RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 PRR14LQ5THK1 2151 aa3.21□□□□□ -1.9
SCN1A-214ENST00000637038 LY6G6DO95868 133 aa3.21□□□□□ -1.9
SCN1A-214ENST00000637038 LYZP61626 148 aa3.21□□□□□ -1.9
SCN1A-214ENST00000637038 PRSS8Q16651 343 aa3.21□□□□□ -1.9
SCN1A-214ENST00000637038 BPIFA4PQ86YQ2 179 aa3.21□□□□□ -1.9
SCN1A-214ENST00000637038 NHLRC2Q8NBF2 726 aa3.21□□□□□ -1.9
SCN1A-214ENST00000637038 C1orf159Q96HA4 380 aa3.21□□□□□ -1.9
SCN1A-214ENST00000637038 RAB1BQ9H0U4 201 aa3.21□□□□□ -1.9
SCN1A-214ENST00000637038 TRAV30A0A087WSZ9 112 aa3.21□□□□□ -1.9
SCN1A-214ENST00000637038 NBPF19A0A087WUL8 3843 aa3.21□□□□□ -1.9
SCN1A-214ENST00000637038 OR4C46A6NHA9 309 aa3.21□□□□□ -1.9
SCN1A-214ENST00000637038 CNIH1O95406 144 aa3.21□□□□□ -1.9
SCN1A-214ENST00000637038 HLA-DRB1P01911 266 aa3.21□□□□□ -1.9
SCN1A-214ENST00000637038 PYYP10082 97 aa3.21□□□□□ -1.9
SCN1A-214ENST00000637038 TSPOP30536 169 aa3.21□□□□□ -1.9
SCN1A-214ENST00000637038 CEACAM3P40198 252 aa3.21□□□□□ -1.9
SCN1A-214ENST00000637038 FAM201AQ5SY85 155 aa3.21□□□□□ -1.9
SCN1A-214ENST00000637038 MOB3BQ86TA1 216 aa3.21□□□□□ -1.9
SCN1A-214ENST00000637038 C8orf46Q8TAG6 207 aa3.21□□□□□ -1.9
SCN1A-214ENST00000637038 RPEQ96AT9 228 aa3.21□□□□□ -1.9
SCN1A-214ENST00000637038 OR8B2Q96RD0 313 aa3.21□□□□□ -1.9
SCN1A-214ENST00000637038 RNF5Q99942 180 aa3.21□□□□□ -1.9
SCN1A-214ENST00000637038 ALKBH7Q9BT30 221 aaPredicted RBP3.21□□□□□ -1.9
SCN1A-214ENST00000637038 C1RLQ9NZP8 487 aa3.21□□□□□ -1.9
SCN1A-214ENST00000637038 TP53TG3Q9ULZ0 132 aa3.21□□□□□ -1.9
SCN1A-214ENST00000637038 TRAV5A0A0B4J249 113 aa3.2□□□□□ -1.9
SCN1A-214ENST00000637038 IGKV1-16P04430 117 aa3.2□□□□□ -1.9
SCN1A-214ENST00000637038 ID1P41134 155 aa3.2□□□□□ -1.9
SCN1A-214ENST00000637038 REG1BP48304 166 aa3.2□□□□□ -1.9
SCN1A-214ENST00000637038 HINT1P49773 126 aaPredicted RBP3.2□□□□□ -1.9
SCN1A-214ENST00000637038 ATP5J2P56134 94 aa3.2□□□□□ -1.9
SCN1A-214ENST00000637038 RPS20P60866 119 aaKnown RBP3.2□□□□□ -1.9
SCN1A-214ENST00000637038 CCL8P80075 99 aa3.2□□□□□ -1.9
SCN1A-214ENST00000637038 LINC00528Q8N1L1 170 aa3.2□□□□□ -1.9
SCN1A-214ENST00000637038 FAM19A2Q8N3H0 131 aa3.2□□□□□ -1.9
SCN1A-214ENST00000637038 OR10W1Q8NGF6 305 aa3.2□□□□□ -1.9
SCN1A-214ENST00000637038 OR8B3Q8NGG8 313 aa3.2□□□□□ -1.9
SCN1A-214ENST00000637038 PRSS3P2Q8NHM4 247 aa3.2□□□□□ -1.9
SCN1A-214ENST00000637038 CCL17Q92583 94 aa3.2□□□□□ -1.9
SCN1A-214ENST00000637038 FAM167A-AS1Q96KT0 104 aa3.2□□□□□ -1.9
SCN1A-214ENST00000637038 PGLYRP4Q96LB8 373 aa3.2□□□□□ -1.9
SCN1A-214ENST00000637038 WNT10AQ9GZT5 417 aa3.2□□□□□ -1.9
SCN1A-214ENST00000637038 Q9H3A6 140 aa3.2□□□□□ -1.9
SCN1A-214ENST00000637038 INSIG2Q9Y5U4 225 aa3.2□□□□□ -1.9
SCN1A-214ENST00000637038 NBASA2RRP1 2371 aa3.2□□□□□ -1.9
SCN1A-214ENST00000637038 ADGRG4Q8IZF6 3080 aa3.2□□□□□ -1.9
SCN1A-214ENST00000637038 IGHV2-26A0A0B4J1V2 119 aa3.2□□□□□ -1.9
SCN1A-214ENST00000637038 A0A1B0GUT8 65 aa3.2□□□□□ -1.9
SCN1A-214ENST00000637038 SMAD7O15105 426 aaKnown RBP3.2□□□□□ -1.9
SCN1A-214ENST00000637038 TGFAP01135 160 aa3.2□□□□□ -1.9
SCN1A-214ENST00000637038 RBP4P02753 201 aa3.2□□□□□ -1.9
SCN1A-214ENST00000637038 TCRAP04437 139 aa3.2□□□□□ -1.9
SCN1A-214ENST00000637038 PVRIGQ6DKI7 326 aa3.2□□□□□ -1.9
SCN1A-214ENST00000637038 ZNF474Q6S9Z5 364 aaPredicted RBP3.2□□□□□ -1.9
SCN1A-214ENST00000637038 NIT1Q86X76 327 aa3.2□□□□□ -1.9
SCN1A-214ENST00000637038 LYPD1Q8N2G4 141 aa3.2□□□□□ -1.9
SCN1A-214ENST00000637038 OR10AG1Q8NH19 301 aa3.2□□□□□ -1.9
SCN1A-214ENST00000637038 FXYD5Q96DB9 178 aa3.2□□□□□ -1.9
SCN1A-214ENST00000637038 NDFIP1Q9BT67 221 aa3.2□□□□□ -1.9
SCN1A-214ENST00000637038 CLEC7AQ9BXN2 247 aa3.2□□□□□ -1.9
SCN1A-214ENST00000637038 TMEM14CQ9P0S9 112 aa3.2□□□□□ -1.9
SCN1A-214ENST00000637038 A6NDN8 102 aa3.2□□□□□ -1.9
SCN1A-214ENST00000637038 H0Y8G0 127 aa3.2□□□□□ -1.9
SCN1A-214ENST00000637038 C3orf84H3BNL1 204 aa3.2□□□□□ -1.9
SCN1A-214ENST00000637038 MYOD1P15172 320 aa3.2□□□□□ -1.9
SCN1A-214ENST00000637038 CD33P20138 364 aa3.2□□□□□ -1.9
SCN1A-214ENST00000637038 FBXL19-AS1Q494R0 122 aa3.2□□□□□ -1.9
SCN1A-214ENST00000637038 PRR31Q5SQ13 230 aa3.2□□□□□ -1.9
SCN1A-214ENST00000637038 TMEM200BQ69YZ2 307 aa3.2□□□□□ -1.9
SCN1A-214ENST00000637038 CIARTQ8N365 385 aaPredicted RBP3.2□□□□□ -1.9
SCN1A-214ENST00000637038 ZNF503Q96F45 646 aa3.2□□□□□ -1.9
SCN1A-214ENST00000637038 CITED2Q99967 270 aaPredicted RBP3.2□□□□□ -1.9
SCN1A-214ENST00000637038 FAM110AQ9BQ89 295 aa3.2□□□□□ -1.9
SCN1A-214ENST00000637038 KLF12Q9Y4X4 402 aa3.2□□□□□ -1.9
SCN1A-214ENST00000637038 TRBV6-1A0A0K0K1D8 114 aa3.19□□□□□ -1.9
SCN1A-214ENST00000637038 SRRM4A7MD48 611 aaKnown RBP3.19□□□□□ -1.9
SCN1A-214ENST00000637038 F2Z2F3 143 aa3.19□□□□□ -1.9
SCN1A-214ENST00000637038 TMEM178BH3BS89 294 aa3.19□□□□□ -1.9
SCN1A-214ENST00000637038 MOSP00540 346 aa3.19□□□□□ -1.9
SCN1A-214ENST00000637038 CA1P00915 261 aaPredicted RBP3.19□□□□□ -1.9
SCN1A-214ENST00000637038 IGLV2-8P01709 118 aa3.19□□□□□ -1.9
SCN1A-214ENST00000637038 AKAP13Q12802 2813 aa3.19□□□□□ -1.9
SCN1A-214ENST00000637038 PRNTQ86SH4 94 aa3.19□□□□□ -1.9
SCN1A-214ENST00000637038 TIMD4Q96H15 378 aa3.19□□□□□ -1.9
SCN1A-214ENST00000637038 CITED1Q99966 193 aa3.19□□□□□ -1.9
SCN1A-214ENST00000637038 TMEM133Q9H2Q1 129 aa3.19□□□□□ -1.9
SCN1A-214ENST00000637038 AP5S1Q9NUS5 200 aa3.19□□□□□ -1.9
SCN1A-214ENST00000637038 THYN1Q9P016 225 aa3.19□□□□□ -1.9
SCN1A-214ENST00000637038 DSCAMO60469 2012 aa3.19□□□□□ -1.9
SCN1A-214ENST00000637038 WIPF1O43516 503 aa3.19□□□□□ -1.9
SCN1A-214ENST00000637038 PLAUP00749 431 aa3.19□□□□□ -1.9
SCN1A-214ENST00000637038 CCL3L1P16619 93 aa3.19□□□□□ -1.9
SCN1A-214ENST00000637038 COL8A2P25067 703 aa3.19□□□□□ -1.9
SCN1A-214ENST00000637038 CTRLP40313 264 aa3.19□□□□□ -1.9
SCN1A-214ENST00000637038 PLP1P60201 277 aa3.19□□□□□ -1.9
SCN1A-214ENST00000637038 GNG5P63218 68 aa3.19□□□□□ -1.9
SCN1A-214ENST00000637038 PSG9Q00887 426 aa3.19□□□□□ -1.9
SCN1A-214ENST00000637038 PAX2Q02962 417 aa3.19□□□□□ -1.9
SCN1A-214ENST00000637038 UBE2V1Q13404 147 aa3.19□□□□□ -1.9
SCN1A-214ENST00000637038 HCP5Q6MZN7 132 aa3.19□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms