RNA–Protein interactions for RNA: ENST00000617451.4

PTPRF-216, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5 BASIC

Gene PTPRF, Length 1,129 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-216ENST00000617451 ORM2P19652 201 aa17.57■□□□□ 0.4
PTPRF-216ENST00000617451 GATA2P23769 480 aaPredicted RBP17.57■□□□□ 0.4
PTPRF-216ENST00000617451 BPIFCQ8NFQ6 507 aa17.57■□□□□ 0.4
PTPRF-216ENST00000617451 BCL7BQ9BQE9 202 aa17.57■□□□□ 0.4
PTPRF-216ENST00000617451 SLIRPQ9GZT3 109 aaKnown RBP17.57■□□□□ 0.4
PTPRF-216ENST00000617451 TRAV8-2A0A0B4J237 113 aa17.56■□□□□ 0.4
PTPRF-216ENST00000617451 LYRM9A8MSI8 78 aa17.56■□□□□ 0.4
PTPRF-216ENST00000617451 ZNF705GA8MUZ8 300 aaPredicted RBP17.56■□□□□ 0.4
PTPRF-216ENST00000617451 M0R2Z0 102 aa17.56■□□□□ 0.4
PTPRF-216ENST00000617451 SYNGR2O43760 224 aa17.56■□□□□ 0.4
PTPRF-216ENST00000617451 DUSP14O95147 198 aaKnown RBP17.56■□□□□ 0.4
PTPRF-216ENST00000617451 FAUP35544 74 aaKnown RBP17.56■□□□□ 0.4
PTPRF-216ENST00000617451 TMBIM6P55061 237 aa17.56■□□□□ 0.4
PTPRF-216ENST00000617451 SPINK13Q1W4C9 94 aa17.56■□□□□ 0.4
PTPRF-216ENST00000617451 IGFL4Q6B9Z1 124 aa17.56■□□□□ 0.4
PTPRF-216ENST00000617451 TMEM147Q9BVK8 224 aa17.56■□□□□ 0.4
PTPRF-216ENST00000617451 WRBO00258 174 aa17.55■□□□□ 0.4
PTPRF-216ENST00000617451 INSP01308 110 aa17.55■□□□□ 0.4
PTPRF-216ENST00000617451 VAMP1P23763 118 aa17.55■□□□□ 0.4
PTPRF-216ENST00000617451 LRP1BQ9NZR2 4599 aa17.55■□□□□ 0.4
PTPRF-216ENST00000617451 TSPOP30536 169 aa17.54■□□□□ 0.4
PTPRF-216ENST00000617451 S100A7P31151 101 aa17.54■□□□□ 0.4
PTPRF-216ENST00000617451 B2MP61769 119 aa17.54■□□□□ 0.4
PTPRF-216ENST00000617451 RNF182Q8N6D2 247 aa17.54■□□□□ 0.4
PTPRF-216ENST00000617451 TRIM63Q969Q1 353 aa17.54■□□□□ 0.4
PTPRF-216ENST00000617451 SPANXN5Q5MJ07 72 aa17.53■□□□□ 0.4
PTPRF-216ENST00000617451 ATG101Q9BSB4 218 aa17.53■□□□□ 0.4
PTPRF-216ENST00000617451 KRTAP4-5Q9BYR2 181 aa17.53■□□□□ 0.4
PTPRF-216ENST00000617451 DEFB130BP0DP73 79 aa17.52■□□□□ 0.4
PTPRF-216ENST00000617451 DEFB130AP0DP74 79 aa17.52■□□□□ 0.4
PTPRF-216ENST00000617451 AP3S2P59780 193 aa17.52■□□□□ 0.4
PTPRF-216ENST00000617451 AKR1C1Q04828 323 aa17.52■□□□□ 0.4
PTPRF-216ENST00000617451 BAP18Q8IXM2 172 aa17.52■□□□□ 0.4
PTPRF-216ENST00000617451 PLAC8L1A1L4L8 177 aa17.51■□□□□ 0.39
PTPRF-216ENST00000617451 H3BRN7 92 aa17.51■□□□□ 0.39
PTPRF-216ENST00000617451 SFT2D2O95562 160 aa17.51■□□□□ 0.39
PTPRF-216ENST00000617451 FGL1Q08830 312 aa17.51■□□□□ 0.39
PTPRF-216ENST00000617451 PPP1R1AQ13522 171 aa17.51■□□□□ 0.39
PTPRF-216ENST00000617451 ACOT7LQ6ZUV0 252 aa17.51■□□□□ 0.39
PTPRF-216ENST00000617451 TOMM5Q8N4H5 51 aa17.51■□□□□ 0.39
PTPRF-216ENST00000617451 SLC25A21Q9BQT8 299 aaPredicted RBP17.51■□□□□ 0.39
PTPRF-216ENST00000617451 SLC25A39Q9BZJ4 359 aaPredicted RBP17.51■□□□□ 0.39
PTPRF-216ENST00000617451 STRAPQ9Y3F4 350 aaKnown RBP17.51■□□□□ 0.39
PTPRF-216ENST00000617451 H3BP45 60 aa17.5■□□□□ 0.39
PTPRF-216ENST00000617451 HOXB5P09067 269 aa17.5■□□□□ 0.39
PTPRF-216ENST00000617451 AZU1P20160 251 aa17.5■□□□□ 0.39
PTPRF-216ENST00000617451 TMEM144Q7Z5S9 345 aa17.5■□□□□ 0.39
PTPRF-216ENST00000617451 ZNF738Q8NE65 137 aa17.5■□□□□ 0.39
PTPRF-216ENST00000617451 MCFD2Q8NI22 146 aa17.5■□□□□ 0.39
PTPRF-216ENST00000617451 SHANK2-AS3Q9BTD1 123 aa17.5■□□□□ 0.39
PTPRF-216ENST00000617451 TRAV12-2A0A075B6T6 113 aa17.49■□□□□ 0.39
PTPRF-216ENST00000617451 BOLA2-SMG1P6H3BVE0 249 aa17.49■□□□□ 0.39
PTPRF-216ENST00000617451 TNP2Q05952 138 aa17.49■□□□□ 0.39
PTPRF-216ENST00000617451 FCN2Q15485 313 aa17.49■□□□□ 0.39
PTPRF-216ENST00000617451 CYP2G1PQ6ZSU1 146 aa17.49■□□□□ 0.39
PTPRF-216ENST00000617451 ZNRF2Q8NHG8 242 aa17.49■□□□□ 0.39
PTPRF-216ENST00000617451 NBDYA0A0U1RRE5 68 aa17.48■□□□□ 0.39
PTPRF-216ENST00000617451 F5H768 121 aa17.48■□□□□ 0.39
PTPRF-216ENST00000617451 H3BMQ9 156 aa17.48■□□□□ 0.39
PTPRF-216ENST00000617451 IL5P05113 134 aa17.48■□□□□ 0.39
PTPRF-216ENST00000617451 RPL7P18124 248 aaKnown RBP17.48■□□□□ 0.39
PTPRF-216ENST00000617451 PYDC2Q56P42 97 aa17.48■□□□□ 0.39
PTPRF-216ENST00000617451 HIGD1AQ9Y241 93 aa17.48■□□□□ 0.39
PTPRF-216ENST00000617451 RAP2BP61225 183 aa17.47■□□□□ 0.39
PTPRF-216ENST00000617451 CBY3A6NI87 242 aa17.46■□□□□ 0.39
PTPRF-216ENST00000617451 HYPMO75409 117 aa17.46■□□□□ 0.39
PTPRF-216ENST00000617451 NUDT3O95989 172 aa17.46■□□□□ 0.39
PTPRF-216ENST00000617451 ATP5G1P05496 136 aa17.46■□□□□ 0.39
PTPRF-216ENST00000617451 ATP5G3P48201 142 aa17.46■□□□□ 0.39
PTPRF-216ENST00000617451 PLP1P60201 277 aa17.46■□□□□ 0.39
PTPRF-216ENST00000617451 ID3Q02535 119 aa17.46■□□□□ 0.39
PTPRF-216ENST00000617451 TMEM256Q8N2U0 113 aa17.46■□□□□ 0.39
PTPRF-216ENST00000617451 OR8A1Q8NGG7 326 aa17.46■□□□□ 0.39
PTPRF-216ENST00000617451 DEDD2Q8WXF8 326 aa17.46■□□□□ 0.39
PTPRF-216ENST00000617451 LINC01587Q99440 93 aa17.46■□□□□ 0.39
PTPRF-216ENST00000617451 SMCO3A2RU48 225 aa17.45■□□□□ 0.38
PTPRF-216ENST00000617451 CXCL3P19876 107 aa17.45■□□□□ 0.38
PTPRF-216ENST00000617451 RHOBP62745 196 aa17.45■□□□□ 0.38
PTPRF-216ENST00000617451 HIST1H1AQ02539 215 aaPredicted RBP17.45■□□□□ 0.38
PTPRF-216ENST00000617451 C6orf223Q8N319 242 aa17.45■□□□□ 0.38
PTPRF-216ENST00000617451 V9GYH0 126 aa17.45■□□□□ 0.38
PTPRF-216ENST00000617451 A0A087X0K7 114 aa17.44■□□□□ 0.38
PTPRF-216ENST00000617451 C16orf90A8MZG2 172 aa17.44■□□□□ 0.38
PTPRF-216ENST00000617451 NOL3O60936 208 aaKnown RBP17.44■□□□□ 0.38
PTPRF-216ENST00000617451 LINC00869P0C866 280 aa17.44■□□□□ 0.38
PTPRF-216ENST00000617451 TAS2R60P59551 318 aa17.44■□□□□ 0.38
PTPRF-216ENST00000617451 SELENOTP62341 195 aa17.44■□□□□ 0.38
PTPRF-216ENST00000617451 POLR2GP62487 172 aaKnown RBP eCLIP17.44■□□□□ 0.38
PTPRF-216ENST00000617451 UHRF2Q96PU4 802 aa17.44■□□□□ 0.38
PTPRF-216ENST00000617451 PMS2P5A8MQ11 134 aa17.43■□□□□ 0.38
PTPRF-216ENST00000617451 CCL18P55774 89 aa17.43■□□□□ 0.38
PTPRF-216ENST00000617451 PSG3Q16557 428 aa17.43■□□□□ 0.38
PTPRF-216ENST00000617451 PPP1R14DQ9NXH3 145 aa17.43■□□□□ 0.38
PTPRF-216ENST00000617451 PSENENQ9NZ42 101 aa17.43■□□□□ 0.38
PTPRF-216ENST00000617451 LINC00588Q9Y4M8 146 aa17.43■□□□□ 0.38
PTPRF-216ENST00000617451 ADAP1O75689 374 aa17.42■□□□□ 0.38
PTPRF-216ENST00000617451 OR5G3P0C626 314 aa17.42■□□□□ 0.38
PTPRF-216ENST00000617451 UBE2MP61081 183 aaKnown RBP17.42■□□□□ 0.38
PTPRF-216ENST00000617451 C16orf74Q96GX8 76 aa17.42■□□□□ 0.38
PTPRF-216ENST00000617451 TIMM8BQ9Y5J9 83 aaPredicted RBP17.42■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms