RNA–Protein interactions for RNA: ENST00000284771.6

PDLIM3-203, Transcript of PDZ and LIM domain 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDLIM3, Length 1,672 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-203ENST00000284771 NDUFB4O95168 129 aa16.36■□□□□ 0.21
PDLIM3-203ENST00000284771 UBE2L3P68036 154 aaKnown RBP16.36■□□□□ 0.21
PDLIM3-203ENST00000284771 BLOC1S1P78537 153 aa16.36■□□□□ 0.21
PDLIM3-203ENST00000284771 RBPMS2Q6ZRY4 209 aaKnown RBP16.36■□□□□ 0.21
PDLIM3-203ENST00000284771 BLNKQ8WV28 456 aa16.36■□□□□ 0.21
PDLIM3-203ENST00000284771 NRN1Q9NPD7 142 aa16.36■□□□□ 0.21
PDLIM3-203ENST00000284771 TRBV19A0A075B6N1 114 aa16.35■□□□□ 0.21
PDLIM3-203ENST00000284771 WIPF1O43516 503 aa16.35■□□□□ 0.21
PDLIM3-203ENST00000284771 CD5P06127 495 aa16.35■□□□□ 0.21
PDLIM3-203ENST00000284771 ATF4P18848 351 aaPredicted RBP16.35■□□□□ 0.21
PDLIM3-203ENST00000284771 LRRC20Q8TCA0 184 aa16.35■□□□□ 0.21
PDLIM3-203ENST00000284771 SOCS3O14543 225 aa16.34■□□□□ 0.21
PDLIM3-203ENST00000284771 RGS13O14921 159 aa16.34■□□□□ 0.21
PDLIM3-203ENST00000284771 TFPI2P48307 235 aa16.34■□□□□ 0.21
PDLIM3-203ENST00000284771 IGFL4Q6B9Z1 124 aa16.34■□□□□ 0.21
PDLIM3-203ENST00000284771 IQCF2Q8IXL9 164 aa16.34■□□□□ 0.21
PDLIM3-203ENST00000284771 WFDC3Q8IUB2 231 aa16.34■□□□□ 0.21
PDLIM3-203ENST00000284771 FAM24BQ8N5W8 94 aa16.34■□□□□ 0.21
PDLIM3-203ENST00000284771 ZNF256Q9Y2P7 627 aaPredicted RBP16.34■□□□□ 0.21
PDLIM3-203ENST00000284771 MGAM2Q2M2H8 2515 aa16.33■□□□□ 0.2
PDLIM3-203ENST00000284771 TRAV25A0A0B4J276 109 aa16.33■□□□□ 0.2
PDLIM3-203ENST00000284771 TRAV8-2A0A0B4J237 113 aa16.32■□□□□ 0.2
PDLIM3-203ENST00000284771 K7EQG2 157 aa16.32■□□□□ 0.2
PDLIM3-203ENST00000284771 OR2K2Q8NGT1 345 aa16.32■□□□□ 0.2
PDLIM3-203ENST00000284771 ZNF331Q9NQX6 463 aaPredicted RBP16.32■□□□□ 0.2
PDLIM3-203ENST00000284771 RANP62826 216 aaKnown RBP16.31■□□□□ 0.2
PDLIM3-203ENST00000284771 TMEM167BQ9NRX6 74 aa16.31■□□□□ 0.2
PDLIM3-203ENST00000284771 HBE1P02100 147 aa16.3■□□□□ 0.2
PDLIM3-203ENST00000284771 HLA-DMBP28068 263 aa16.3■□□□□ 0.2
PDLIM3-203ENST00000284771 PSMB3P49720 205 aa16.3■□□□□ 0.2
PDLIM3-203ENST00000284771 GUCA2BQ16661 112 aa16.3■□□□□ 0.2
PDLIM3-203ENST00000284771 GUK1Q16774 197 aa16.3■□□□□ 0.2
PDLIM3-203ENST00000284771 SPAG8Q99932 426 aaPredicted RBP16.3■□□□□ 0.2
PDLIM3-203ENST00000284771 TEX46H3BTG2 121 aa16.3■□□□□ 0.2
PDLIM3-203ENST00000284771 DNASE2O00115 360 aaPredicted RBP16.3■□□□□ 0.2
PDLIM3-203ENST00000284771 PDE6HQ13956 83 aa16.3■□□□□ 0.2
PDLIM3-203ENST00000284771 LCN12Q6JVE5 192 aa16.3■□□□□ 0.2
PDLIM3-203ENST00000284771 EXOC3-AS1Q8N2X6 119 aa16.3■□□□□ 0.2
PDLIM3-203ENST00000284771 YTHDF2Q9Y5A9 579 aaKnown RBP16.3■□□□□ 0.2
PDLIM3-203ENST00000284771 PRB4P10163 310 aaPredicted RBP16.29■□□□□ 0.2
PDLIM3-203ENST00000284771 UBE2G2P60604 165 aa16.29■□□□□ 0.2
PDLIM3-203ENST00000284771 PAFAH1B2P68402 229 aa16.29■□□□□ 0.2
PDLIM3-203ENST00000284771 CLLU1Q5K131 121 aa16.29■□□□□ 0.2
PDLIM3-203ENST00000284771 RNF182Q8N6D2 247 aa16.29■□□□□ 0.2
PDLIM3-203ENST00000284771 G3V4G9 280 aa16.28■□□□□ 0.2
PDLIM3-203ENST00000284771 ZNF253O75346 499 aa16.28■□□□□ 0.2
PDLIM3-203ENST00000284771 MEOX2P50222 304 aa16.28■□□□□ 0.2
PDLIM3-203ENST00000284771 C16orf92Q96LL3 132 aa16.28■□□□□ 0.2
PDLIM3-203ENST00000284771 C20orf173Q96LM9 149 aa16.28■□□□□ 0.2
PDLIM3-203ENST00000284771 FAM74A7A6NL05 159 aa16.27■□□□□ 0.2
PDLIM3-203ENST00000284771 BEAN1Q3B7T3 259 aa16.27■□□□□ 0.2
PDLIM3-203ENST00000284771 Q9H3A6 140 aa16.27■□□□□ 0.2
PDLIM3-203ENST00000284771 GNG13Q9P2W3 67 aa16.27■□□□□ 0.2
PDLIM3-203ENST00000284771 TRAV2A0A0B4J234 112 aa16.27■□□□□ 0.19
PDLIM3-203ENST00000284771 PAGE4O60829 102 aa16.27■□□□□ 0.19
PDLIM3-203ENST00000284771 RAB14P61106 215 aa16.27■□□□□ 0.19
PDLIM3-203ENST00000284771 PMS2P11Q13670 270 aa16.27■□□□□ 0.19
PDLIM3-203ENST00000284771 SAMD5Q5TGI4 173 aa16.27■□□□□ 0.19
PDLIM3-203ENST00000284771 NOTCH1P46531 2555 aa16.26■□□□□ 0.19
PDLIM3-203ENST00000284771 A0A1W2PRE2 83 aa16.26■□□□□ 0.19
PDLIM3-203ENST00000284771 GGTLC3B5MD39 225 aa16.26■□□□□ 0.19
PDLIM3-203ENST00000284771 M0R3E3 92 aa16.26■□□□□ 0.19
PDLIM3-203ENST00000284771 ISLRO14498 428 aa16.26■□□□□ 0.19
PDLIM3-203ENST00000284771 SLC50A1Q9BRV3 221 aa16.26■□□□□ 0.19
PDLIM3-203ENST00000284771 OR4C46A6NHA9 309 aa16.25■□□□□ 0.19
PDLIM3-203ENST00000284771 CD7P09564 240 aa16.25■□□□□ 0.19
PDLIM3-203ENST00000284771 ZNF688P0C7X2 276 aa16.25■□□□□ 0.19
PDLIM3-203ENST00000284771 KRTAP10-11P60412 298 aa16.25■□□□□ 0.19
PDLIM3-203ENST00000284771 ICAM4Q14773 271 aa16.25■□□□□ 0.19
PDLIM3-203ENST00000284771 NBEAL1Q6ZS30 2694 aa16.25■□□□□ 0.19
PDLIM3-203ENST00000284771 PGPA6NDG6 321 aa16.24■□□□□ 0.19
PDLIM3-203ENST00000284771 ZNF705FA8MVS1 300 aaPredicted RBP16.24■□□□□ 0.19
PDLIM3-203ENST00000284771 DEFB1P60022 68 aa16.24■□□□□ 0.19
PDLIM3-203ENST00000284771 SUMO1P63165 101 aaKnown RBP16.24■□□□□ 0.19
PDLIM3-203ENST00000284771 PSG9Q00887 426 aa16.24■□□□□ 0.19
PDLIM3-203ENST00000284771 EGFEM1PQ0D2K5 195 aa16.24■□□□□ 0.19
PDLIM3-203ENST00000284771 LYPD1Q8N2G4 141 aa16.24■□□□□ 0.19
PDLIM3-203ENST00000284771 RARRES2Q99969 163 aa16.24■□□□□ 0.19
PDLIM3-203ENST00000284771 ATP5G3P48201 142 aa16.24■□□□□ 0.19
PDLIM3-203ENST00000284771 HAGHQ16775 308 aa16.24■□□□□ 0.19
PDLIM3-203ENST00000284771 ODF3L2Q3SX64 289 aa16.24■□□□□ 0.19
PDLIM3-203ENST00000284771 CCDC28AQ8IWP9 274 aa16.24■□□□□ 0.19
PDLIM3-203ENST00000284771 LINC00052Q96N35 136 aa16.24■□□□□ 0.19
PDLIM3-203ENST00000284771 GPR61Q9BZJ8 451 aa16.23■□□□□ 0.19
PDLIM3-203ENST00000284771 OTORQ9NRC9 128 aa16.23■□□□□ 0.19
PDLIM3-203ENST00000284771 C19orf73Q9NVV2 129 aa16.23■□□□□ 0.19
PDLIM3-203ENST00000284771 ZNF124Q15973 351 aa16.22■□□□□ 0.19
PDLIM3-203ENST00000284771 PSG3Q16557 428 aa16.22■□□□□ 0.19
PDLIM3-203ENST00000284771 PSMG4Q5JS54 123 aa16.22■□□□□ 0.19
PDLIM3-203ENST00000284771 CST9LP1Q5W188 147 aa16.22■□□□□ 0.19
PDLIM3-203ENST00000284771 AAMDCQ9H7C9 122 aa16.22■□□□□ 0.19
PDLIM3-203ENST00000284771 MAP6D1Q9H9H5 199 aa16.22■□□□□ 0.19
PDLIM3-203ENST00000284771 MANBALQ9NQG1 85 aa16.22■□□□□ 0.19
PDLIM3-203ENST00000284771 AGRNO00468 2067 aa16.22■□□□□ 0.19
PDLIM3-203ENST00000284771 PRAC2D3DTV9 90 aa16.21■□□□□ 0.19
PDLIM3-203ENST00000284771 BCL2P10415 239 aa16.21■□□□□ 0.19
PDLIM3-203ENST00000284771 ID1P41134 155 aa16.21■□□□□ 0.19
PDLIM3-203ENST00000284771 PPT1P50897 306 aa16.21■□□□□ 0.19
PDLIM3-203ENST00000284771 SNRPD3P62318 126 aaKnown RBP16.21■□□□□ 0.19
PDLIM3-203ENST00000284771 SAMD13Q5VXD3 122 aa16.21■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 222.8 ms