RNA–Protein interactions for RNA: ENST00000635893.1

SCN1A-211, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 168 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-211ENST00000635893 LAMA3Q16787 3333 aa-1.29□□□□□ -2.62
SCN1A-211ENST00000635893 PKDREJQ9NTG1 2253 aa-1.29□□□□□ -2.62
SCN1A-211ENST00000635893 MYH10P35580 1976 aa-1.3□□□□□ -2.62
SCN1A-211ENST00000635893 RAD50Q92878 1312 aa-1.3□□□□□ -2.62
SCN1A-211ENST00000635893 AKAP9Q99996 3911 aa-1.3□□□□□ -2.62
SCN1A-211ENST00000635893 ISG15P05161 165 aa-1.3□□□□□ -2.62
SCN1A-211ENST00000635893 RPS12P25398 132 aaKnown RBP-1.3□□□□□ -2.62
SCN1A-211ENST00000635893 DSCR4P56555 118 aaPredicted RBP-1.3□□□□□ -2.62
SCN1A-211ENST00000635893 SNRPD2P62316 118 aaKnown RBP-1.3□□□□□ -2.62
SCN1A-211ENST00000635893 MLLT11Q13015 90 aaPredicted RBP-1.3□□□□□ -2.62
SCN1A-211ENST00000635893 EIF3IQ13347 325 aaKnown RBP-1.3□□□□□ -2.62
SCN1A-211ENST00000635893 ANGPT1Q15389 498 aa-1.3□□□□□ -2.62
SCN1A-211ENST00000635893 ANKRD29Q8N6D5 301 aa-1.3□□□□□ -2.62
SCN1A-211ENST00000635893 ZNF431Q8TF32 576 aaPredicted RBP-1.3□□□□□ -2.62
SCN1A-211ENST00000635893 PLEKHJ1Q9NW61 149 aa-1.3□□□□□ -2.62
SCN1A-211ENST00000635893 TMEM56-RWDD3S4R434 201 aa-1.3□□□□□ -2.62
SCN1A-211ENST00000635893 ANKRD11Q6UB99 2663 aaPredicted RBP-1.3□□□□□ -2.62
SCN1A-211ENST00000635893 MGAMO43451 1857 aa-1.31□□□□□ -2.62
SCN1A-211ENST00000635893 CXCR6O00574 342 aa-1.31□□□□□ -2.62
SCN1A-211ENST00000635893 MYL12AP19105 171 aa-1.31□□□□□ -2.62
SCN1A-211ENST00000635893 RHOBP62745 196 aa-1.31□□□□□ -2.62
SCN1A-211ENST00000635893 CASC2Q6XLA1 102 aa-1.31□□□□□ -2.62
SCN1A-211ENST00000635893 CCDC94Q9BW85 323 aaPredicted RBP-1.31□□□□□ -2.62
SCN1A-211ENST00000635893 CYSLTR1Q9Y271 337 aa-1.31□□□□□ -2.62
SCN1A-211ENST00000635893 RIMBP3CA6NJZ7 1639 aa-1.31□□□□□ -2.62
SCN1A-211ENST00000635893 RIMBP3BA6NNM3 1639 aa-1.31□□□□□ -2.62
SCN1A-211ENST00000635893 LAMC1P11047 1609 aa-1.31□□□□□ -2.62
SCN1A-211ENST00000635893 RIMBP3Q9UFD9 1639 aa-1.31□□□□□ -2.62
SCN1A-211ENST00000635893 ARHGEF11O15085 1522 aa-1.31□□□□□ -2.62
SCN1A-211ENST00000635893 PKD1P98161 4303 aa-1.31□□□□□ -2.62
SCN1A-211ENST00000635893 ARHGEF28Q8N1W1 1705 aaKnown RBP-1.32□□□□□ -2.62
SCN1A-211ENST00000635893 MED13LQ71F56 2210 aa-1.32□□□□□ -2.62
SCN1A-211ENST00000635893 MYH7BA7E2Y1 1941 aa-1.32□□□□□ -2.62
SCN1A-211ENST00000635893 EVC2Q86UK5 1308 aa-1.32□□□□□ -2.62
SCN1A-211ENST00000635893 GOLGA8KD6RF30 607 aa-1.32□□□□□ -2.62
SCN1A-211ENST00000635893 RAB5BP61020 215 aa-1.32□□□□□ -2.62
SCN1A-211ENST00000635893 PPP1R2P1Q96PQ5 205 aa-1.32□□□□□ -2.62
SCN1A-211ENST00000635893 C7orf50Q9BRJ6 194 aaKnown RBP-1.32□□□□□ -2.62
SCN1A-211ENST00000635893 LPAR5Q9H1C0 372 aa-1.32□□□□□ -2.62
SCN1A-211ENST00000635893 PKIGQ9Y2B9 76 aa-1.32□□□□□ -2.62
SCN1A-211ENST00000635893 LAMA1P25391 3075 aa-1.32□□□□□ -2.62
SCN1A-211ENST00000635893 DOCK4Q8N1I0 1966 aa-1.32□□□□□ -2.62
SCN1A-211ENST00000635893 RFX7Q2KHR2 1363 aa-1.33□□□□□ -2.62
SCN1A-211ENST00000635893 ABCC11Q96J66 1382 aa-1.33□□□□□ -2.62
SCN1A-211ENST00000635893 SPAG17Q6Q759 2223 aa-1.33□□□□□ -2.62
SCN1A-211ENST00000635893 C8orf88P0DMB2 117 aa-1.33□□□□□ -2.62
SCN1A-211ENST00000635893 SMIM10L2AP0DMW4 78 aa-1.33□□□□□ -2.62
SCN1A-211ENST00000635893 SMIM10L2BP0DMW5 78 aa-1.33□□□□□ -2.62
SCN1A-211ENST00000635893 RPL5P46777 297 aaKnown RBP-1.33□□□□□ -2.62
SCN1A-211ENST00000635893 RPL37AP61513 92 aaKnown RBP-1.33□□□□□ -2.62
SCN1A-211ENST00000635893 SPINK13Q1W4C9 94 aa-1.33□□□□□ -2.62
SCN1A-211ENST00000635893 C1orf134Q5TEV5 83 aa-1.33□□□□□ -2.62
SCN1A-211ENST00000635893 LRRN1Q6UXK5 716 aa-1.33□□□□□ -2.62
SCN1A-211ENST00000635893 C20orf196Q8IYI0 205 aa-1.33□□□□□ -2.62
SCN1A-211ENST00000635893 OR10K1Q8NGX5 313 aa-1.33□□□□□ -2.62
SCN1A-211ENST00000635893 RAB8BQ92930 207 aa-1.33□□□□□ -2.62
SCN1A-211ENST00000635893 LIMD2Q9BT23 127 aa-1.33□□□□□ -2.62
SCN1A-211ENST00000635893 PBOV1Q9GZY1 135 aa-1.33□□□□□ -2.62
SCN1A-211ENST00000635893 UCK1Q9HA47 277 aa-1.33□□□□□ -2.62
SCN1A-211ENST00000635893 HSPB8Q9UJY1 196 aa-1.33□□□□□ -2.62
SCN1A-211ENST00000635893 HTTP42858 3142 aa-1.33□□□□□ -2.62
SCN1A-211ENST00000635893 DOCK5Q9H7D0 1870 aa-1.33□□□□□ -2.62
SCN1A-211ENST00000635893 MIA2Q96PC5 1412 aa-1.33□□□□□ -2.62
SCN1A-211ENST00000635893 ABCA1O95477 2261 aa-1.33□□□□□ -2.62
SCN1A-211ENST00000635893 HECW2Q9P2P5 1572 aa-1.34□□□□□ -2.62
SCN1A-211ENST00000635893 CMYA5Q8N3K9 4069 aa-1.34□□□□□ -2.62
SCN1A-211ENST00000635893 RBBP6Q7Z6E9 1792 aaKnown RBP-1.34□□□□□ -2.62
SCN1A-211ENST00000635893 SCN8AQ9UQD0 1980 aa-1.34□□□□□ -2.62
SCN1A-211ENST00000635893 VPS13BQ7Z7G8 4022 aa-1.34□□□□□ -2.62
SCN1A-211ENST00000635893 CRYZL1O95825 349 aa-1.34□□□□□ -2.62
SCN1A-211ENST00000635893 OR5G3P0C626 314 aa-1.34□□□□□ -2.62
SCN1A-211ENST00000635893 HIST1H1TP22492 207 aaPredicted RBP-1.34□□□□□ -2.62
SCN1A-211ENST00000635893 TCL1AP56279 114 aa-1.34□□□□□ -2.62
SCN1A-211ENST00000635893 CAV3P56539 151 aa-1.34□□□□□ -2.62
SCN1A-211ENST00000635893 OR10AG1Q8NH19 301 aa-1.34□□□□□ -2.62
SCN1A-211ENST00000635893 SLC35B4Q969S0 331 aa-1.34□□□□□ -2.62
SCN1A-211ENST00000635893 RAB37Q96AX2 223 aa-1.34□□□□□ -2.62
SCN1A-211ENST00000635893 TCEAL2Q9H3H9 227 aaPredicted RBP-1.34□□□□□ -2.62
SCN1A-211ENST00000635893 BOKQ9UMX3 212 aaPredicted RBP-1.34□□□□□ -2.62
SCN1A-211ENST00000635893 LY96Q9Y6Y9 160 aa-1.34□□□□□ -2.62
SCN1A-211ENST00000635893 COL6A5A8TX70 2615 aa-1.34□□□□□ -2.62
SCN1A-211ENST00000635893 SPTA1P02549 2419 aa-1.34□□□□□ -2.62
SCN1A-211ENST00000635893 GVINP1Q7Z2Y8 2422 aa-1.34□□□□□ -2.62
SCN1A-211ENST00000635893 ERBINQ96RT1 1412 aa-1.34□□□□□ -2.62
SCN1A-211ENST00000635893 DNAH7Q8WXX0 4024 aa-1.34□□□□□ -2.62
SCN1A-211ENST00000635893 RIF1Q5UIP0 2472 aaKnown RBP-1.34□□□□□ -2.62
SCN1A-211ENST00000635893 IQCF5A8MTL0 148 aa-1.35□□□□□ -2.63
SCN1A-211ENST00000635893 SERPINE1P05121 402 aa-1.35□□□□□ -2.63
SCN1A-211ENST00000635893 COX5BP10606 129 aa-1.35□□□□□ -2.63
SCN1A-211ENST00000635893 SERPINB9P50453 376 aa-1.35□□□□□ -2.63
SCN1A-211ENST00000635893 UBE2G2P60604 165 aa-1.35□□□□□ -2.63
SCN1A-211ENST00000635893 CDK6Q00534 326 aa-1.35□□□□□ -2.63
SCN1A-211ENST00000635893 GLYATL3Q5SZD4 288 aa-1.35□□□□□ -2.63
SCN1A-211ENST00000635893 HIST2H3PS2Q5TEC6 136 aa-1.35□□□□□ -2.63
SCN1A-211ENST00000635893 OR5AS1Q8N127 324 aa-1.35□□□□□ -2.63
SCN1A-211ENST00000635893 TMEM86BQ8N661 226 aa-1.35□□□□□ -2.63
SCN1A-211ENST00000635893 PIGXQ8TBF5 258 aa-1.35□□□□□ -2.63
SCN1A-211ENST00000635893 C20orf27Q9GZN8 174 aa-1.35□□□□□ -2.63
SCN1A-211ENST00000635893 IMP3Q9NV31 184 aaKnown RBP-1.35□□□□□ -2.63
SCN1A-211ENST00000635893 FBXO5Q9UKT4 447 aa-1.35□□□□□ -2.63
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms