RNA–Protein interactions for RNA: ENST00000613788.1

CD48-203, Transcript of CD48 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD48, Length 1,500 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD48-203ENST00000613788 OR2K2Q8NGT1 345 aa11.12□□□□□ -0.63
CD48-203ENST00000613788 GLMPQ8WWB7 406 aa11.12□□□□□ -0.63
CD48-203ENST00000613788 ACTR3CQ9C0K3 210 aaPredicted RBP11.12□□□□□ -0.63
CD48-203ENST00000613788 TRRAPQ9Y4A5 3859 aa11.12□□□□□ -0.63
CD48-203ENST00000613788 CDC34P49427 236 aaPredicted RBP11.11□□□□□ -0.63
CD48-203ENST00000613788 RAB5CP51148 216 aa11.11□□□□□ -0.63
CD48-203ENST00000613788 RPL11P62913 178 aaKnown RBP11.11□□□□□ -0.63
CD48-203ENST00000613788 LEMD1Q68G75 181 aa11.11□□□□□ -0.63
CD48-203ENST00000613788 DPPA3Q6W0C5 159 aa11.11□□□□□ -0.63
CD48-203ENST00000613788 SIGLEC15Q6ZMC9 328 aa11.11□□□□□ -0.63
CD48-203ENST00000613788 MIR17HGQ75NE6 70 aa11.11□□□□□ -0.63
CD48-203ENST00000613788 TCF24Q7RTU0 167 aa11.11□□□□□ -0.63
CD48-203ENST00000613788 BPIFA4PQ86YQ2 179 aa11.11□□□□□ -0.63
CD48-203ENST00000613788 TRAV5A0A0B4J249 113 aa11.1□□□□□ -0.63
CD48-203ENST00000613788 TRAV25A0A0B4J276 109 aa11.1□□□□□ -0.63
CD48-203ENST00000613788 GALR1P47211 349 aa11.1□□□□□ -0.63
CD48-203ENST00000613788 CD300EQ496F6 205 aaPredicted RBP11.1□□□□□ -0.63
CD48-203ENST00000613788 MORN5Q5VZ52 161 aa11.1□□□□□ -0.63
CD48-203ENST00000613788 SPATA31B1PQ5VZV4 182 aa11.1□□□□□ -0.63
CD48-203ENST00000613788 FAM90A2PQ658T7 463 aa11.1□□□□□ -0.63
CD48-203ENST00000613788 STXBP6Q8NFX7 210 aa11.1□□□□□ -0.63
CD48-203ENST00000613788 WIPF1O43516 503 aa11.09□□□□□ -0.63
CD48-203ENST00000613788 SULT1A2P50226 295 aa11.09□□□□□ -0.63
CD48-203ENST00000613788 PAFAH1B2P68402 229 aa11.09□□□□□ -0.63
CD48-203ENST00000613788 LCN12Q6JVE5 192 aa11.09□□□□□ -0.63
CD48-203ENST00000613788 ALKAL2Q6UX46 152 aa11.09□□□□□ -0.63
CD48-203ENST00000613788 RAB24Q969Q5 203 aa11.09□□□□□ -0.63
CD48-203ENST00000613788 PLA2G2EQ9NZK7 142 aa11.09□□□□□ -0.63
CD48-203ENST00000613788 VWFP04275 2813 aa11.09□□□□□ -0.63
CD48-203ENST00000613788 CTXND1A0A1B0GTU2 59 aa11.09□□□□□ -0.63
CD48-203ENST00000613788 ZNF785A8K8V0 405 aa11.09□□□□□ -0.63
CD48-203ENST00000613788 TSPAN4O14817 238 aa11.09□□□□□ -0.63
CD48-203ENST00000613788 KHDC3LQ587J8 217 aa11.09□□□□□ -0.63
CD48-203ENST00000613788 TMEM61Q8N0U2 210 aa11.09□□□□□ -0.63
CD48-203ENST00000613788 FAM213BQ8TBF2 198 aa11.09□□□□□ -0.63
CD48-203ENST00000613788 SLC25A2Q9BXI2 301 aa11.09□□□□□ -0.63
CD48-203ENST00000613788 TMEM14CQ9P0S9 112 aa11.09□□□□□ -0.63
CD48-203ENST00000613788 SELENOKQ9Y6D0 94 aa11.09□□□□□ -0.63
CD48-203ENST00000613788 OR7C2O60412 319 aa11.08□□□□□ -0.64
CD48-203ENST00000613788 ATF4P18848 351 aaPredicted RBP11.08□□□□□ -0.64
CD48-203ENST00000613788 TEX261Q6UWH6 196 aa11.08□□□□□ -0.64
CD48-203ENST00000613788 PQLC2Q6ZP29 291 aa11.08□□□□□ -0.64
CD48-203ENST00000613788 RNF141Q8WVD5 230 aa11.08□□□□□ -0.64
CD48-203ENST00000613788 FAM167A-AS1Q96KT0 104 aa11.08□□□□□ -0.64
CD48-203ENST00000613788 OR51M1Q9H341 326 aa11.08□□□□□ -0.64
CD48-203ENST00000613788 ZMAT5Q9UDW3 170 aaKnown RBP11.08□□□□□ -0.64
CD48-203ENST00000613788 IGKV3-7A0A075B6H7 116 aa11.07□□□□□ -0.64
CD48-203ENST00000613788 DNASE2O00115 360 aaPredicted RBP11.07□□□□□ -0.64
CD48-203ENST00000613788 STAG3L2P0CL84 134 aa11.07□□□□□ -0.64
CD48-203ENST00000613788 STAG3L3P0CL85 134 aa11.07□□□□□ -0.64
CD48-203ENST00000613788 MEOX2P50222 304 aa11.07□□□□□ -0.64
CD48-203ENST00000613788 OXLD1Q5BKU9 147 aa11.07□□□□□ -0.64
CD48-203ENST00000613788 SPAG8Q99932 426 aaPredicted RBP11.07□□□□□ -0.64
CD48-203ENST00000613788 PAXXQ9BUH6 204 aa11.07□□□□□ -0.64
CD48-203ENST00000613788 NRN1Q9NPD7 142 aa11.07□□□□□ -0.64
CD48-203ENST00000613788 MRPS12O15235 138 aaKnown RBP11.06□□□□□ -0.64
CD48-203ENST00000613788 HMGB3O15347 200 aaKnown RBP11.06□□□□□ -0.64
CD48-203ENST00000613788 CXorf1O96002 111 aa11.06□□□□□ -0.64
CD48-203ENST00000613788 IFNA7P01567 189 aa11.06□□□□□ -0.64
CD48-203ENST00000613788 HIST1H1EP10412 219 aaKnown RBP11.06□□□□□ -0.64
CD48-203ENST00000613788 FHITP49789 147 aa11.06□□□□□ -0.64
CD48-203ENST00000613788 ZNF726P1Q15940 193 aa11.06□□□□□ -0.64
CD48-203ENST00000613788 GUCA2BQ16661 112 aa11.06□□□□□ -0.64
CD48-203ENST00000613788 GUK1Q16774 197 aa11.06□□□□□ -0.64
CD48-203ENST00000613788 FAM74A1Q5RGS3 127 aa11.06□□□□□ -0.64
CD48-203ENST00000613788 MS4A6AQ9H2W1 248 aa11.06□□□□□ -0.64
CD48-203ENST00000613788 HRH4Q9H3N8 390 aa11.06□□□□□ -0.64
CD48-203ENST00000613788 SMAD5-AS1Q9Y6J3 95 aa11.06□□□□□ -0.64
CD48-203ENST00000613788 A0A087X0K7 114 aa11.05□□□□□ -0.64
CD48-203ENST00000613788 TRAV2A0A0B4J234 112 aa11.05□□□□□ -0.64
CD48-203ENST00000613788 IZUMO1RA6ND01 250 aa11.05□□□□□ -0.64
CD48-203ENST00000613788 OR4C46A6NHA9 309 aa11.05□□□□□ -0.64
CD48-203ENST00000613788 EIF3GO75821 320 aaKnown RBP eCLIP11.05□□□□□ -0.64
CD48-203ENST00000613788 H2AFB1P0C5Y9 115 aa11.05□□□□□ -0.64
CD48-203ENST00000613788 IGLC2P0DOY2 106 aa11.05□□□□□ -0.64
CD48-203ENST00000613788 GP9P14770 177 aa11.05□□□□□ -0.64
CD48-203ENST00000613788 SAMD13Q5VXD3 122 aa11.05□□□□□ -0.64
CD48-203ENST00000613788 LCN15Q6UWW0 184 aa11.05□□□□□ -0.64
CD48-203ENST00000613788 GBGT1Q8N5D6 347 aa11.05□□□□□ -0.64
CD48-203ENST00000613788 ZNF680Q8NEM1 530 aa11.05□□□□□ -0.64
CD48-203ENST00000613788 SFT2D1Q8WV19 159 aa11.05□□□□□ -0.64
CD48-203ENST00000613788 MBD3L1Q8WWY6 194 aa11.05□□□□□ -0.64
CD48-203ENST00000613788 DNHD1Q96M86 4753 aa11.05□□□□□ -0.64
CD48-203ENST00000613788 MAP1LC3B2A6NCE7 125 aa11.04□□□□□ -0.64
CD48-203ENST00000613788 ZNF705EA8MWA4 302 aaPredicted RBP11.04□□□□□ -0.64
CD48-203ENST00000613788 TEX46H3BTG2 121 aa11.04□□□□□ -0.64
CD48-203ENST00000613788 NBEAP1P0C6P0 100 aa11.04□□□□□ -0.64
CD48-203ENST00000613788 ARL14EPLP0DKL9 152 aa11.04□□□□□ -0.64
CD48-203ENST00000613788 PYYP10082 97 aa11.04□□□□□ -0.64
CD48-203ENST00000613788 SSX7Q7RTT5 188 aa11.04□□□□□ -0.64
CD48-203ENST00000613788 WFDC3Q8IUB2 231 aa11.04□□□□□ -0.64
CD48-203ENST00000613788 LRRC20Q8TCA0 184 aa11.04□□□□□ -0.64
CD48-203ENST00000613788 MAP1LC3BQ9GZQ8 125 aa11.04□□□□□ -0.64
CD48-203ENST00000613788 OR10J4P0C629 311 aa11.04□□□□□ -0.64
CD48-203ENST00000613788 TFPI2P48307 235 aa11.04□□□□□ -0.64
CD48-203ENST00000613788 UBE2L3P68036 154 aaKnown RBP11.04□□□□□ -0.64
CD48-203ENST00000613788 BLOC1S1P78537 153 aa11.04□□□□□ -0.64
CD48-203ENST00000613788 SAMD5Q5TGI4 173 aa11.04□□□□□ -0.64
CD48-203ENST00000613788 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa11.04□□□□□ -0.64
CD48-203ENST00000613788 DCANP1Q8TF63 244 aa11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms