00000292476 RPP21Q9H633 154 aaKnown RBP13.12□□□□□ -0.31
CPSF4-201ENST00000292476 KLK9Q9UKQ9 250 aa13.12□□□□□ -0.31
CPSF4-201ENST00000292476 NIPBLQ6KC79 2804 aaeCLIP13.11□□□□□ -0.31
CPSF4-201ENST00000292476 A0A1B0GXF2 115 aa13.11□□□□□ -0.31
CPSF4-201ENST00000292476 A8MWL6 223 aa13.11□□□□□ -0.31
CPSF4-201ENST00000292476 SPINK4O60575 86 aa13.11□□□□□ -0.31
CPSF4-201ENST00000292476 ZNF324O75467 553 aaPredicted RBP13.11□□□□□ -0.31
CPSF4-201ENST00000292476 SSTP61278 116 aa13.11□□□□□ -0.31
CPSF4-201ENST00000292476 LY6EQ16553 131 aa13.11□□□□□ -0.31
CPSF4-201ENST00000292476 TOMM20LQ6UXN7 152 aa13.11□□□□□ -0.31
CPSF4-201ENST00000292476 NF1P21359 2839 aa13.11□□□□□ -0.31
CPSF4-201ENST00000292476 PLXNB1O43157 2135 aa13.1□□□□□ -0.31
CPSF4-201ENST00000292476 A0A1W2PS18 150 aa13.1□□□□□ -0.31
CPSF4-201ENST00000292476 C19orf71A6NCJ1 209 aa13.1□□□□□ -0.31
CPSF4-201ENST00000292476 F2Z2F3 143 aa13.1□□□□□ -0.31
CPSF4-201ENST00000292476 K7EIM0 57 aa13.1□□□□□ -0.31
CPSF4-201ENST00000292476 CA1P00915 261 aaPredicted RBP13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 89.1 ms