RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 GGCTO75223 188 aaKnown RBP8.17□□□□□ -1.1
CLN3-248ENST00000636355 EIF3GO75821 320 aaKnown RBP eCLIP8.17□□□□□ -1.1
CLN3-248ENST00000636355 IGHV3-23P01764 117 aa8.17□□□□□ -1.1
CLN3-248ENST00000636355 NBEAP1P0C6P0 100 aa8.17□□□□□ -1.1
CLN3-248ENST00000636355 IGLC2P0DOY2 106 aa8.17□□□□□ -1.1
CLN3-248ENST00000636355 PYYP10082 97 aa8.17□□□□□ -1.1
CLN3-248ENST00000636355 CRYBB3P26998 211 aa8.17□□□□□ -1.1
CLN3-248ENST00000636355 AWAT1Q58HT5 328 aa8.17□□□□□ -1.1
CLN3-248ENST00000636355 TOMM20LQ6UXN7 152 aa8.17□□□□□ -1.1
CLN3-248ENST00000636355 SMIM12Q96EX1 92 aa8.17□□□□□ -1.1
CLN3-248ENST00000636355 ZNF414Q96IQ9 312 aa8.17□□□□□ -1.1
CLN3-248ENST00000636355 UBE2E2Q96LR5 201 aa8.17□□□□□ -1.1
CLN3-248ENST00000636355 OTORQ9NRC9 128 aa8.17□□□□□ -1.1
CLN3-248ENST00000636355 SERTAD4Q9NUC0 356 aa8.17□□□□□ -1.1
CLN3-248ENST00000636355 SVEP1Q4LDE5 3571 aa8.17□□□□□ -1.1
CLN3-248ENST00000636355 ZNF469Q96JG9 3925 aaPredicted RBP8.16□□□□□ -1.1
CLN3-248ENST00000636355 TRAV5A0A0B4J249 113 aa8.16□□□□□ -1.1
CLN3-248ENST00000636355 SERTM2A0A1B0GWG4 89 aa8.16□□□□□ -1.1
CLN3-248ENST00000636355 SCO2A0A1W2PP80 73 aa8.16□□□□□ -1.1
CLN3-248ENST00000636355 MRPS12O15235 138 aaKnown RBP8.16□□□□□ -1.1
CLN3-248ENST00000636355 S100A9P06702 114 aaKnown RBP8.16□□□□□ -1.1
CLN3-248ENST00000636355 LGALS1P09382 135 aaKnown RBP8.16□□□□□ -1.1
CLN3-248ENST00000636355 CD99P14209 185 aa8.16□□□□□ -1.1
CLN3-248ENST00000636355 BMI1P35226 326 aa8.16□□□□□ -1.1
CLN3-248ENST00000636355 TMEM241Q24JQ0 296 aa8.16□□□□□ -1.1
CLN3-248ENST00000636355 TMEM95Q3KNT9 176 aa8.16□□□□□ -1.1
CLN3-248ENST00000636355 OR4X2Q8NGF9 303 aa8.16□□□□□ -1.1
CLN3-248ENST00000636355 C2CD4CQ8TF44 421 aa8.16□□□□□ -1.1
CLN3-248ENST00000636355 ELOVL1Q9BW60 279 aa8.16□□□□□ -1.1
CLN3-248ENST00000636355 C16orf95Q9H693 158 aa8.16□□□□□ -1.1
CLN3-248ENST00000636355 GNB4Q9HAV0 340 aa8.16□□□□□ -1.1
CLN3-248ENST00000636355 SDF2L1Q9HCN8 221 aa8.16□□□□□ -1.1
CLN3-248ENST00000636355 U3KQE9 123 aa8.16□□□□□ -1.1
CLN3-248ENST00000636355 TRBV19A0A075B6N1 114 aa8.15□□□□□ -1.1
CLN3-248ENST00000636355 FBLL1A6NHQ2 334 aaKnown RBP8.15□□□□□ -1.1
CLN3-248ENST00000636355 M0R036 132 aa8.15□□□□□ -1.1
CLN3-248ENST00000636355 NDUFA7O95182 113 aa8.15□□□□□ -1.1
CLN3-248ENST00000636355 LY6G6DO95868 133 aa8.15□□□□□ -1.1
CLN3-248ENST00000636355 CRYBA1P05813 215 aa8.15□□□□□ -1.1
CLN3-248ENST00000636355 NPPCP23582 126 aa8.15□□□□□ -1.1
CLN3-248ENST00000636355 GALR1P47211 349 aa8.15□□□□□ -1.1
CLN3-248ENST00000636355 CEBPGP53567 150 aa8.15□□□□□ -1.1
CLN3-248ENST00000636355 PSG9Q00887 426 aa8.15□□□□□ -1.1
CLN3-248ENST00000636355 SAMD13Q5VXD3 122 aa8.15□□□□□ -1.1
CLN3-248ENST00000636355 ZNF329Q86UD4 541 aa8.15□□□□□ -1.1
CLN3-248ENST00000636355 GRAMD2BQ96HH9 432 aa8.15□□□□□ -1.1
CLN3-248ENST00000636355 ATG101Q9BSB4 218 aa8.15□□□□□ -1.1
CLN3-248ENST00000636355 KLK15Q9H2R5 256 aa8.15□□□□□ -1.1
CLN3-248ENST00000636355 TUBA4BQ9H853 241 aa8.15□□□□□ -1.1
CLN3-248ENST00000636355 DAZ1Q9NQZ3 744 aaKnown RBP8.15□□□□□ -1.1
CLN3-248ENST00000636355 TMEM242Q9NWH2 141 aa8.15□□□□□ -1.1
CLN3-248ENST00000636355 CLEC5AQ9NY25 188 aa8.15□□□□□ -1.1
CLN3-248ENST00000636355 PEF1Q9UBV8 284 aaKnown RBP8.15□□□□□ -1.1
CLN3-248ENST00000636355 A0A1W2PS18 150 aa8.14□□□□□ -1.11
CLN3-248ENST00000636355 CLPSL1A2RUU4 121 aa8.14□□□□□ -1.11
CLN3-248ENST00000636355 CXorf65A6NEN9 183 aa8.14□□□□□ -1.11
CLN3-248ENST00000636355 FAM181BA6NEQ2 426 aa8.14□□□□□ -1.11
CLN3-248ENST00000636355 A8MWP6 167 aa8.14□□□□□ -1.11
CLN3-248ENST00000636355 K7EMT4 169 aa8.14□□□□□ -1.11
CLN3-248ENST00000636355 PEX7O00628 323 aa8.14□□□□□ -1.11
CLN3-248ENST00000636355 TSPAN4O14817 238 aa8.14□□□□□ -1.11
CLN3-248ENST00000636355 BUB3O43684 328 aa8.14□□□□□ -1.11
CLN3-248ENST00000636355 NDUFB4O95168 129 aa8.14□□□□□ -1.11
CLN3-248ENST00000636355 CNN1P51911 297 aaKnown RBP8.14□□□□□ -1.11
CLN3-248ENST00000636355 TAS2R60P59551 318 aa8.14□□□□□ -1.11
CLN3-248ENST00000636355 KIAA0141Q14154 515 aaPredicted RBP8.14□□□□□ -1.11
CLN3-248ENST00000636355 LEMD1Q68G75 181 aa8.14□□□□□ -1.11
CLN3-248ENST00000636355 GPHB5Q86YW7 130 aa8.14□□□□□ -1.11
CLN3-248ENST00000636355 OR8I2Q8N0Y5 310 aa8.14□□□□□ -1.11
CLN3-248ENST00000636355 WIPF2Q8TF74 440 aaPredicted RBP8.14□□□□□ -1.11
CLN3-248ENST00000636355 C4orf3Q8WVX3 66 aa8.14□□□□□ -1.11
CLN3-248ENST00000636355 SLC50A1Q9BRV3 221 aa8.14□□□□□ -1.11
CLN3-248ENST00000636355 CTDSP1Q9GZU7 261 aa8.14□□□□□ -1.11
CLN3-248ENST00000636355 Q9H3A6 140 aa8.14□□□□□ -1.11
CLN3-248ENST00000636355 AAMDCQ9H7C9 122 aa8.14□□□□□ -1.11
CLN3-248ENST00000636355 ESM1Q9NQ30 184 aa8.14□□□□□ -1.11
CLN3-248ENST00000636355 SMCO4Q9NRQ5 59 aa8.14□□□□□ -1.11
CLN3-248ENST00000636355 TRBV6-1A0A0K0K1D8 114 aa8.13□□□□□ -1.11
CLN3-248ENST00000636355 C7orf77A4D0Y5 90 aa8.13□□□□□ -1.11
CLN3-248ENST00000636355 PPP5D1E7EU14 171 aa8.13□□□□□ -1.11
CLN3-248ENST00000636355 LGALS9O00182 355 aa8.13□□□□□ -1.11
CLN3-248ENST00000636355 ATF4P18848 351 aaPredicted RBP8.13□□□□□ -1.11
CLN3-248ENST00000636355 AKR1C3P42330 323 aa8.13□□□□□ -1.11
CLN3-248ENST00000636355 RPL35P42766 123 aaKnown RBP8.13□□□□□ -1.11
CLN3-248ENST00000636355 CDX1P47902 265 aaPredicted RBP8.13□□□□□ -1.11
CLN3-248ENST00000636355 SUMO1P63165 101 aaKnown RBP8.13□□□□□ -1.11
CLN3-248ENST00000636355 ZNF674Q2M3X9 581 aa8.13□□□□□ -1.11
CLN3-248ENST00000636355 FAM106AQ4KMX7 169 aa8.13□□□□□ -1.11
CLN3-248ENST00000636355 SIGLEC15Q6ZMC9 328 aa8.13□□□□□ -1.11
CLN3-248ENST00000636355 Q6ZSV7 163 aa8.13□□□□□ -1.11
CLN3-248ENST00000636355 REC114Q7Z4M0 266 aa8.13□□□□□ -1.11
CLN3-248ENST00000636355 KLHDC1Q8N7A1 406 aa8.13□□□□□ -1.11
CLN3-248ENST00000636355 MRPL53Q96EL3 112 aaKnown RBP8.13□□□□□ -1.11
CLN3-248ENST00000636355 FMC1Q96HJ9 113 aa8.13□□□□□ -1.11
CLN3-248ENST00000636355 ZNF586Q9NXT0 402 aa8.13□□□□□ -1.11
CLN3-248ENST00000636355 UFC1Q9Y3C8 167 aa8.13□□□□□ -1.11
CLN3-248ENST00000636355 KLF12Q9Y4X4 402 aa8.13□□□□□ -1.11
CLN3-248ENST00000636355 K7EQM0 130 aa8.12□□□□□ -1.11
CLN3-248ENST00000636355 PPP1R2P9O14990 202 aa8.12□□□□□ -1.11
CLN3-248ENST00000636355 MT-ND4LP03901 98 aa8.12□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms