RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 POLR2GP62487 172 aaKnown RBP eCLIP11.55□□□□□ -0.56
CLN3-264ENST00000637985 C4orf46Q504U0 113 aa11.55□□□□□ -0.56
CLN3-264ENST00000637985 SPATA31B1PQ5VZV4 182 aa11.55□□□□□ -0.56
CLN3-264ENST00000637985 TMEM144Q7Z5S9 345 aa11.55□□□□□ -0.56
CLN3-264ENST00000637985 OR4D5Q8NGN0 318 aa11.55□□□□□ -0.56
CLN3-264ENST00000637985 LINC00052Q96N35 136 aa11.55□□□□□ -0.56
CLN3-264ENST00000637985 CLUHP3Q96NS8 147 aa11.55□□□□□ -0.56
CLN3-264ENST00000637985 SAV1Q9H4B6 383 aaPredicted RBP11.55□□□□□ -0.56
CLN3-264ENST00000637985 LINC00854A0A1B0GVQ3 168 aa11.54□□□□□ -0.56
CLN3-264ENST00000637985 H3BP45 60 aa11.54□□□□□ -0.56
CLN3-264ENST00000637985 ISLRO14498 428 aa11.54□□□□□ -0.56
CLN3-264ENST00000637985 SOCS3O14543 225 aa11.54□□□□□ -0.56
CLN3-264ENST00000637985 IL7P13232 177 aa11.54□□□□□ -0.56
CLN3-264ENST00000637985 GALR1P47211 349 aa11.54□□□□□ -0.56
CLN3-264ENST00000637985 MEOX2P50222 304 aa11.54□□□□□ -0.56
CLN3-264ENST00000637985 AKR1C1Q04828 323 aa11.54□□□□□ -0.56
CLN3-264ENST00000637985 FOXI2Q6ZQN5 318 aa11.54□□□□□ -0.56
CLN3-264ENST00000637985 SMIM8Q96KF7 97 aa11.54□□□□□ -0.56
CLN3-264ENST00000637985 PSENENQ9NZ42 101 aa11.54□□□□□ -0.56
CLN3-264ENST00000637985 XCL2Q9UBD3 114 aa11.54□□□□□ -0.56
CLN3-264ENST00000637985 ANXA7P20073 488 aaKnown RBP11.53□□□□□ -0.56
CLN3-264ENST00000637985 KRTAP10-2P60368 255 aa11.53□□□□□ -0.56
CLN3-264ENST00000637985 ACOT7LQ6ZUV0 252 aa11.53□□□□□ -0.56
CLN3-264ENST00000637985 ZNF98A6NK75 572 aa11.52□□□□□ -0.57
CLN3-264ENST00000637985 SSSCA1O60232 199 aa11.52□□□□□ -0.57
CLN3-264ENST00000637985 ORM2P19652 201 aa11.52□□□□□ -0.57
CLN3-264ENST00000637985 GDF5OSQ5U4N7 250 aa11.52□□□□□ -0.57
CLN3-264ENST00000637985 MITD1Q8WV92 249 aa11.52□□□□□ -0.57
CLN3-264ENST00000637985 C18orf15Q96N68 181 aa11.52□□□□□ -0.57
CLN3-264ENST00000637985 GPR82Q96P67 336 aa11.52□□□□□ -0.57
CLN3-264ENST00000637985 TMEM147Q9BVK8 224 aa11.52□□□□□ -0.57
CLN3-264ENST00000637985 SLC25A32Q9H2D1 315 aa11.52□□□□□ -0.57
CLN3-264ENST00000637985 PMS2P5A8MQ11 134 aa11.51□□□□□ -0.57
CLN3-264ENST00000637985 FNDC10F2Z333 226 aa11.51□□□□□ -0.57
CLN3-264ENST00000637985 GATA2P23769 480 aaPredicted RBP11.51□□□□□ -0.57
CLN3-264ENST00000637985 PAX9P55771 341 aa11.51□□□□□ -0.57
CLN3-264ENST00000637985 TAS2R30P59541 319 aa11.51□□□□□ -0.57
CLN3-264ENST00000637985 IAH1Q2TAA2 248 aaPredicted RBP11.51□□□□□ -0.57
CLN3-264ENST00000637985 EBLN2Q6P2I7 272 aa11.51□□□□□ -0.57
CLN3-264ENST00000637985 TMEM14EPQ6UXP3 125 aa11.51□□□□□ -0.57
CLN3-264ENST00000637985 TMEM182Q6ZP80 229 aaPredicted RBP11.51□□□□□ -0.57
CLN3-264ENST00000637985 OR1B1Q8NGR6 318 aa11.51□□□□□ -0.57
CLN3-264ENST00000637985 ZNRF2Q8NHG8 242 aa11.51□□□□□ -0.57
CLN3-264ENST00000637985 C16orf92Q96LL3 132 aa11.51□□□□□ -0.57
CLN3-264ENST00000637985 NEU1Q99519 415 aa11.51□□□□□ -0.57
CLN3-264ENST00000637985 SLC25A22Q9H936 323 aa11.51□□□□□ -0.57
CLN3-264ENST00000637985 RPRMQ9NS64 109 aa11.51□□□□□ -0.57
CLN3-264ENST00000637985 SMCO3A2RU48 225 aa11.5□□□□□ -0.57
CLN3-264ENST00000637985 SMIM9A6NGZ8 99 aa11.5□□□□□ -0.57
CLN3-264ENST00000637985 IL5P05113 134 aa11.5□□□□□ -0.57
CLN3-264ENST00000637985 SELENOTP62341 195 aa11.5□□□□□ -0.57
CLN3-264ENST00000637985 DLK1P80370 383 aa11.5□□□□□ -0.57
CLN3-264ENST00000637985 Q5VSD8 79 aa11.5□□□□□ -0.57
CLN3-264ENST00000637985 ZNF705AQ6ZN79 300 aaPredicted RBP11.5□□□□□ -0.57
CLN3-264ENST00000637985 CYP2G1PQ6ZSU1 146 aa11.5□□□□□ -0.57
CLN3-264ENST00000637985 LYPD1Q8N2G4 141 aa11.5□□□□□ -0.57
CLN3-264ENST00000637985 ZBTB8BQ8NAP8 495 aaPredicted RBP11.5□□□□□ -0.57
CLN3-264ENST00000637985 OR4B1Q8NGF8 309 aa11.5□□□□□ -0.57
CLN3-264ENST00000637985 RSG1Q9BU20 258 aa11.5□□□□□ -0.57
CLN3-264ENST00000637985 TMEM189A5PLL7 270 aa11.49□□□□□ -0.57
CLN3-264ENST00000637985 ZNF705FA8MVS1 300 aaPredicted RBP11.49□□□□□ -0.57
CLN3-264ENST00000637985 PLA2G10O15496 165 aa11.49□□□□□ -0.57
CLN3-264ENST00000637985 LYRM1O43325 122 aa11.49□□□□□ -0.57
CLN3-264ENST00000637985 TSC22D2O75157 780 aa11.49□□□□□ -0.57
CLN3-264ENST00000637985 IGKV3-20P01619 116 aa11.49□□□□□ -0.57
CLN3-264ENST00000637985 ZNF705DP0CH99 300 aaPredicted RBP11.49□□□□□ -0.57
CLN3-264ENST00000637985 ZNF705BP0CI00 300 aaPredicted RBP11.49□□□□□ -0.57
CLN3-264ENST00000637985 DEFB1P60022 68 aa11.49□□□□□ -0.57
CLN3-264ENST00000637985 PLP1P60201 277 aa11.49□□□□□ -0.57
CLN3-264ENST00000637985 TMEM88Q6PEY1 159 aa11.49□□□□□ -0.57
CLN3-264ENST00000637985 S100A7AQ86SG5 101 aa11.49□□□□□ -0.57
CLN3-264ENST00000637985 ZNF709Q8N972 641 aa11.49□□□□□ -0.57
CLN3-264ENST00000637985 OR10P1Q8NGE3 313 aa11.49□□□□□ -0.57
CLN3-264ENST00000637985 C20orf85Q9H1P6 137 aa11.49□□□□□ -0.57
CLN3-264ENST00000637985 NPVFQ9HCQ7 196 aa11.49□□□□□ -0.57
CLN3-264ENST00000637985 DKK2Q9UBU2 259 aa11.49□□□□□ -0.57
CLN3-264ENST00000637985 A0A0J9YX75 114 aa11.48□□□□□ -0.57
CLN3-264ENST00000637985 HYPMO75409 117 aa11.48□□□□□ -0.57
CLN3-264ENST00000637985 SCGB1D2O95969 90 aa11.48□□□□□ -0.57
CLN3-264ENST00000637985 METTL15P1P0C7V9 234 aa11.48□□□□□ -0.57
CLN3-264ENST00000637985 HTN3P15516 51 aa11.48□□□□□ -0.57
CLN3-264ENST00000637985 EMP1P54849 157 aa11.48□□□□□ -0.57
CLN3-264ENST00000637985 RAP2BP61225 183 aa11.48□□□□□ -0.57
CLN3-264ENST00000637985 PSG9Q00887 426 aa11.48□□□□□ -0.57
CLN3-264ENST00000637985 FAM78BQ5VT40 261 aa11.48□□□□□ -0.57
CLN3-264ENST00000637985 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa11.48□□□□□ -0.57
CLN3-264ENST00000637985 C17orf77Q96MU5 243 aa11.48□□□□□ -0.57
CLN3-264ENST00000637985 NIPSNAP3BQ9BS92 247 aa11.48□□□□□ -0.57
CLN3-264ENST00000637985 SLC25A39Q9BZJ4 359 aaPredicted RBP11.48□□□□□ -0.57
CLN3-264ENST00000637985 GSKIPQ9P0R6 139 aa11.48□□□□□ -0.57
CLN3-264ENST00000637985 MGAT4CQ9UBM8 478 aa11.48□□□□□ -0.57
CLN3-264ENST00000637985 HIGD1AQ9Y241 93 aa11.48□□□□□ -0.57
CLN3-264ENST00000637985 H3BRN7 92 aa11.47□□□□□ -0.57
CLN3-264ENST00000637985 K7EPK0 472 aa11.47□□□□□ -0.57
CLN3-264ENST00000637985 CCNKO75909 580 aa11.47□□□□□ -0.57
CLN3-264ENST00000637985 TCRBP04435 133 aa11.47□□□□□ -0.57
CLN3-264ENST00000637985 RPL7P18124 248 aaKnown RBP11.47□□□□□ -0.57
CLN3-264ENST00000637985 FXYD7P58549 80 aa11.47□□□□□ -0.57
CLN3-264ENST00000637985 RRAS2P62070 204 aaPredicted RBP11.47□□□□□ -0.57
CLN3-264ENST00000637985 OXA1LQ15070 435 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms