RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 PPIBP23284 216 aaKnown RBP-0.32□□□□□ -2.46
SCN1A-208ENST00000625916 C10orf99Q6UWK7 81 aa-0.32□□□□□ -2.46
SCN1A-208ENST00000625916 OR10K1Q8NGX5 313 aa-0.32□□□□□ -2.46
SCN1A-208ENST00000625916 Q8TAT8 98 aa-0.32□□□□□ -2.46
SCN1A-208ENST00000625916 CMSS1Q9BQ75 279 aaKnown RBP-0.32□□□□□ -2.46
SCN1A-208ENST00000625916 OPTCQ9UBM4 332 aa-0.32□□□□□ -2.46
SCN1A-208ENST00000625916 OR52A1Q9UKL2 312 aa-0.32□□□□□ -2.46
SCN1A-208ENST00000625916 NOSIPQ9Y314 301 aaKnown RBP-0.32□□□□□ -2.46
SCN1A-208ENST00000625916 SIP14410 1827 aa-0.32□□□□□ -2.46
SCN1A-208ENST00000625916 FASNP49327 2511 aaKnown RBP-0.32□□□□□ -2.46
SCN1A-208ENST00000625916 ARHGEF28Q8N1W1 1705 aaKnown RBP-0.33□□□□□ -2.46
SCN1A-208ENST00000625916 CELSR1Q9NYQ6 3014 aa-0.33□□□□□ -2.46
SCN1A-208ENST00000625916 hCG_1818297A0A087WSY0 165 aa-0.33□□□□□ -2.46
SCN1A-208ENST00000625916 A8MT66 165 aa-0.33□□□□□ -2.46
SCN1A-208ENST00000625916 GPR31O00270 319 aa-0.33□□□□□ -2.46
SCN1A-208ENST00000625916 NDUFB3O43676 98 aa-0.33□□□□□ -2.46
SCN1A-208ENST00000625916 TTRP02766 147 aa-0.33□□□□□ -2.46
SCN1A-208ENST00000625916 RNASE4P34096 147 aaKnown RBP-0.33□□□□□ -2.46
SCN1A-208ENST00000625916 FXYD4P59646 89 aa-0.33□□□□□ -2.46
SCN1A-208ENST00000625916 CDK6Q00534 326 aa-0.33□□□□□ -2.46
SCN1A-208ENST00000625916 KRR1Q13601 381 aaKnown RBP-0.33□□□□□ -2.46
SCN1A-208ENST00000625916 CCDC122Q5T0U0 273 aa-0.33□□□□□ -2.46
SCN1A-208ENST00000625916 LYRM7Q5U5X0 104 aa-0.33□□□□□ -2.46
SCN1A-208ENST00000625916 OR5AS1Q8N127 324 aa-0.33□□□□□ -2.46
SCN1A-208ENST00000625916 OR6V1Q8N148 313 aa-0.33□□□□□ -2.46
SCN1A-208ENST00000625916 CT55Q8WUE5 264 aa-0.33□□□□□ -2.46
SCN1A-208ENST00000625916 MUCL1Q96DR8 90 aa-0.33□□□□□ -2.46
SCN1A-208ENST00000625916 C8orf76Q96K31 380 aa-0.33□□□□□ -2.46
SCN1A-208ENST00000625916 SLC25A21Q9BQT8 299 aaPredicted RBP-0.33□□□□□ -2.46
SCN1A-208ENST00000625916 TMEM133Q9H2Q1 129 aa-0.33□□□□□ -2.46
SCN1A-208ENST00000625916 TCEAL2Q9H3H9 227 aaPredicted RBP-0.33□□□□□ -2.46
SCN1A-208ENST00000625916 RNF122Q9H9V4 155 aa-0.33□□□□□ -2.46
SCN1A-208ENST00000625916 NKIRAS1Q9NYS0 192 aa-0.33□□□□□ -2.46
SCN1A-208ENST00000625916 TVP23BQ9NYZ1 205 aa-0.33□□□□□ -2.46
SCN1A-208ENST00000625916 VPS29Q9UBQ0 182 aa-0.33□□□□□ -2.46
SCN1A-208ENST00000625916 GUCA1BQ9UMX6 200 aa-0.33□□□□□ -2.46
SCN1A-208ENST00000625916 LOC285556D6RIA3 1793 aa-0.33□□□□□ -2.46
SCN1A-208ENST00000625916 FAT1Q14517 4588 aa-0.33□□□□□ -2.46
SCN1A-208ENST00000625916 SNAPC4Q5SXM2 1469 aa-0.34□□□□□ -2.46
SCN1A-208ENST00000625916 CACNA1CQ13936 2221 aa-0.34□□□□□ -2.46
SCN1A-208ENST00000625916 UNC13CQ8NB66 2214 aa-0.34□□□□□ -2.46
SCN1A-208ENST00000625916 Q6Q795 121 aa-0.34□□□□□ -2.46
SCN1A-208ENST00000625916 PDZD9Q8IXQ8 264 aa-0.34□□□□□ -2.46
SCN1A-208ENST00000625916 FANCMQ8IYD8 2048 aa-0.34□□□□□ -2.46
SCN1A-208ENST00000625916 C12orf45Q8N5I9 185 aaPredicted RBP-0.34□□□□□ -2.46
SCN1A-208ENST00000625916 OR10AG1Q8NH19 301 aa-0.34□□□□□ -2.46
SCN1A-208ENST00000625916 SLC25A40Q8TBP6 338 aa-0.34□□□□□ -2.46
SCN1A-208ENST00000625916 RAB37Q96AX2 223 aa-0.34□□□□□ -2.46
SCN1A-208ENST00000625916 BORCS7Q96B45 105 aa-0.34□□□□□ -2.46
SCN1A-208ENST00000625916 CCL19Q99731 98 aa-0.34□□□□□ -2.46
SCN1A-208ENST00000625916 GGACTQ9BVM4 153 aa-0.34□□□□□ -2.46
SCN1A-208ENST00000625916 SPTBP11277 2137 aa-0.34□□□□□ -2.46
SCN1A-208ENST00000625916 JMJD1CQ15652 2540 aa-0.34□□□□□ -2.46
SCN1A-208ENST00000625916 PDZD2O15018 2839 aa-0.35□□□□□ -2.47
SCN1A-208ENST00000625916 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP-0.35□□□□□ -2.47
SCN1A-208ENST00000625916 hADV38S2A0JD32 116 aa-0.35□□□□□ -2.47
SCN1A-208ENST00000625916 C17orf112F2Z3M2 114 aa-0.35□□□□□ -2.47
SCN1A-208ENST00000625916 M0QX08 132 aa-0.35□□□□□ -2.47
SCN1A-208ENST00000625916 M0R233 179 aa-0.35□□□□□ -2.47
SCN1A-208ENST00000625916 CNIH1O95406 144 aa-0.35□□□□□ -2.47
SCN1A-208ENST00000625916 TPM3P06753 285 aa-0.35□□□□□ -2.47
SCN1A-208ENST00000625916 C8GP07360 202 aa-0.35□□□□□ -2.47
SCN1A-208ENST00000625916 SRIP30626 198 aa-0.35□□□□□ -2.47
SCN1A-208ENST00000625916 MAGOHP61326 146 aaKnown RBP-0.35□□□□□ -2.47
SCN1A-208ENST00000625916 MYL5Q02045 173 aa-0.35□□□□□ -2.47
SCN1A-208ENST00000625916 OCIAD2Q56VL3 154 aa-0.35□□□□□ -2.47
SCN1A-208ENST00000625916 Q5BKY6 102 aa-0.35□□□□□ -2.47
SCN1A-208ENST00000625916 C22orf39Q6P5X5 142 aa-0.35□□□□□ -2.47
SCN1A-208ENST00000625916 LYG2Q86SG7 212 aa-0.35□□□□□ -2.47
SCN1A-208ENST00000625916 YPEL2Q96QA6 119 aa-0.35□□□□□ -2.47
SCN1A-208ENST00000625916 CCDC94Q9BW85 323 aaPredicted RBP-0.35□□□□□ -2.47
SCN1A-208ENST00000625916 UCK1Q9HA47 277 aa-0.35□□□□□ -2.47
SCN1A-208ENST00000625916 BOKQ9UMX3 212 aaPredicted RBP-0.35□□□□□ -2.47
SCN1A-208ENST00000625916 ATP6V1DQ9Y5K8 247 aa-0.35□□□□□ -2.47
SCN1A-208ENST00000625916 MAP3K5Q99683 1374 aa-0.35□□□□□ -2.47
SCN1A-208ENST00000625916 A0A087WSZ3 146 aa-0.36□□□□□ -2.47
SCN1A-208ENST00000625916 CLDN24A6NM45 220 aa-0.36□□□□□ -2.47
SCN1A-208ENST00000625916 B4DSR2 109 aa-0.36□□□□□ -2.47
SCN1A-208ENST00000625916 M0R036 132 aa-0.36□□□□□ -2.47
SCN1A-208ENST00000625916 OR7C1O76099 320 aaPredicted RBP-0.36□□□□□ -2.47
SCN1A-208ENST00000625916 IFNA5P01569 189 aa-0.36□□□□□ -2.47
SCN1A-208ENST00000625916 IFNA16P05015 189 aa-0.36□□□□□ -2.47
SCN1A-208ENST00000625916 FREM3P0C091 2139 aa-0.36□□□□□ -2.47
SCN1A-208ENST00000625916 DEFA3P59666 94 aa-0.36□□□□□ -2.47
SCN1A-208ENST00000625916 IAH1Q2TAA2 248 aaPredicted RBP-0.36□□□□□ -2.47
SCN1A-208ENST00000625916 BCL2L15Q5TBC7 163 aa-0.36□□□□□ -2.47
SCN1A-208ENST00000625916 C1orf134Q5TEV5 83 aa-0.36□□□□□ -2.47
SCN1A-208ENST00000625916 CLDN22Q8N7P3 220 aa-0.36□□□□□ -2.47
SCN1A-208ENST00000625916 TMEM126AQ9H061 195 aa-0.36□□□□□ -2.47
SCN1A-208ENST00000625916 PLXNA4Q9HCM2 1894 aa-0.36□□□□□ -2.47
SCN1A-208ENST00000625916 KNTC1P50748 2209 aa-0.36□□□□□ -2.47
SCN1A-208ENST00000625916 MYO18BQ8IUG5 2567 aa-0.36□□□□□ -2.47
SCN1A-208ENST00000625916 RTL1A6NKG5 1358 aa-0.36□□□□□ -2.47
SCN1A-208ENST00000625916 NBEAL1Q6ZS30 2694 aa-0.36□□□□□ -2.47
SCN1A-208ENST00000625916 LAMA3Q16787 3333 aa-0.36□□□□□ -2.47
SCN1A-208ENST00000625916 PLXND1Q9Y4D7 1925 aa-0.36□□□□□ -2.47
SCN1A-208ENST00000625916 ERBINQ96RT1 1412 aa-0.37□□□□□ -2.47
SCN1A-208ENST00000625916 UBR5O95071 2799 aaPredicted RBP-0.37□□□□□ -2.47
SCN1A-208ENST00000625916 MYH10P35580 1976 aa-0.37□□□□□ -2.47
SCN1A-208ENST00000625916 PIEZO1Q92508 2521 aa-0.37□□□□□ -2.47
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms