RNA–Protein interactions for RNA: ENST00000636759.1

SCN1A-213, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 3,606 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-213ENST00000636759 C10orf126Q8N4M7 172 aa5.51□□□□□ -1.53
SCN1A-213ENST00000636759 MRPL32Q9BYC8 188 aaKnown RBP5.51□□□□□ -1.53
SCN1A-213ENST00000636759 FSCN3Q9NQT6 498 aa5.51□□□□□ -1.53
SCN1A-213ENST00000636759 A0A1W2PPI3 338 aa5.51□□□□□ -1.53
SCN1A-213ENST00000636759 SCRG1O75711 98 aa5.51□□□□□ -1.53
SCN1A-213ENST00000636759 LINC00694P0DN24 101 aa5.51□□□□□ -1.53
SCN1A-213ENST00000636759 KIR2DS2P43631 304 aa5.51□□□□□ -1.53
SCN1A-213ENST00000636759 FAM27BQ5VT28 67 aa5.51□□□□□ -1.53
SCN1A-213ENST00000636759 MOB3BQ86TA1 216 aa5.51□□□□□ -1.53
SCN1A-213ENST00000636759 WDR31Q8NA23 367 aa5.51□□□□□ -1.53
SCN1A-213ENST00000636759 MAFAQ8NHW3 353 aaPredicted RBP5.51□□□□□ -1.53
SCN1A-213ENST00000636759 GFRA4Q9GZZ7 299 aa5.51□□□□□ -1.53
SCN1A-213ENST00000636759 IGKV2D-26A0A0A0MRZ7 120 aa5.5□□□□□ -1.53
SCN1A-213ENST00000636759 IGHV3-20A0A0C4DH32 117 aa5.5□□□□□ -1.53
SCN1A-213ENST00000636759 IGKCP01834 107 aa5.5□□□□□ -1.53
SCN1A-213ENST00000636759 ZNF32P17041 273 aa5.5□□□□□ -1.53
SCN1A-213ENST00000636759 COL8A2P25067 703 aa5.5□□□□□ -1.53
SCN1A-213ENST00000636759 FXYD7P58549 80 aa5.5□□□□□ -1.53
SCN1A-213ENST00000636759 PRR20EP86478 221 aa5.5□□□□□ -1.53
SCN1A-213ENST00000636759 PRR20CP86479 221 aa5.5□□□□□ -1.53
SCN1A-213ENST00000636759 PRR20DP86480 221 aa5.5□□□□□ -1.53
SCN1A-213ENST00000636759 PRR20BP86481 221 aa5.5□□□□□ -1.53
SCN1A-213ENST00000636759 PRR20AP86496 221 aa5.5□□□□□ -1.53
SCN1A-213ENST00000636759 ZC2HC1BQ5TFG8 222 aa5.5□□□□□ -1.53
SCN1A-213ENST00000636759 C1orf210Q8IVY1 113 aa5.5□□□□□ -1.53
SCN1A-213ENST00000636759 SPRY4Q9C004 299 aa5.5□□□□□ -1.53
SCN1A-213ENST00000636759 USF3Q68DE3 2245 aa5.5□□□□□ -1.53
SCN1A-213ENST00000636759 TRAV24A0A0B4J272 114 aa5.5□□□□□ -1.53
SCN1A-213ENST00000636759 C9JAW5 83 aa5.5□□□□□ -1.53
SCN1A-213ENST00000636759 F5H768 121 aa5.5□□□□□ -1.53
SCN1A-213ENST00000636759 LAMA5O15230 3695 aa5.5□□□□□ -1.53
SCN1A-213ENST00000636759 RPL7P18124 248 aaKnown RBP5.5□□□□□ -1.53
SCN1A-213ENST00000636759 C9orf153Q5TBE3 101 aa5.5□□□□□ -1.53
SCN1A-213ENST00000636759 ANKRD29Q8N6D5 301 aa5.5□□□□□ -1.53
SCN1A-213ENST00000636759 OR1L4Q8NGR5 311 aa5.5□□□□□ -1.53
SCN1A-213ENST00000636759 RND1Q92730 232 aa5.5□□□□□ -1.53
SCN1A-213ENST00000636759 COQ2Q96H96 371 aa5.5□□□□□ -1.53
SCN1A-213ENST00000636759 ZNF488Q96MN9 340 aa5.5□□□□□ -1.53
SCN1A-213ENST00000636759 PAXXQ9BUH6 204 aa5.5□□□□□ -1.53
SCN1A-213ENST00000636759 ONECUT1Q9UBC0 465 aa5.5□□□□□ -1.53
SCN1A-213ENST00000636759 EPDR1Q9UM22 224 aa5.5□□□□□ -1.53
SCN1A-213ENST00000636759 HIGD1AQ9Y241 93 aa5.5□□□□□ -1.53
SCN1A-213ENST00000636759 NCBP2LA6PVI3 153 aaKnown RBP5.5□□□□□ -1.53
SCN1A-213ENST00000636759 HAX1O00165 279 aa5.5□□□□□ -1.53
SCN1A-213ENST00000636759 SYNGR3O43761 229 aa5.5□□□□□ -1.53
SCN1A-213ENST00000636759 GFRA3O60609 400 aa5.5□□□□□ -1.53
SCN1A-213ENST00000636759 PATE4P0C8F1 98 aa5.5□□□□□ -1.53
SCN1A-213ENST00000636759 B4GALT1P15291 398 aa5.5□□□□□ -1.53
SCN1A-213ENST00000636759 IL11RAQ14626 422 aa5.5□□□□□ -1.53
SCN1A-213ENST00000636759 TWIST1Q15672 202 aa5.5□□□□□ -1.53
SCN1A-213ENST00000636759 FAM19A5Q7Z5A7 132 aaPredicted RBP5.5□□□□□ -1.53
SCN1A-213ENST00000636759 PIP4P2Q8N4L2 257 aa5.5□□□□□ -1.53
SCN1A-213ENST00000636759 C15orf53Q8NAA6 179 aa5.5□□□□□ -1.53
SCN1A-213ENST00000636759 PIFOQ8TCI5 191 aa5.5□□□□□ -1.53
SCN1A-213ENST00000636759 SLC25A2Q9BXI2 301 aa5.5□□□□□ -1.53
SCN1A-213ENST00000636759 OCIAD1Q9NX40 245 aa5.5□□□□□ -1.53
SCN1A-213ENST00000636759 LOC107984640A0A0U1RRK4 108 aa5.49□□□□□ -1.53
SCN1A-213ENST00000636759 SHISA9B4DS77 424 aa5.49□□□□□ -1.53
SCN1A-213ENST00000636759 C16orf97H3BN30 126 aa5.49□□□□□ -1.53
SCN1A-213ENST00000636759 HES3Q5TGS1 186 aa5.49□□□□□ -1.53
SCN1A-213ENST00000636759 FGFBP3Q8TAT2 258 aa5.49□□□□□ -1.53
SCN1A-213ENST00000636759 ZNF503Q96F45 646 aa5.49□□□□□ -1.53
SCN1A-213ENST00000636759 FZR1Q9UM11 496 aa5.49□□□□□ -1.53
SCN1A-213ENST00000636759 SIGLEC9Q9Y336 463 aa5.49□□□□□ -1.53
SCN1A-213ENST00000636759 CACNA1EQ15878 2313 aa5.49□□□□□ -1.53
SCN1A-213ENST00000636759 KNL1Q8NG31 2342 aa5.49□□□□□ -1.53
SCN1A-213ENST00000636759 LINC01549A6NIU2 74 aa5.49□□□□□ -1.53
SCN1A-213ENST00000636759 NPFFO15130 113 aa5.49□□□□□ -1.53
SCN1A-213ENST00000636759 FCGR3BO75015 233 aa5.49□□□□□ -1.53
SCN1A-213ENST00000636759 NDUFS7O75251 213 aa5.49□□□□□ -1.53
SCN1A-213ENST00000636759 DPM2O94777 84 aa5.49□□□□□ -1.53
SCN1A-213ENST00000636759 GNG5P63218 68 aa5.49□□□□□ -1.53
SCN1A-213ENST00000636759 LOXL1Q08397 574 aaPredicted RBP5.49□□□□□ -1.53
SCN1A-213ENST00000636759 Q6P435 159 aa5.49□□□□□ -1.53
SCN1A-213ENST00000636759 SLC25A48Q6ZT89 311 aaKnown RBP5.49□□□□□ -1.53
SCN1A-213ENST00000636759 PIP4P1Q86T03 277 aa5.49□□□□□ -1.53
SCN1A-213ENST00000636759 LRRC75A-AS1Q8N1F1 130 aa5.49□□□□□ -1.53
SCN1A-213ENST00000636759 COX7A2P2O60397 106 aa5.49□□□□□ -1.53
SCN1A-213ENST00000636759 PCBD1P61457 104 aa5.49□□□□□ -1.53
SCN1A-213ENST00000636759 PCOLCEQ15113 449 aa5.49□□□□□ -1.53
SCN1A-213ENST00000636759 PDPNQ86YL7 162 aa5.49□□□□□ -1.53
SCN1A-213ENST00000636759 TMEM158Q8WZ71 300 aa5.49□□□□□ -1.53
SCN1A-213ENST00000636759 PLPPR2Q96GM1 343 aa5.49□□□□□ -1.53
SCN1A-213ENST00000636759 CHCHD2Q9Y6H1 151 aaPredicted RBP5.49□□□□□ -1.53
SCN1A-213ENST00000636759 TRAV8-4A0A0B4J246 113 aa5.48□□□□□ -1.53
SCN1A-213ENST00000636759 MYMXA0A1B0GTQ4 84 aa5.48□□□□□ -1.53
SCN1A-213ENST00000636759 TMEM213A2RRL7 107 aa5.48□□□□□ -1.53
SCN1A-213ENST00000636759 SP1P08047 785 aa5.48□□□□□ -1.53
SCN1A-213ENST00000636759 ZNF329Q86UD4 541 aa5.48□□□□□ -1.53
SCN1A-213ENST00000636759 RASL10AQ92737 203 aa5.48□□□□□ -1.53
SCN1A-213ENST00000636759 TMEM160Q9NX00 188 aa5.48□□□□□ -1.53
SCN1A-213ENST00000636759 MDFICQ9P1T7 246 aa5.48□□□□□ -1.53
SCN1A-213ENST00000636759 PI4KAP42356 2102 aa5.48□□□□□ -1.53
SCN1A-213ENST00000636759 IGHV1-45A0A0A0MS14 117 aa5.48□□□□□ -1.53
SCN1A-213ENST00000636759 CRLF1O75462 422 aa5.48□□□□□ -1.53
SCN1A-213ENST00000636759 ZNF474Q6S9Z5 364 aaPredicted RBP5.48□□□□□ -1.53
SCN1A-213ENST00000636759 Q6ZQT7 251 aa5.48□□□□□ -1.53
SCN1A-213ENST00000636759 ORMDL3Q8N138 153 aa5.48□□□□□ -1.53
SCN1A-213ENST00000636759 IMMP1LQ96LU5 166 aa5.48□□□□□ -1.53
SCN1A-213ENST00000636759 PRADC1Q9BSG0 188 aa5.48□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms