RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 IGKV2-40A0A087WW87 121 aaPredicted RBP8.4□□□□□ -1.06
USP28-201ENST00000003302 SYS1-DBNDD2H3BUS1 97 aa8.4□□□□□ -1.06
USP28-201ENST00000003302 TOMM40O96008 361 aa8.4□□□□□ -1.06
USP28-201ENST00000003302 IGKV2D-40P01614 121 aaPredicted RBP8.4□□□□□ -1.06
USP28-201ENST00000003302 PTTG1IPP53801 180 aa8.4□□□□□ -1.06
USP28-201ENST00000003302 BPIFB3P59826 476 aa8.4□□□□□ -1.06
USP28-201ENST00000003302 KLF5Q13887 457 aaPredicted RBP8.4□□□□□ -1.06
USP28-201ENST00000003302 MRPL27Q9P0M9 148 aaKnown RBP8.4□□□□□ -1.06
USP28-201ENST00000003302 LOC102724200A0A096LPH7 203 aaPredicted RBP8.4□□□□□ -1.07
USP28-201ENST00000003302 A0A1W2PPR1 153 aa8.4□□□□□ -1.07
USP28-201ENST00000003302 OR1L4Q8NGR5 311 aa8.4□□□□□ -1.07
USP28-201ENST00000003302 PERPQ96FX8 193 aa8.4□□□□□ -1.07
USP28-201ENST00000003302 C19orf24Q9BVV8 132 aa8.4□□□□□ -1.07
USP28-201ENST00000003302 FAM90A27PA6NNH2 459 aa8.39□□□□□ -1.07
USP28-201ENST00000003302 K7EP13 123 aa8.39□□□□□ -1.07
USP28-201ENST00000003302 IL4P05112 153 aa8.39□□□□□ -1.07
USP28-201ENST00000003302 C8orf46Q8TAG6 207 aa8.39□□□□□ -1.07
USP28-201ENST00000003302 C1RLQ9NZP8 487 aa8.39□□□□□ -1.07
USP28-201ENST00000003302 IGHV3-66A0A0C4DH42 116 aa8.39□□□□□ -1.07
USP28-201ENST00000003302 PPIFP30405 207 aaKnown RBP8.39□□□□□ -1.07
USP28-201ENST00000003302 VMA21Q3ZAQ7 101 aa8.39□□□□□ -1.07
USP28-201ENST00000003302 SIGLEC15Q6ZMC9 328 aa8.39□□□□□ -1.07
USP28-201ENST00000003302 INS-IGF2F8WCM5 200 aa8.39□□□□□ -1.07
USP28-201ENST00000003302 FCGR2BP31994 310 aaPredicted RBP8.39□□□□□ -1.07
USP28-201ENST00000003302 IFI27P40305 119 aaPredicted RBP8.39□□□□□ -1.07
USP28-201ENST00000003302 PRSS57Q6UWY2 283 aa8.39□□□□□ -1.07
USP28-201ENST00000003302 ZNF491Q8N8L2 437 aa8.39□□□□□ -1.07
USP28-201ENST00000003302 ONECUT1Q9UBC0 465 aa8.39□□□□□ -1.07
USP28-201ENST00000003302 NUDT3O95989 172 aa8.39□□□□□ -1.07
USP28-201ENST00000003302 LINC00614P0C842 121 aa8.39□□□□□ -1.07
USP28-201ENST00000003302 AMN1Q8IY45 258 aa8.39□□□□□ -1.07
USP28-201ENST00000003302 C5orf17Q8NAS9 161 aa8.39□□□□□ -1.07
USP28-201ENST00000003302 ZNF414Q96IQ9 312 aa8.39□□□□□ -1.07
USP28-201ENST00000003302 TMEM70Q9BUB7 260 aa8.39□□□□□ -1.07
USP28-201ENST00000003302 ABCA12Q86UK0 2595 aa8.39□□□□□ -1.07
USP28-201ENST00000003302 AGRNO00468 2067 aa8.38□□□□□ -1.07
USP28-201ENST00000003302 TRGV9Q99603 122 aa8.38□□□□□ -1.07
USP28-201ENST00000003302 IGSF10Q6WRI0 2623 aa8.38□□□□□ -1.07
USP28-201ENST00000003302 IGHV3-49A0A0A0MS15 119 aa8.38□□□□□ -1.07
USP28-201ENST00000003302 MRPS12O15235 138 aaKnown RBP8.38□□□□□ -1.07
USP28-201ENST00000003302 LEPROTL1O95214 131 aa8.38□□□□□ -1.07
USP28-201ENST00000003302 PLGLAQ15195 96 aa8.38□□□□□ -1.07
USP28-201ENST00000003302 FAM71F2Q6NXP2 309 aa8.38□□□□□ -1.07
USP28-201ENST00000003302 VSTM2AQ8TAG5 236 aa8.38□□□□□ -1.07
USP28-201ENST00000003302 JKAMPQ9P055 326 aa8.38□□□□□ -1.07
USP28-201ENST00000003302 LINC01548A6NM66 108 aa8.38□□□□□ -1.07
USP28-201ENST00000003302 NPIPB6E9PJ23 425 aa8.38□□□□□ -1.07
USP28-201ENST00000003302 PRRG2O14669 202 aa8.38□□□□□ -1.07
USP28-201ENST00000003302 PVRIGQ6DKI7 326 aa8.38□□□□□ -1.07
USP28-201ENST00000003302 LINC00311Q8N616 119 aa8.38□□□□□ -1.07
USP28-201ENST00000003302 IGHG4P01861 327 aa8.38□□□□□ -1.07
USP28-201ENST00000003302 HIGD1AQ9Y241 93 aa8.38□□□□□ -1.07
USP28-201ENST00000003302 TEX15Q9BXT5 2789 aa8.37□□□□□ -1.07
USP28-201ENST00000003302 PPIAL4CA0A0B4J2A2 164 aa8.37□□□□□ -1.07
USP28-201ENST00000003302 M0QZK8 103 aa8.37□□□□□ -1.07
USP28-201ENST00000003302 PPIAL4GP0DN37 164 aa8.37□□□□□ -1.07
USP28-201ENST00000003302 GAGE1Q13065 139 aa8.37□□□□□ -1.07
USP28-201ENST00000003302 NOTCH3Q9UM47 2321 aa8.37□□□□□ -1.07
USP28-201ENST00000003302 MYO9AB2RTY4 2548 aa8.37□□□□□ -1.07
USP28-201ENST00000003302 TRBV19A0A075B6N1 114 aa8.37□□□□□ -1.07
USP28-201ENST00000003302 CNIH1O95406 144 aa8.37□□□□□ -1.07
USP28-201ENST00000003302 GATA1P15976 413 aaPredicted RBP8.37□□□□□ -1.07
USP28-201ENST00000003302 ANKRD39Q53RE8 183 aa8.37□□□□□ -1.07
USP28-201ENST00000003302 RBPMS2Q6ZRY4 209 aaKnown RBP8.37□□□□□ -1.07
USP28-201ENST00000003302 FANCD2OSQ96PS1 177 aa8.37□□□□□ -1.07
USP28-201ENST00000003302 COX11Q9Y6N1 276 aa8.37□□□□□ -1.07
USP28-201ENST00000003302 DEFB1P60022 68 aa8.37□□□□□ -1.07
USP28-201ENST00000003302 MUC15Q8N387 334 aa8.37□□□□□ -1.07
USP28-201ENST00000003302 VGLL1Q99990 258 aa8.37□□□□□ -1.07
USP28-201ENST00000003302 RASL11BQ9BPW5 248 aa8.36□□□□□ -1.07
USP28-201ENST00000003302 CHRDL1Q9BU40 450 aa8.36□□□□□ -1.07
USP28-201ENST00000003302 CBY3A6NI87 242 aa8.36□□□□□ -1.07
USP28-201ENST00000003302 PRAC2D3DTV9 90 aa8.36□□□□□ -1.07
USP28-201ENST00000003302 TAX1BP3O14907 124 aa8.36□□□□□ -1.07
USP28-201ENST00000003302 RBX1P62877 108 aa8.36□□□□□ -1.07
USP28-201ENST00000003302 HOXB4P17483 251 aaPredicted RBP8.36□□□□□ -1.07
USP28-201ENST00000003302 SUB1P53999 127 aaKnown RBP eCLIP8.36□□□□□ -1.07
USP28-201ENST00000003302 C3orf36Q3SXR2 165 aa8.36□□□□□ -1.07
USP28-201ENST00000003302 C2orf91Q6ZV80 131 aa8.36□□□□□ -1.07
USP28-201ENST00000003302 RPEQ96AT9 228 aa8.36□□□□□ -1.07
USP28-201ENST00000003302 A8MWL6 223 aa8.36□□□□□ -1.07
USP28-201ENST00000003302 D6R8Y8 96 aa8.36□□□□□ -1.07
USP28-201ENST00000003302 LY6LH3BQJ8 138 aa8.36□□□□□ -1.07
USP28-201ENST00000003302 RNF182Q8N6D2 247 aa8.36□□□□□ -1.07
USP28-201ENST00000003302 NPIPB5A8MRT5 1133 aa8.35□□□□□ -1.07
USP28-201ENST00000003302 ZNF672Q499Z4 452 aaPredicted RBP8.35□□□□□ -1.07
USP28-201ENST00000003302 DEFB104AQ8WTQ1 72 aa8.35□□□□□ -1.07
USP28-201ENST00000003302 RBM14Q96PK6 669 aaKnown RBP8.35□□□□□ -1.07
USP28-201ENST00000003302 NGBQ9NPG2 151 aa8.35□□□□□ -1.07
USP28-201ENST00000003302 CHEK1O14757 476 aa8.35□□□□□ -1.07
USP28-201ENST00000003302 LYZL1Q6UWQ5 148 aa8.35□□□□□ -1.07
USP28-201ENST00000003302 CFHR4Q92496 578 aa8.35□□□□□ -1.07
USP28-201ENST00000003302 KAAG1Q9UBP8 84 aa8.35□□□□□ -1.07
USP28-201ENST00000003302 SMAD5-AS1Q9Y6J3 95 aa8.35□□□□□ -1.07
USP28-201ENST00000003302 PIEZO1Q92508 2521 aa8.35□□□□□ -1.07
USP28-201ENST00000003302 TRAV8-6A0A0B4J262 113 aa8.35□□□□□ -1.07
USP28-201ENST00000003302 CRXO43186 299 aaPredicted RBP8.35□□□□□ -1.07
USP28-201ENST00000003302 HTR1DP28221 377 aa8.35□□□□□ -1.07
USP28-201ENST00000003302 ERCC8Q13216 396 aa8.35□□□□□ -1.07
USP28-201ENST00000003302 HES1Q14469 280 aa8.35□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 61.1 ms