RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 THAP8Q8NA92 274 aa10.09□□□□□ -0.79
LIG1-201ENST00000263274 TMUB1Q9BVT8 246 aa10.09□□□□□ -0.79
LIG1-201ENST00000263274 SLC25A39Q9BZJ4 359 aaPredicted RBP10.09□□□□□ -0.79
LIG1-201ENST00000263274 LINC00574Q9H8X3 128 aa10.09□□□□□ -0.79
LIG1-201ENST00000263274 NGBQ9NPG2 151 aa10.09□□□□□ -0.79
LIG1-201ENST00000263274 PPIAL4CA0A0B4J2A2 164 aa10.08□□□□□ -0.8
LIG1-201ENST00000263274 PPIAL4GP0DN37 164 aa10.08□□□□□ -0.8
LIG1-201ENST00000263274 OR8A1Q8NGG7 326 aa10.08□□□□□ -0.8
LIG1-201ENST00000263274 FMC1Q96HJ9 113 aa10.08□□□□□ -0.8
LIG1-201ENST00000263274 MAP1LC3CQ9BXW4 147 aa10.08□□□□□ -0.8
LIG1-201ENST00000263274 TMEM191AQ9H0A3 160 aa10.08□□□□□ -0.8
LIG1-201ENST00000263274 IGHV1-3A0A0C4DH29 117 aa10.08□□□□□ -0.8
LIG1-201ENST00000263274 E7EQL1 145 aa10.08□□□□□ -0.8
LIG1-201ENST00000263274 TMEM155Q4W5P6 130 aa10.08□□□□□ -0.8
LIG1-201ENST00000263274 FA2HQ7L5A8 372 aa10.08□□□□□ -0.8
LIG1-201ENST00000263274 TRGV9Q99603 122 aa10.08□□□□□ -0.8
LIG1-201ENST00000263274 IGHV1-24A0A0C4DH33 117 aa10.08□□□□□ -0.8
LIG1-201ENST00000263274 NCBP2LA6PVI3 153 aaKnown RBP10.08□□□□□ -0.8
LIG1-201ENST00000263274 ARMS2P0C7Q2 107 aa10.08□□□□□ -0.8
LIG1-201ENST00000263274 C2orf70A6NJV1 201 aa10.07□□□□□ -0.8
LIG1-201ENST00000263274 APOHP02749 345 aaPredicted RBP10.07□□□□□ -0.8
LIG1-201ENST00000263274 CT45A10P0DMU9 189 aa10.07□□□□□ -0.8
LIG1-201ENST00000263274 RASL11AQ6T310 242 aa10.07□□□□□ -0.8
LIG1-201ENST00000263274 AP1S3Q96PC3 154 aa10.07□□□□□ -0.8
LIG1-201ENST00000263274 SYS1-DBNDD2H3BUS1 97 aa10.07□□□□□ -0.8
LIG1-201ENST00000263274 TEX45Q8NA69 505 aa10.07□□□□□ -0.8
LIG1-201ENST00000263274 WIPF2Q8TF74 440 aaPredicted RBP10.07□□□□□ -0.8
LIG1-201ENST00000263274 K7EQM0 130 aa10.06□□□□□ -0.8
LIG1-201ENST00000263274 GNG7O60262 68 aa10.06□□□□□ -0.8
LIG1-201ENST00000263274 CEACAM4O75871 244 aa10.06□□□□□ -0.8
LIG1-201ENST00000263274 BPIFA4PQ86YQ2 179 aa10.06□□□□□ -0.8
LIG1-201ENST00000263274 F11RQ9Y624 299 aaKnown RBP10.06□□□□□ -0.8
LIG1-201ENST00000263274 PKD1L2Q7Z442 2459 aa10.06□□□□□ -0.8
LIG1-201ENST00000263274 GP9P14770 177 aa10.06□□□□□ -0.8
LIG1-201ENST00000263274 IGFL4Q6B9Z1 124 aa10.06□□□□□ -0.8
LIG1-201ENST00000263274 ATP5L2Q7Z4Y8 100 aa10.06□□□□□ -0.8
LIG1-201ENST00000263274 WFDC3Q8IUB2 231 aa10.06□□□□□ -0.8
LIG1-201ENST00000263274 TIMM23O14925 209 aa10.06□□□□□ -0.8
LIG1-201ENST00000263274 CD3EP07766 207 aa10.06□□□□□ -0.8
LIG1-201ENST00000263274 PF4V1P10720 104 aa10.06□□□□□ -0.8
LIG1-201ENST00000263274 FAM162BQ5T6X4 162 aa10.06□□□□□ -0.8
LIG1-201ENST00000263274 SVEP1Q4LDE5 3571 aa10.06□□□□□ -0.8
LIG1-201ENST00000263274 A0A1B0GUT8 65 aa10.05□□□□□ -0.8
LIG1-201ENST00000263274 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP10.05□□□□□ -0.8
LIG1-201ENST00000263274 OR5AL1P0C617 328 aa10.05□□□□□ -0.8
LIG1-201ENST00000263274 SLC25A34Q6PIV7 304 aa10.05□□□□□ -0.8
LIG1-201ENST00000263274 IGFL3Q6UXB1 125 aa10.05□□□□□ -0.8
LIG1-201ENST00000263274 Q86TA4 180 aa10.05□□□□□ -0.8
LIG1-201ENST00000263274 TMEM116Q8NCL8 245 aa10.05□□□□□ -0.8
LIG1-201ENST00000263274 URB1-AS1Q96HZ7 61 aa10.05□□□□□ -0.8
LIG1-201ENST00000263274 PSG9Q00887 426 aa10.05□□□□□ -0.8
LIG1-201ENST00000263274 NAA38Q9BRA0 125 aaKnown RBP10.05□□□□□ -0.8
LIG1-201ENST00000263274 A0A087X0K7 114 aa10.05□□□□□ -0.8
LIG1-201ENST00000263274 B9A039 149 aa10.05□□□□□ -0.8
LIG1-201ENST00000263274 BUB1B-PAK6H3BSN5 160 aa10.05□□□□□ -0.8
LIG1-201ENST00000263274 OR2J3O76001 311 aa10.05□□□□□ -0.8
LIG1-201ENST00000263274 IGLC1P0CG04 106 aa10.05□□□□□ -0.8
LIG1-201ENST00000263274 UQCRFS1P47985 274 aa10.05□□□□□ -0.8
LIG1-201ENST00000263274 KLRD1Q13241 179 aa10.05□□□□□ -0.8
LIG1-201ENST00000263274 OTORQ9NRC9 128 aa10.05□□□□□ -0.8
LIG1-201ENST00000263274 AP5S1Q9NUS5 200 aa10.05□□□□□ -0.8
LIG1-201ENST00000263274 ASH1LQ9NR48 2969 aaKnown RBP10.04□□□□□ -0.8
LIG1-201ENST00000263274 GAGE10A6NGK3 116 aa10.04□□□□□ -0.8
LIG1-201ENST00000263274 TAX1BP3O14907 124 aa10.04□□□□□ -0.8
LIG1-201ENST00000263274 FSTL3O95633 263 aa10.04□□□□□ -0.8
LIG1-201ENST00000263274 LTAP01374 205 aa10.04□□□□□ -0.8
LIG1-201ENST00000263274 RIGQ13278 110 aa10.04□□□□□ -0.8
LIG1-201ENST00000263274 KLF5Q13887 457 aaPredicted RBP10.04□□□□□ -0.8
LIG1-201ENST00000263274 C3orf36Q3SXR2 165 aa10.04□□□□□ -0.8
LIG1-201ENST00000263274 PSG8Q9UQ74 426 aa10.04□□□□□ -0.8
LIG1-201ENST00000263274 MYCNOSP40205 109 aa10.04□□□□□ -0.8
LIG1-201ENST00000263274 MLST8Q9BVC4 326 aa10.04□□□□□ -0.8
LIG1-201ENST00000263274 CSMD1Q96PZ7 3565 aa10.04□□□□□ -0.8
LIG1-201ENST00000263274 A0A1B0GXF2 115 aa10.03□□□□□ -0.8
LIG1-201ENST00000263274 LIPFP07098 398 aa10.03□□□□□ -0.8
LIG1-201ENST00000263274 SCGB2A2Q13296 93 aa10.03□□□□□ -0.8
LIG1-201ENST00000263274 BCL6BQ8N143 479 aaPredicted RBP10.03□□□□□ -0.8
LIG1-201ENST00000263274 MUC15Q8N387 334 aa10.03□□□□□ -0.8
LIG1-201ENST00000263274 LINC00311Q8N616 119 aa10.03□□□□□ -0.8
LIG1-201ENST00000263274 C7orf69Q9H7B7 122 aa10.03□□□□□ -0.8
LIG1-201ENST00000263274 AAMDCQ9H7C9 122 aa10.03□□□□□ -0.8
LIG1-201ENST00000263274 IGHV3OR16-13A0A075B7E8 117 aa10.03□□□□□ -0.8
LIG1-201ENST00000263274 IGHV3-74A0A0B4J1X5 117 aa10.03□□□□□ -0.8
LIG1-201ENST00000263274 HLA-DRB1P01911 266 aa10.03□□□□□ -0.8
LIG1-201ENST00000263274 C8orf49Q96NF6 230 aa10.03□□□□□ -0.8
LIG1-201ENST00000263274 APOBEC3AP31941 199 aaPredicted RBP10.03□□□□□ -0.8
LIG1-201ENST00000263274 CSN1S1P47710 185 aa10.03□□□□□ -0.8
LIG1-201ENST00000263274 KLF12Q9Y4X4 402 aa10.03□□□□□ -0.8
LIG1-201ENST00000263274 IGKV1-17P01599 117 aa10.02□□□□□ -0.81
LIG1-201ENST00000263274 RNF125Q96EQ8 232 aa10.02□□□□□ -0.81
LIG1-201ENST00000263274 HSPB8Q9UJY1 196 aa10.02□□□□□ -0.81
LIG1-201ENST00000263274 CRYGCP07315 174 aa10.02□□□□□ -0.81
LIG1-201ENST00000263274 OR1N2Q8NGR9 330 aa10.02□□□□□ -0.81
LIG1-201ENST00000263274 TRAV8-6A0A0B4J262 113 aa10.01□□□□□ -0.81
LIG1-201ENST00000263274 TMEM213A2RRL7 107 aa10.01□□□□□ -0.81
LIG1-201ENST00000263274 C19orf71A6NCJ1 209 aa10.01□□□□□ -0.81
LIG1-201ENST00000263274 MRGPRG-AS1Q2M3A8 158 aa10.01□□□□□ -0.81
LIG1-201ENST00000263274 PRSS22Q9GZN4 317 aa10.01□□□□□ -0.81
LIG1-201ENST00000263274 IGKV2-40A0A087WW87 121 aaPredicted RBP10.01□□□□□ -0.81
LIG1-201ENST00000263274 SHISA9B4DS77 424 aa10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 65.2 ms