RNA–Protein interactions for RNA: ENST00000601091.5

LIG1-220, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 3,957 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-220ENST00000601091 ACACAQ13085 2346 aa8.51□□□□□ -1.05
LIG1-220ENST00000601091 A0A1W2PPI3 338 aa8.51□□□□□ -1.05
LIG1-220ENST00000601091 BMPR1BO00238 502 aa8.51□□□□□ -1.05
LIG1-220ENST00000601091 CDX4O14627 284 aaPredicted RBP8.51□□□□□ -1.05
LIG1-220ENST00000601091 COX7A1P24310 79 aa8.51□□□□□ -1.05
LIG1-220ENST00000601091 COL8A2P25067 703 aa8.51□□□□□ -1.05
LIG1-220ENST00000601091 KHDC1LQ5JSQ8 128 aa8.51□□□□□ -1.05
LIG1-220ENST00000601091 RASL11BQ9BPW5 248 aa8.51□□□□□ -1.05
LIG1-220ENST00000601091 MRPL32Q9BYC8 188 aaKnown RBP8.51□□□□□ -1.05
LIG1-220ENST00000601091 HILPDAQ9Y5L2 63 aa8.51□□□□□ -1.05
LIG1-220ENST00000601091 ASPMQ8IZT6 3477 aa8.51□□□□□ -1.05
LIG1-220ENST00000601091 UPK2O00526 184 aa8.51□□□□□ -1.05
LIG1-220ENST00000601091 GFRA3O60609 400 aa8.51□□□□□ -1.05
LIG1-220ENST00000601091 SNCGO76070 127 aa8.51□□□□□ -1.05
LIG1-220ENST00000601091 GATA2P23769 480 aaPredicted RBP8.51□□□□□ -1.05
LIG1-220ENST00000601091 LYZP61626 148 aa8.51□□□□□ -1.05
LIG1-220ENST00000601091 SLC25A34Q6PIV7 304 aa8.51□□□□□ -1.05
LIG1-220ENST00000601091 PCNX1Q96RV3 2341 aa8.51□□□□□ -1.05
LIG1-220ENST00000601091 TRAV3A0A0B4J244 114 aa8.5□□□□□ -1.05
LIG1-220ENST00000601091 PLAUP00749 431 aa8.5□□□□□ -1.05
LIG1-220ENST00000601091 P01737 135 aa8.5□□□□□ -1.05
LIG1-220ENST00000601091 CD40P25942 277 aa8.5□□□□□ -1.05
LIG1-220ENST00000601091 BVES-AS1Q5T3Y7 98 aa8.5□□□□□ -1.05
LIG1-220ENST00000601091 C1orf195Q5TG92 126 aa8.5□□□□□ -1.05
LIG1-220ENST00000601091 OR4F17Q8NGA8 305 aa8.5□□□□□ -1.05
LIG1-220ENST00000601091 MGST2Q99735 147 aa8.5□□□□□ -1.05
LIG1-220ENST00000601091 MED13Q9UHV7 2174 aa8.5□□□□□ -1.05
LIG1-220ENST00000601091 IGKV1D-17A0A075B6S4 117 aa8.5□□□□□ -1.05
LIG1-220ENST00000601091 APELAP0DMC3 54 aa8.5□□□□□ -1.05
LIG1-220ENST00000601091 RPL27AP46776 148 aaKnown RBP8.5□□□□□ -1.05
LIG1-220ENST00000601091 HCP5Q6MZN7 132 aa8.5□□□□□ -1.05
LIG1-220ENST00000601091 C20orf78Q9BR46 151 aa8.5□□□□□ -1.05
LIG1-220ENST00000601091 PEMTQ9UBM1 199 aa8.5□□□□□ -1.05
LIG1-220ENST00000601091 IGHV3-72A0A0B4J1Y9 119 aa8.5□□□□□ -1.05
LIG1-220ENST00000601091 PGPA6NDG6 321 aa8.5□□□□□ -1.05
LIG1-220ENST00000601091 NUPR1O60356 82 aa8.5□□□□□ -1.05
LIG1-220ENST00000601091 IGHV3-48P01763 117 aa8.5□□□□□ -1.05
LIG1-220ENST00000601091 TNFRSF19Q9NS68 423 aa8.5□□□□□ -1.05
LIG1-220ENST00000601091 SLC25A15Q9Y619 301 aa8.5□□□□□ -1.05
LIG1-220ENST00000601091 F11RQ9Y624 299 aaKnown RBP8.5□□□□□ -1.05
LIG1-220ENST00000601091 IFITM1P13164 125 aa8.49□□□□□ -1.05
LIG1-220ENST00000601091 COL8A1P27658 744 aa8.49□□□□□ -1.05
LIG1-220ENST00000601091 SRIP30626 198 aa8.49□□□□□ -1.05
LIG1-220ENST00000601091 C4orf26Q17RF5 130 aa8.49□□□□□ -1.05
LIG1-220ENST00000601091 ASPHD1Q5U4P2 390 aa8.49□□□□□ -1.05
LIG1-220ENST00000601091 SPAG8Q99932 426 aaPredicted RBP8.49□□□□□ -1.05
LIG1-220ENST00000601091 CACNA1BQ00975 2339 aa8.49□□□□□ -1.05
LIG1-220ENST00000601091 A8MWL6 223 aa8.49□□□□□ -1.05
LIG1-220ENST00000601091 SERF1AO75920 110 aa8.49□□□□□ -1.05
LIG1-220ENST00000601091 AMY1AP04745 511 aa8.49□□□□□ -1.05
LIG1-220ENST00000601091 NBL1P41271 181 aa8.49□□□□□ -1.05
LIG1-220ENST00000601091 Q6ZR03 302 aa8.49□□□□□ -1.05
LIG1-220ENST00000601091 SPANXA1Q9NS26 97 aa8.49□□□□□ -1.05
LIG1-220ENST00000601091 ZNF355PQ9NSJ1 428 aa8.49□□□□□ -1.05
LIG1-220ENST00000601091 LINC00312Q9Y6C7 94 aa8.49□□□□□ -1.05
LIG1-220ENST00000601091 WNK2Q9Y3S1 2297 aa8.49□□□□□ -1.05
LIG1-220ENST00000601091 IGHV3-21A0A0B4J1V1 117 aa8.49□□□□□ -1.05
LIG1-220ENST00000601091 FAM236DA0A1B0GTK5 79 aa8.49□□□□□ -1.05
LIG1-220ENST00000601091 FAM236CP0DP71 79 aa8.49□□□□□ -1.05
LIG1-220ENST00000601091 EVI2AP22794 236 aa8.49□□□□□ -1.05
LIG1-220ENST00000601091 ADMP35318 185 aa8.49□□□□□ -1.05
LIG1-220ENST00000601091 PRCDQ00LT1 54 aa8.49□□□□□ -1.05
LIG1-220ENST00000601091 ACTL10Q5JWF8 245 aa8.49□□□□□ -1.05
LIG1-220ENST00000601091 OR9G1Q8NH87 305 aa8.49□□□□□ -1.05
LIG1-220ENST00000601091 FOXA2Q9Y261 457 aaPredicted RBP8.49□□□□□ -1.05
LIG1-220ENST00000601091 TTC28Q96AY4 2481 aa8.48□□□□□ -1.05
LIG1-220ENST00000601091 MED13LQ71F56 2210 aa8.48□□□□□ -1.05
LIG1-220ENST00000601091 A0A087X0K7 114 aa8.48□□□□□ -1.05
LIG1-220ENST00000601091 ZNF257Q9Y2Q1 563 aa8.48□□□□□ -1.05
LIG1-220ENST00000601091 APOMO95445 188 aa8.48□□□□□ -1.05
LIG1-220ENST00000601091 FAM106CPP0CH98 169 aa8.48□□□□□ -1.05
LIG1-220ENST00000601091 SAA1P0DJI8 122 aaPredicted RBP8.48□□□□□ -1.05
LIG1-220ENST00000601091 FAM106AQ4KMX7 169 aa8.48□□□□□ -1.05
LIG1-220ENST00000601091 SSBP3Q9BWW4 388 aaPredicted RBP8.48□□□□□ -1.05
LIG1-220ENST00000601091 AAMDCQ9H7C9 122 aa8.48□□□□□ -1.05
LIG1-220ENST00000601091 DCHS1Q96JQ0 3298 aa8.48□□□□□ -1.05
LIG1-220ENST00000601091 FCGR2BP31994 310 aaPredicted RBP8.48□□□□□ -1.05
LIG1-220ENST00000601091 ARPC1AQ92747 370 aa8.48□□□□□ -1.05
LIG1-220ENST00000601091 MRPL20Q9BYC9 149 aaKnown RBP8.48□□□□□ -1.05
LIG1-220ENST00000601091 RPUSD1Q9UJJ7 312 aaKnown RBP8.48□□□□□ -1.05
LIG1-220ENST00000601091 PMCHL1Q16048 86 aa8.47□□□□□ -1.05
LIG1-220ENST00000601091 TMEM78Q5T7P6 136 aa8.47□□□□□ -1.05
LIG1-220ENST00000601091 FBXL15Q9H469 300 aa8.47□□□□□ -1.05
LIG1-220ENST00000601091 MOSP00540 346 aa8.47□□□□□ -1.05
LIG1-220ENST00000601091 CRYGBP07316 175 aa8.47□□□□□ -1.05
LIG1-220ENST00000601091 CD69Q07108 199 aa8.47□□□□□ -1.05
LIG1-220ENST00000601091 PRADC1Q9BSG0 188 aa8.47□□□□□ -1.05
LIG1-220ENST00000601091 SPRY4Q9C004 299 aa8.47□□□□□ -1.05
LIG1-220ENST00000601091 TNCP24821 2201 aa8.47□□□□□ -1.05
LIG1-220ENST00000601091 AKAP6Q13023 2319 aa8.47□□□□□ -1.05
LIG1-220ENST00000601091 NPFFO15130 113 aa8.47□□□□□ -1.05
LIG1-220ENST00000601091 IGHV1-46P01743 117 aa8.47□□□□□ -1.05
LIG1-220ENST00000601091 HIST2H2BCQ6DN03 193 aa8.47□□□□□ -1.05
LIG1-220ENST00000601091 HIST2H2BDQ6DRA6 164 aa8.47□□□□□ -1.05
LIG1-220ENST00000601091 LCN12Q6JVE5 192 aa8.47□□□□□ -1.05
LIG1-220ENST00000601091 DTX2Q86UW9 622 aa8.47□□□□□ -1.05
LIG1-220ENST00000601091 OR2T6Q8NHC8 308 aa8.47□□□□□ -1.05
LIG1-220ENST00000601091 OSTCQ9NRP0 149 aa8.47□□□□□ -1.05
LIG1-220ENST00000601091 CCL3L1P16619 93 aa8.46□□□□□ -1.05
LIG1-220ENST00000601091 STHQ8IWL8 128 aa8.46□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms