RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 A0A0A6YYD4 124 aa10.4□□□□□ -0.75
USP40-201ENST00000251722 H3BMM0 161 aa10.4□□□□□ -0.75
USP40-201ENST00000251722 NMSQ5H8A3 153 aa10.4□□□□□ -0.75
USP40-201ENST00000251722 PTH2Q96A98 100 aa10.4□□□□□ -0.75
USP40-201ENST00000251722 UBE2WQ96B02 151 aa10.4□□□□□ -0.75
USP40-201ENST00000251722 LMO1P25800 156 aa10.39□□□□□ -0.75
USP40-201ENST00000251722 TSKUQ8WUA8 353 aa10.39□□□□□ -0.75
USP40-201ENST00000251722 COL8A2P25067 703 aa10.39□□□□□ -0.75
USP40-201ENST00000251722 PDE6HQ13956 83 aa10.39□□□□□ -0.75
USP40-201ENST00000251722 KLHL30-AS1Q8NEE0 82 aa10.39□□□□□ -0.75
USP40-201ENST00000251722 DAZ1Q9NQZ3 744 aaKnown RBP10.39□□□□□ -0.75
USP40-201ENST00000251722 IGKV1D-17A0A075B6S4 117 aa10.39□□□□□ -0.75
USP40-201ENST00000251722 ATP5G3P48201 142 aa10.39□□□□□ -0.75
USP40-201ENST00000251722 C18orf15Q96N68 181 aa10.39□□□□□ -0.75
USP40-201ENST00000251722 SELENOKQ9Y6D0 94 aa10.39□□□□□ -0.75
USP40-201ENST00000251722 IGKV3OR2-268A0A0C4DH90 116 aa10.39□□□□□ -0.75
USP40-201ENST00000251722 H3BUA1 57 aa10.39□□□□□ -0.75
USP40-201ENST00000251722 COX8AP10176 69 aa10.39□□□□□ -0.75
USP40-201ENST00000251722 CKAP5Q14008 2032 aa10.39□□□□□ -0.75
USP40-201ENST00000251722 HGFACQ04756 655 aa10.38□□□□□ -0.75
USP40-201ENST00000251722 PSPNO60542 156 aa10.38□□□□□ -0.75
USP40-201ENST00000251722 SAA4P35542 130 aa10.38□□□□□ -0.75
USP40-201ENST00000251722 ZNF138P52744 262 aa10.38□□□□□ -0.75
USP40-201ENST00000251722 RPL36AP83881 106 aaKnown RBP10.38□□□□□ -0.75
USP40-201ENST00000251722 TEX36Q5VZQ5 186 aa10.38□□□□□ -0.75
USP40-201ENST00000251722 SPATA31B1PQ5VZV4 182 aa10.38□□□□□ -0.75
USP40-201ENST00000251722 RPL36ALQ969Q0 106 aaKnown RBP10.38□□□□□ -0.75
USP40-201ENST00000251722 HIGD1CA8MV81 97 aa10.38□□□□□ -0.75
USP40-201ENST00000251722 PRR32B1ATL7 298 aa10.38□□□□□ -0.75
USP40-201ENST00000251722 IGKV1-27A0A075B6S5 117 aa10.38□□□□□ -0.75
USP40-201ENST00000251722 SLC25A20O43772 301 aa10.38□□□□□ -0.75
USP40-201ENST00000251722 IGLC1P0CG04 106 aa10.38□□□□□ -0.75
USP40-201ENST00000251722 CFHR2P36980 270 aa10.38□□□□□ -0.75
USP40-201ENST00000251722 SFTA2Q6UW10 78 aa10.38□□□□□ -0.75
USP40-201ENST00000251722 MRPL55Q7Z7F7 128 aaKnown RBP10.38□□□□□ -0.75
USP40-201ENST00000251722 SLC25A39Q9BZJ4 359 aaPredicted RBP10.38□□□□□ -0.75
USP40-201ENST00000251722 VWA8A3KMH1 1905 aa10.37□□□□□ -0.75
USP40-201ENST00000251722 LINC01619G3V211 115 aa10.37□□□□□ -0.75
USP40-201ENST00000251722 IGLV1-44P01699 117 aa10.37□□□□□ -0.75
USP40-201ENST00000251722 KLK15Q9H2R5 256 aa10.37□□□□□ -0.75
USP40-201ENST00000251722 RNF223E7ERA6 249 aa10.37□□□□□ -0.75
USP40-201ENST00000251722 TAL2Q16559 108 aa10.37□□□□□ -0.75
USP40-201ENST00000251722 IGFL2Q6UWQ7 119 aa10.37□□□□□ -0.75
USP40-201ENST00000251722 TREML4Q6UXN2 200 aa10.37□□□□□ -0.75
USP40-201ENST00000251722 Q96MF0 132 aa10.37□□□□□ -0.75
USP40-201ENST00000251722 IGHV1-24A0A0C4DH33 117 aa10.37□□□□□ -0.75
USP40-201ENST00000251722 RCHY1Q96PM5 261 aa10.37□□□□□ -0.75
USP40-201ENST00000251722 A0A1B0GUS0 222 aa10.36□□□□□ -0.75
USP40-201ENST00000251722 RPRMLQ8N4K4 120 aa10.36□□□□□ -0.75
USP40-201ENST00000251722 SIGLEC8Q9NYZ4 499 aa10.36□□□□□ -0.75
USP40-201ENST00000251722 AHCTF1Q8WYP5 2266 aa10.36□□□□□ -0.75
USP40-201ENST00000251722 UTF1Q5T230 341 aa10.36□□□□□ -0.75
USP40-201ENST00000251722 OCC1Q8TAD7 63 aa10.36□□□□□ -0.75
USP40-201ENST00000251722 WFDC1Q9HC57 220 aa10.36□□□□□ -0.75
USP40-201ENST00000251722 TMEM14EPQ6UXP3 125 aa10.36□□□□□ -0.75
USP40-201ENST00000251722 COQ2Q96H96 371 aa10.36□□□□□ -0.75
USP40-201ENST00000251722 ADARB2-AS1A8MUL3 147 aa10.36□□□□□ -0.75
USP40-201ENST00000251722 C9JAW5 83 aa10.36□□□□□ -0.75
USP40-201ENST00000251722 IGLL1P15814 213 aa10.36□□□□□ -0.75
USP40-201ENST00000251722 YPEL3P61236 119 aaPredicted RBP10.36□□□□□ -0.75
USP40-201ENST00000251722 ZNF815PA8K554 130 aa10.36□□□□□ -0.75
USP40-201ENST00000251722 FAM90A2PQ658T7 463 aa10.36□□□□□ -0.75
USP40-201ENST00000251722 LCNL1Q6ZST4 164 aa10.36□□□□□ -0.75
USP40-201ENST00000251722 HIST1H4AP62805 103 aaKnown RBP10.35□□□□□ -0.75
USP40-201ENST00000251722 C8orf31Q8N9H6 132 aa10.35□□□□□ -0.75
USP40-201ENST00000251722 C9JQL5 133 aa10.35□□□□□ -0.75
USP40-201ENST00000251722 TMEM219Q86XT9 240 aa10.35□□□□□ -0.75
USP40-201ENST00000251722 KAAG1Q9UBP8 84 aa10.35□□□□□ -0.75
USP40-201ENST00000251722 TICRRQ7Z2Z1 1910 aa10.35□□□□□ -0.75
USP40-201ENST00000251722 CD24P25063 80 aa10.35□□□□□ -0.75
USP40-201ENST00000251722 APOC4P55056 127 aa10.35□□□□□ -0.75
USP40-201ENST00000251722 AMN1Q8IY45 258 aa10.35□□□□□ -0.75
USP40-201ENST00000251722 TMEM86BQ8N661 226 aa10.35□□□□□ -0.75
USP40-201ENST00000251722 C15orf53Q8NAA6 179 aa10.35□□□□□ -0.75
USP40-201ENST00000251722 IGLV3-9A0A075B6K5 115 aa10.34□□□□□ -0.75
USP40-201ENST00000251722 NDUFA3O95167 84 aa10.34□□□□□ -0.75
USP40-201ENST00000251722 ELANEP08246 267 aa10.34□□□□□ -0.75
USP40-201ENST00000251722 HAPLN4Q86UW8 402 aa10.34□□□□□ -0.75
USP40-201ENST00000251722 BRD3OSQ6XYD6 125 aa10.34□□□□□ -0.75
USP40-201ENST00000251722 GFI1Q99684 422 aa10.34□□□□□ -0.75
USP40-201ENST00000251722 INAFM2P0DMQ5 153 aa10.34□□□□□ -0.75
USP40-201ENST00000251722 GATA2P23769 480 aaPredicted RBP10.34□□□□□ -0.75
USP40-201ENST00000251722 C18orf32Q8TCD1 76 aa10.34□□□□□ -0.75
USP40-201ENST00000251722 RNF183Q96D59 192 aa10.34□□□□□ -0.75
USP40-201ENST00000251722 ASCC3Q8N3C0 2202 aaKnown RBP10.34□□□□□ -0.75
USP40-201ENST00000251722 A0A087WX48 190 aa10.34□□□□□ -0.75
USP40-201ENST00000251722 RHODO00212 210 aa10.34□□□□□ -0.75
USP40-201ENST00000251722 ANKRD29Q8N6D5 301 aa10.34□□□□□ -0.75
USP40-201ENST00000251722 RALGAPA1Q6GYQ0 2036 aa10.34□□□□□ -0.75
USP40-201ENST00000251722 QRFPP83859 136 aa10.33□□□□□ -0.76
USP40-201ENST00000251722 CHCHD5Q9BSY4 110 aa10.33□□□□□ -0.76
USP40-201ENST00000251722 SPTA1P02549 2419 aa10.33□□□□□ -0.76
USP40-201ENST00000251722 TSC2P49815 1807 aa10.33□□□□□ -0.76
USP40-201ENST00000251722 CR1LQ2VPA4 569 aa10.33□□□□□ -0.76
USP40-201ENST00000251722 OVOL2Q9BRP0 275 aa10.33□□□□□ -0.76
USP40-201ENST00000251722 NPIPB5A8MRT5 1133 aa10.33□□□□□ -0.76
USP40-201ENST00000251722 PLNP26678 52 aa10.33□□□□□ -0.76
USP40-201ENST00000251722 RNF182Q8N6D2 247 aa10.33□□□□□ -0.76
USP40-201ENST00000251722 LAMTOR3Q9UHA4 124 aa10.33□□□□□ -0.76
USP40-201ENST00000251722 FRMPD3Q5JV73 1810 aa10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms