RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 LTBP2Q14767 1821 aa4.11□□□□□ -1.75
SCN1A-218ENST00000640036 TRAV8-4A0A0B4J246 113 aa4.11□□□□□ -1.75
SCN1A-218ENST00000640036 C22orf46C9J442 243 aa4.11□□□□□ -1.75
SCN1A-218ENST00000640036 SFT2D2O95562 160 aa4.11□□□□□ -1.75
SCN1A-218ENST00000640036 PAX2Q02962 417 aa4.11□□□□□ -1.75
SCN1A-218ENST00000640036 UBE2V2Q15819 145 aa4.11□□□□□ -1.75
SCN1A-218ENST00000640036 ORMDL2Q53FV1 153 aa4.11□□□□□ -1.75
SCN1A-218ENST00000640036 SMPXQ9UHP9 88 aa4.11□□□□□ -1.75
SCN1A-218ENST00000640036 SHISA3A0PJX4 238 aa4.11□□□□□ -1.75
SCN1A-218ENST00000640036 VSIG8P0DPA2 414 aa4.11□□□□□ -1.75
SCN1A-218ENST00000640036 TDGF1P3P51864 188 aa4.11□□□□□ -1.75
SCN1A-218ENST00000640036 GAGE2EQ4V326 116 aa4.11□□□□□ -1.75
SCN1A-218ENST00000640036 NIT1Q86X76 327 aa4.11□□□□□ -1.75
SCN1A-218ENST00000640036 OR8D4Q8NGM9 314 aa4.11□□□□□ -1.75
SCN1A-218ENST00000640036 PLSCR2Q9NRY7 297 aa4.11□□□□□ -1.75
SCN1A-218ENST00000640036 MTFP1Q9UDX5 166 aa4.11□□□□□ -1.75
SCN1A-218ENST00000640036 GAGE2DQ9UEU5 116 aa4.11□□□□□ -1.75
SCN1A-218ENST00000640036 ADARB2-AS1A8MUL3 147 aa4.11□□□□□ -1.75
SCN1A-218ENST00000640036 SPATA45Q537H7 98 aa4.11□□□□□ -1.75
SCN1A-218ENST00000640036 GCSAMLQ5JQS6 135 aa4.11□□□□□ -1.75
SCN1A-218ENST00000640036 CFHR4Q92496 578 aa4.11□□□□□ -1.75
SCN1A-218ENST00000640036 HIST1H2BAQ96A08 127 aa4.11□□□□□ -1.75
SCN1A-218ENST00000640036 MAST4O15021 2626 aa4.1□□□□□ -1.75
SCN1A-218ENST00000640036 TRAV8-2A0A0B4J237 113 aa4.1□□□□□ -1.75
SCN1A-218ENST00000640036 A0A1W2PP11 408 aa4.1□□□□□ -1.75
SCN1A-218ENST00000640036 M0R381 172 aa4.1□□□□□ -1.75
SCN1A-218ENST00000640036 MORN2Q502X0 79 aa4.1□□□□□ -1.75
SCN1A-218ENST00000640036 GVQW1Q8N7I0 195 aa4.1□□□□□ -1.75
SCN1A-218ENST00000640036 OR4D5Q8NGN0 318 aa4.1□□□□□ -1.75
SCN1A-218ENST00000640036 CEP295Q9C0D2 2601 aa4.1□□□□□ -1.75
SCN1A-218ENST00000640036 TRAV8-7A0A075B6U6 113 aa4.1□□□□□ -1.75
SCN1A-218ENST00000640036 TRAV34A0A0B4J273 112 aa4.1□□□□□ -1.75
SCN1A-218ENST00000640036 GZMBP10144 247 aa4.1□□□□□ -1.75
SCN1A-218ENST00000640036 TIAL1Q01085 375 aaKnown RBP eCLIP4.1□□□□□ -1.75
SCN1A-218ENST00000640036 LYPD2Q6UXB3 125 aa4.1□□□□□ -1.75
SCN1A-218ENST00000640036 C8orf86Q6ZUL3 223 aa4.1□□□□□ -1.75
SCN1A-218ENST00000640036 BOD1L2Q8IYS8 172 aa4.1□□□□□ -1.75
SCN1A-218ENST00000640036 ZNF98A6NK75 572 aa4.1□□□□□ -1.75
SCN1A-218ENST00000640036 IGLL5B9A064 214 aa4.1□□□□□ -1.75
SCN1A-218ENST00000640036 CD8AP01732 235 aa4.1□□□□□ -1.75
SCN1A-218ENST00000640036 CLPSP04118 112 aa4.1□□□□□ -1.75
SCN1A-218ENST00000640036 C8orf88P0DMB2 117 aa4.1□□□□□ -1.75
SCN1A-218ENST00000640036 GAS1P54826 345 aa4.1□□□□□ -1.75
SCN1A-218ENST00000640036 GAGE2BQ13066 116 aa4.1□□□□□ -1.75
SCN1A-218ENST00000640036 ICAM4Q14773 271 aa4.1□□□□□ -1.75
SCN1A-218ENST00000640036 IBA57Q5T440 356 aaKnown RBP4.1□□□□□ -1.75
SCN1A-218ENST00000640036 FAM90A2PQ658T7 463 aa4.1□□□□□ -1.75
SCN1A-218ENST00000640036 GATAD1Q8WUU5 269 aa4.1□□□□□ -1.75
SCN1A-218ENST00000640036 MRPL27Q9P0M9 148 aaKnown RBP4.1□□□□□ -1.75
SCN1A-218ENST00000640036 USP24Q9UPU5 2620 aa4.1□□□□□ -1.75
SCN1A-218ENST00000640036 DUX4L9Q6RFH8 374 aaPredicted RBP4.1□□□□□ -1.75
SCN1A-218ENST00000640036 DNAJC9-AS1A6NH13 148 aa4.1□□□□□ -1.75
SCN1A-218ENST00000640036 LY6G6CO95867 125 aa4.1□□□□□ -1.75
SCN1A-218ENST00000640036 TMEM255AQ5JRV8 349 aa4.1□□□□□ -1.75
SCN1A-218ENST00000640036 SLC7A5P1Q8MH63 180 aa4.1□□□□□ -1.75
SCN1A-218ENST00000640036 C5orf30Q96GV9 206 aa4.1□□□□□ -1.75
SCN1A-218ENST00000640036 MESP1Q9BRJ9 268 aa4.1□□□□□ -1.75
SCN1A-218ENST00000640036 RHPN1-AS1Q9BWJ2 59 aa4.1□□□□□ -1.75
SCN1A-218ENST00000640036 GGTLC1Q9BX51 225 aa4.1□□□□□ -1.75
SCN1A-218ENST00000640036 XCL2Q9UBD3 114 aa4.1□□□□□ -1.75
SCN1A-218ENST00000640036 CRLF1O75462 422 aa4.1□□□□□ -1.75
SCN1A-218ENST00000640036 EGR2P11161 476 aaPredicted RBP4.1□□□□□ -1.75
SCN1A-218ENST00000640036 SUMO4Q6EEV6 95 aa4.1□□□□□ -1.75
SCN1A-218ENST00000640036 SLC25A48Q6ZT89 311 aaKnown RBP4.1□□□□□ -1.75
SCN1A-218ENST00000640036 LDLRAD3Q86YD5 345 aa4.1□□□□□ -1.75
SCN1A-218ENST00000640036 ATOH7Q8N100 152 aa4.1□□□□□ -1.75
SCN1A-218ENST00000640036 SIGMAR1Q99720 223 aa4.1□□□□□ -1.75
SCN1A-218ENST00000640036 GGACTQ9BVM4 153 aa4.1□□□□□ -1.75
SCN1A-218ENST00000640036 SAA2-SAA4A0A096LPE2 208 aa4.09□□□□□ -1.75
SCN1A-218ENST00000640036 PQLC2LA1A4F0 135 aa4.09□□□□□ -1.75
SCN1A-218ENST00000640036 ZNF561-AS1K7EIQ3 104 aa4.09□□□□□ -1.75
SCN1A-218ENST00000640036 OVOL3O00110 214 aa4.09□□□□□ -1.75
SCN1A-218ENST00000640036 SAA2P0DJI9 122 aaPredicted RBP4.09□□□□□ -1.75
SCN1A-218ENST00000640036 TMEM50BP56557 158 aa4.09□□□□□ -1.75
SCN1A-218ENST00000640036 EGR4Q05215 589 aa4.09□□□□□ -1.75
SCN1A-218ENST00000640036 DMRTA1Q5VZB9 504 aa4.09□□□□□ -1.75
SCN1A-218ENST00000640036 ANAPC10Q9UM13 185 aa4.09□□□□□ -1.75
SCN1A-218ENST00000640036 ADAMTS20P59510 1910 aa4.09□□□□□ -1.75
SCN1A-218ENST00000640036 IGKV1D-42A0A075B6H8 117 aa4.09□□□□□ -1.75
SCN1A-218ENST00000640036 FXYD1O00168 92 aa4.09□□□□□ -1.75
SCN1A-218ENST00000640036 HBBP68871 147 aa4.09□□□□□ -1.75
SCN1A-218ENST00000640036 FOXE3Q13461 319 aa4.09□□□□□ -1.75
SCN1A-218ENST00000640036 SPATA31B1PQ5VZV4 182 aa4.09□□□□□ -1.75
SCN1A-218ENST00000640036 CYP2G1PQ6ZSU1 146 aa4.09□□□□□ -1.75
SCN1A-218ENST00000640036 RNF125Q96EQ8 232 aa4.09□□□□□ -1.75
SCN1A-218ENST00000640036 PAGE4O60829 102 aa4.09□□□□□ -1.75
SCN1A-218ENST00000640036 FSTP19883 344 aa4.09□□□□□ -1.75
SCN1A-218ENST00000640036 TMEM95Q3KNT9 176 aa4.09□□□□□ -1.75
SCN1A-218ENST00000640036 TMEM170BQ5T4T1 132 aa4.09□□□□□ -1.75
SCN1A-218ENST00000640036 MEGF9Q9H1U4 602 aa4.09□□□□□ -1.75
SCN1A-218ENST00000640036 SIGLEC8Q9NYZ4 499 aa4.09□□□□□ -1.75
SCN1A-218ENST00000640036 SIGLEC9Q9Y336 463 aa4.09□□□□□ -1.75
SCN1A-218ENST00000640036 ANKRD17O75179 2603 aaKnown RBP4.09□□□□□ -1.75
SCN1A-218ENST00000640036 PLXNA2O75051 1894 aa4.09□□□□□ -1.75
SCN1A-218ENST00000640036 A8MWV9 139 aa4.09□□□□□ -1.75
SCN1A-218ENST00000640036 FCN3O75636 299 aa4.09□□□□□ -1.75
SCN1A-218ENST00000640036 DMKNQ6E0U4 476 aaPredicted RBP4.09□□□□□ -1.75
SCN1A-218ENST00000640036 CD200R1LQ6Q8B3 271 aa4.09□□□□□ -1.75
SCN1A-218ENST00000640036 LINC00305Q7Z4B0 112 aa4.09□□□□□ -1.75
SCN1A-218ENST00000640036 FMC1Q96HJ9 113 aa4.09□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms