RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 SPANXN5Q5MJ07 72 aa11.42□□□□□ -0.58
CLN3-246ENST00000636228 GGNBP1Q5YKI7 109 aa11.42□□□□□ -0.58
CLN3-246ENST00000636228 ZNF575Q86XF7 245 aa11.42□□□□□ -0.58
CLN3-246ENST00000636228 OR1B1Q8NGR6 318 aa11.42□□□□□ -0.58
CLN3-246ENST00000636228 IGF2BP2-AS1Q96M15 143 aa11.42□□□□□ -0.58
CLN3-246ENST00000636228 TRAV8-2A0A0B4J237 113 aa11.41□□□□□ -0.58
CLN3-246ENST00000636228 SYNGR2O43760 224 aa11.41□□□□□ -0.58
CLN3-246ENST00000636228 MED6O75586 246 aa11.41□□□□□ -0.58
CLN3-246ENST00000636228 S100A5P33763 92 aa11.41□□□□□ -0.58
CLN3-246ENST00000636228 CNN1P51911 297 aaKnown RBP11.41□□□□□ -0.58
CLN3-246ENST00000636228 RNF212Q495C1 297 aa11.41□□□□□ -0.58
CLN3-246ENST00000636228 CCDC190Q86UF4 302 aa11.41□□□□□ -0.58
CLN3-246ENST00000636228 TOMM5Q8N4H5 51 aa11.41□□□□□ -0.58
CLN3-246ENST00000636228 LRTM2Q8N967 370 aa11.41□□□□□ -0.58
CLN3-246ENST00000636228 BPIFCQ8NFQ6 507 aa11.41□□□□□ -0.58
CLN3-246ENST00000636228 TRIM63Q969Q1 353 aa11.41□□□□□ -0.58
CLN3-246ENST00000636228 TRAV12-2A0A075B6T6 113 aa11.4□□□□□ -0.58
CLN3-246ENST00000636228 A8MTW9 85 aa11.4□□□□□ -0.58
CLN3-246ENST00000636228 CRXO43186 299 aaPredicted RBP11.4□□□□□ -0.58
CLN3-246ENST00000636228 SFT2D2O95562 160 aa11.4□□□□□ -0.58
CLN3-246ENST00000636228 CFDP00746 253 aaPredicted RBP11.4□□□□□ -0.58
CLN3-246ENST00000636228 SLC25A6P12236 298 aa11.4□□□□□ -0.58
CLN3-246ENST00000636228 AZU1P20160 251 aa11.4□□□□□ -0.58
CLN3-246ENST00000636228 FAUP35544 74 aaKnown RBP11.4□□□□□ -0.58
CLN3-246ENST00000636228 AKR1C1Q04828 323 aa11.4□□□□□ -0.58
CLN3-246ENST00000636228 PPP1R1AQ13522 171 aa11.4□□□□□ -0.58
CLN3-246ENST00000636228 FCN2Q15485 313 aa11.4□□□□□ -0.58
CLN3-246ENST00000636228 SAMD13Q5VXD3 122 aa11.4□□□□□ -0.58
CLN3-246ENST00000636228 OR11H7Q8NGC8 314 aa11.4□□□□□ -0.58
CLN3-246ENST00000636228 CIB3Q96Q77 187 aaPredicted RBP11.4□□□□□ -0.58
CLN3-246ENST00000636228 TMEM147Q9BVK8 224 aa11.4□□□□□ -0.58
CLN3-246ENST00000636228 DEFB130BP0DP73 79 aa11.39□□□□□ -0.59
CLN3-246ENST00000636228 DEFB130AP0DP74 79 aa11.39□□□□□ -0.59
CLN3-246ENST00000636228 RPP30P78346 268 aaKnown RBP11.39□□□□□ -0.59
CLN3-246ENST00000636228 LINC00299Q6ZSB3 139 aa11.39□□□□□ -0.59
CLN3-246ENST00000636228 ACOT7LQ6ZUV0 252 aa11.39□□□□□ -0.59
CLN3-246ENST00000636228 BAP18Q8IXM2 172 aa11.39□□□□□ -0.59
CLN3-246ENST00000636228 SLC25A39Q9BZJ4 359 aaPredicted RBP11.39□□□□□ -0.59
CLN3-246ENST00000636228 SLC45A2Q9UMX9 530 aa11.39□□□□□ -0.59
CLN3-246ENST00000636228 TMED3Q9Y3Q3 217 aa11.39□□□□□ -0.59
CLN3-246ENST00000636228 V9GYH0 126 aa11.39□□□□□ -0.59
CLN3-246ENST00000636228 SMCO3A2RU48 225 aa11.38□□□□□ -0.59
CLN3-246ENST00000636228 C1orf134Q5TEV5 83 aa11.38□□□□□ -0.59
CLN3-246ENST00000636228 OR4D5Q8NGN0 318 aa11.38□□□□□ -0.59
CLN3-246ENST00000636228 STRAPQ9Y3F4 350 aaKnown RBP11.38□□□□□ -0.59
CLN3-246ENST00000636228 PIGBOS1A0A0B4J2F0 54 aa11.37□□□□□ -0.59
CLN3-246ENST00000636228 ADAP1O75689 374 aa11.37□□□□□ -0.59
CLN3-246ENST00000636228 DUSP14O95147 198 aaKnown RBP11.37□□□□□ -0.59
CLN3-246ENST00000636228 INSP01308 110 aa11.37□□□□□ -0.59
CLN3-246ENST00000636228 AP3S2P59780 193 aa11.37□□□□□ -0.59
CLN3-246ENST00000636228 POLR2GP62487 172 aaKnown RBP eCLIP11.37□□□□□ -0.59
CLN3-246ENST00000636228 SOHLH1Q5JUK2 328 aa11.37□□□□□ -0.59
CLN3-246ENST00000636228 CYP2G1PQ6ZSU1 146 aa11.37□□□□□ -0.59
CLN3-246ENST00000636228 ZNF738Q8NE65 137 aa11.37□□□□□ -0.59
CLN3-246ENST00000636228 KRTAP4-5Q9BYR2 181 aa11.37□□□□□ -0.59
CLN3-246ENST00000636228 F5H768 121 aa11.36□□□□□ -0.59
CLN3-246ENST00000636228 H3BRN7 92 aa11.36□□□□□ -0.59
CLN3-246ENST00000636228 CCNKO75909 580 aa11.36□□□□□ -0.59
CLN3-246ENST00000636228 IL5P05113 134 aa11.36□□□□□ -0.59
CLN3-246ENST00000636228 HTN1P15515 57 aa11.36□□□□□ -0.59
CLN3-246ENST00000636228 SPANXN2Q5MJ10 180 aa11.36□□□□□ -0.59
CLN3-246ENST00000636228 GPR82Q96P67 336 aa11.36□□□□□ -0.59
CLN3-246ENST00000636228 UHRF2Q96PU4 802 aa11.36□□□□□ -0.59
CLN3-246ENST00000636228 SLC25A21Q9BQT8 299 aaPredicted RBP11.36□□□□□ -0.59
CLN3-246ENST00000636228 ATG101Q9BSB4 218 aa11.36□□□□□ -0.59
CLN3-246ENST00000636228 SHANK2-AS3Q9BTD1 123 aa11.36□□□□□ -0.59
CLN3-246ENST00000636228 PLAC8L1A1L4L8 177 aa11.35□□□□□ -0.59
CLN3-246ENST00000636228 LYRM9A8MSI8 78 aa11.35□□□□□ -0.59
CLN3-246ENST00000636228 NUDT3O95989 172 aa11.35□□□□□ -0.59
CLN3-246ENST00000636228 SNRPCP09234 159 aaKnown RBP11.35□□□□□ -0.59
CLN3-246ENST00000636228 OR5G3P0C626 314 aa11.35□□□□□ -0.59
CLN3-246ENST00000636228 RRAS2P62070 204 aaPredicted RBP11.35□□□□□ -0.59
CLN3-246ENST00000636228 RHOBP62745 196 aa11.35□□□□□ -0.59
CLN3-246ENST00000636228 HIST1H1AQ02539 215 aaPredicted RBP11.35□□□□□ -0.59
CLN3-246ENST00000636228 TMEM144Q7Z5S9 345 aa11.35□□□□□ -0.59
CLN3-246ENST00000636228 C15orf53Q8NAA6 179 aa11.35□□□□□ -0.59
CLN3-246ENST00000636228 LINC01587Q99440 93 aa11.35□□□□□ -0.59
CLN3-246ENST00000636228 PSENENQ9NZ42 101 aa11.35□□□□□ -0.59
CLN3-246ENST00000636228 HIGD1AQ9Y241 93 aa11.35□□□□□ -0.59
CLN3-246ENST00000636228 HYPMO75409 117 aa11.34□□□□□ -0.59
CLN3-246ENST00000636228 RAP2BP61225 183 aa11.34□□□□□ -0.59
CLN3-246ENST00000636228 ID3Q02535 119 aa11.34□□□□□ -0.59
CLN3-246ENST00000636228 TNP2Q05952 138 aa11.34□□□□□ -0.59
CLN3-246ENST00000636228 PMS2P5A8MQ11 134 aa11.33□□□□□ -0.6
CLN3-246ENST00000636228 BOLA2-SMG1P6H3BVE0 249 aa11.33□□□□□ -0.6
CLN3-246ENST00000636228 SSSCA1O60232 199 aa11.33□□□□□ -0.6
CLN3-246ENST00000636228 LINC00869P0C866 280 aa11.33□□□□□ -0.6
CLN3-246ENST00000636228 CXCL3P19876 107 aa11.33□□□□□ -0.6
CLN3-246ENST00000636228 PATE2Q6UY27 113 aa11.33□□□□□ -0.6
CLN3-246ENST00000636228 OR8A1Q8NGG7 326 aa11.33□□□□□ -0.6
CLN3-246ENST00000636228 LRRC20Q8TCA0 184 aa11.33□□□□□ -0.6
CLN3-246ENST00000636228 SRRQ9GZT4 340 aa11.33□□□□□ -0.6
CLN3-246ENST00000636228 PPP1R14DQ9NXH3 145 aa11.33□□□□□ -0.6
CLN3-246ENST00000636228 FLVCR2Q9UPI3 526 aa11.33□□□□□ -0.6
CLN3-246ENST00000636228 C9orf170A2RU37 121 aa11.32□□□□□ -0.6
CLN3-246ENST00000636228 RPL7P18124 248 aaKnown RBP11.32□□□□□ -0.6
CLN3-246ENST00000636228 S100A7P31151 101 aa11.32□□□□□ -0.6
CLN3-246ENST00000636228 PSG3Q16557 428 aa11.32□□□□□ -0.6
CLN3-246ENST00000636228 ZNRF2Q8NHG8 242 aa11.32□□□□□ -0.6
CLN3-246ENST00000636228 ARL6Q9H0F7 186 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms