RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 OR8I2Q8N0Y5 310 aa10.85□□□□□ -0.67
UPF1-211ENST00000600868 GPR82Q96P67 336 aa10.85□□□□□ -0.67
UPF1-211ENST00000600868 ACTR3CQ9C0K3 210 aaPredicted RBP10.85□□□□□ -0.67
UPF1-211ENST00000600868 SLC25A22Q9H936 323 aa10.85□□□□□ -0.67
UPF1-211ENST00000600868 TRRAPQ9Y4A5 3859 aa10.84□□□□□ -0.67
UPF1-211ENST00000600868 TRAV5A0A0B4J249 113 aa10.84□□□□□ -0.67
UPF1-211ENST00000600868 HELTA6NFD8 242 aa10.84□□□□□ -0.67
UPF1-211ENST00000600868 IGLV1-51P01701 117 aa10.84□□□□□ -0.67
UPF1-211ENST00000600868 RPL7P18124 248 aaKnown RBP10.84□□□□□ -0.67
UPF1-211ENST00000600868 CDC34P49427 236 aaPredicted RBP10.84□□□□□ -0.67
UPF1-211ENST00000600868 FAM90A2PQ658T7 463 aa10.84□□□□□ -0.67
UPF1-211ENST00000600868 LEMD1Q68G75 181 aa10.84□□□□□ -0.67
UPF1-211ENST00000600868 TCF24Q7RTU0 167 aa10.84□□□□□ -0.67
UPF1-211ENST00000600868 OR2K2Q8NGT1 345 aa10.84□□□□□ -0.67
UPF1-211ENST00000600868 FAM167A-AS1Q96KT0 104 aa10.84□□□□□ -0.67
UPF1-211ENST00000600868 GPR61Q9BZJ8 451 aa10.84□□□□□ -0.67
UPF1-211ENST00000600868 TRAV25A0A0B4J276 109 aa10.83□□□□□ -0.68
UPF1-211ENST00000600868 CTXND1A0A1B0GTU2 59 aa10.83□□□□□ -0.68
UPF1-211ENST00000600868 WIPF1O43516 503 aa10.83□□□□□ -0.68
UPF1-211ENST00000600868 IGLL1P15814 213 aa10.83□□□□□ -0.68
UPF1-211ENST00000600868 GALR1P47211 349 aa10.83□□□□□ -0.68
UPF1-211ENST00000600868 TAS2R45P59539 299 aa10.83□□□□□ -0.68
UPF1-211ENST00000600868 TEX261Q6UWH6 196 aa10.83□□□□□ -0.68
UPF1-211ENST00000600868 ALKAL2Q6UX46 152 aa10.83□□□□□ -0.68
UPF1-211ENST00000600868 SIGLEC15Q6ZMC9 328 aa10.83□□□□□ -0.68
UPF1-211ENST00000600868 BPIFA4PQ86YQ2 179 aa10.83□□□□□ -0.68
UPF1-211ENST00000600868 STXBP6Q8NFX7 210 aa10.83□□□□□ -0.68
UPF1-211ENST00000600868 RAB24Q969Q5 203 aa10.83□□□□□ -0.68
UPF1-211ENST00000600868 SLC25A2Q9BXI2 301 aa10.83□□□□□ -0.68
UPF1-211ENST00000600868 TMEM14CQ9P0S9 112 aa10.83□□□□□ -0.68
UPF1-211ENST00000600868 MRPS12O15235 138 aaKnown RBP10.82□□□□□ -0.68
UPF1-211ENST00000600868 FHITP49789 147 aa10.82□□□□□ -0.68
UPF1-211ENST00000600868 ZNF726P1Q15940 193 aa10.82□□□□□ -0.68
UPF1-211ENST00000600868 CD300EQ496F6 205 aaPredicted RBP10.82□□□□□ -0.68
UPF1-211ENST00000600868 KHDC3LQ587J8 217 aa10.82□□□□□ -0.68
UPF1-211ENST00000600868 IFNA7P01567 189 aa10.81□□□□□ -0.68
UPF1-211ENST00000600868 STAG3L2P0CL84 134 aa10.81□□□□□ -0.68
UPF1-211ENST00000600868 STAG3L3P0CL85 134 aa10.81□□□□□ -0.68
UPF1-211ENST00000600868 GP9P14770 177 aa10.81□□□□□ -0.68
UPF1-211ENST00000600868 FAM74A1Q5RGS3 127 aa10.81□□□□□ -0.68
UPF1-211ENST00000600868 PQLC2Q6ZP29 291 aa10.81□□□□□ -0.68
UPF1-211ENST00000600868 RBPMS2Q6ZRY4 209 aaKnown RBP10.81□□□□□ -0.68
UPF1-211ENST00000600868 SSX7Q7RTT5 188 aa10.81□□□□□ -0.68
UPF1-211ENST00000600868 ZNF680Q8NEM1 530 aa10.81□□□□□ -0.68
UPF1-211ENST00000600868 FAM213BQ8TBF2 198 aa10.81□□□□□ -0.68
UPF1-211ENST00000600868 RNF141Q8WVD5 230 aa10.81□□□□□ -0.68
UPF1-211ENST00000600868 SMAD5-AS1Q9Y6J3 95 aa10.81□□□□□ -0.68
UPF1-211ENST00000600868 A0A087X0K7 114 aa10.8□□□□□ -0.68
UPF1-211ENST00000600868 TSPAN4O14817 238 aa10.8□□□□□ -0.68
UPF1-211ENST00000600868 IGLC2P0DOY2 106 aa10.8□□□□□ -0.68
UPF1-211ENST00000600868 RPL11P62913 178 aaKnown RBP10.8□□□□□ -0.68
UPF1-211ENST00000600868 TMEM61Q8N0U2 210 aa10.8□□□□□ -0.68
UPF1-211ENST00000600868 MBD3L1Q8WWY6 194 aa10.8□□□□□ -0.68
UPF1-211ENST00000600868 ZNF503Q96F45 646 aa10.8□□□□□ -0.68
UPF1-211ENST00000600868 PAXXQ9BUH6 204 aa10.8□□□□□ -0.68
UPF1-211ENST00000600868 OR51M1Q9H341 326 aa10.8□□□□□ -0.68
UPF1-211ENST00000600868 HRH4Q9H3N8 390 aa10.8□□□□□ -0.68
UPF1-211ENST00000600868 SELENOKQ9Y6D0 94 aa10.8□□□□□ -0.68
UPF1-211ENST00000600868 PKD1L1Q8TDX9 2849 aa10.8□□□□□ -0.68
UPF1-211ENST00000600868 TRAV2A0A0B4J234 112 aa10.79□□□□□ -0.68
UPF1-211ENST00000600868 MAP1LC3B2A6NCE7 125 aa10.79□□□□□ -0.68
UPF1-211ENST00000600868 ZNF785A8K8V0 405 aa10.79□□□□□ -0.68
UPF1-211ENST00000600868 HMGB3O15347 200 aaKnown RBP10.79□□□□□ -0.68
UPF1-211ENST00000600868 OR7C2O60412 319 aa10.79□□□□□ -0.68
UPF1-211ENST00000600868 EIF3GO75821 320 aaKnown RBP eCLIP10.79□□□□□ -0.68
UPF1-211ENST00000600868 CXorf1O96002 111 aa10.79□□□□□ -0.68
UPF1-211ENST00000600868 H2AFB1P0C5Y9 115 aa10.79□□□□□ -0.68
UPF1-211ENST00000600868 ARL14EPLP0DKL9 152 aa10.79□□□□□ -0.68
UPF1-211ENST00000600868 HIST1H1EP10412 219 aaKnown RBP10.79□□□□□ -0.68
UPF1-211ENST00000600868 ATF4P18848 351 aaPredicted RBP10.79□□□□□ -0.68
UPF1-211ENST00000600868 MEOX2P50222 304 aa10.79□□□□□ -0.68
UPF1-211ENST00000600868 PAFAH1B2P68402 229 aa10.79□□□□□ -0.68
UPF1-211ENST00000600868 LCN12Q6JVE5 192 aa10.79□□□□□ -0.68
UPF1-211ENST00000600868 C17orf77Q96MU5 243 aa10.79□□□□□ -0.68
UPF1-211ENST00000600868 SPAG8Q99932 426 aaPredicted RBP10.79□□□□□ -0.68
UPF1-211ENST00000600868 MAP1LC3BQ9GZQ8 125 aa10.79□□□□□ -0.68
UPF1-211ENST00000600868 MS4A6AQ9H2W1 248 aa10.79□□□□□ -0.68
UPF1-211ENST00000600868 NRN1Q9NPD7 142 aa10.79□□□□□ -0.68
UPF1-211ENST00000600868 IZUMO1RA6ND01 250 aa10.78□□□□□ -0.68
UPF1-211ENST00000600868 ZNF705EA8MWA4 302 aaPredicted RBP10.78□□□□□ -0.68
UPF1-211ENST00000600868 H3BQ15 152 aa10.78□□□□□ -0.68
UPF1-211ENST00000600868 PYYP10082 97 aa10.78□□□□□ -0.68
UPF1-211ENST00000600868 GUK1Q16774 197 aa10.78□□□□□ -0.68
UPF1-211ENST00000600868 OXLD1Q5BKU9 147 aa10.78□□□□□ -0.68
UPF1-211ENST00000600868 LCN15Q6UWW0 184 aa10.78□□□□□ -0.68
UPF1-211ENST00000600868 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa10.78□□□□□ -0.68
UPF1-211ENST00000600868 LRRC20Q8TCA0 184 aa10.78□□□□□ -0.68
UPF1-211ENST00000600868 SFT2D1Q8WV19 159 aa10.78□□□□□ -0.68
UPF1-211ENST00000600868 FXYD5Q96DB9 178 aa10.78□□□□□ -0.68
UPF1-211ENST00000600868 SAT2Q96F10 170 aaPredicted RBP10.78□□□□□ -0.68
UPF1-211ENST00000600868 NOTCH3Q9UM47 2321 aa10.78□□□□□ -0.68
UPF1-211ENST00000600868 IGKV3-7A0A075B6H7 116 aa10.77□□□□□ -0.69
UPF1-211ENST00000600868 TRAV1-1A0A0B4J248 108 aa10.77□□□□□ -0.69
UPF1-211ENST00000600868 NBEAP1P0C6P0 100 aa10.77□□□□□ -0.69
UPF1-211ENST00000600868 GCHFRP30047 84 aa10.77□□□□□ -0.69
UPF1-211ENST00000600868 UBE2L3P68036 154 aaKnown RBP10.77□□□□□ -0.69
UPF1-211ENST00000600868 BLOC1S1P78537 153 aa10.77□□□□□ -0.69
UPF1-211ENST00000600868 SAMD13Q5VXD3 122 aa10.77□□□□□ -0.69
UPF1-211ENST00000600868 GBGT1Q8N5D6 347 aa10.77□□□□□ -0.69
UPF1-211ENST00000600868 SUN5Q8TC36 379 aa10.77□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms