RNA–Protein interactions for RNA: ENST00000600733.5

SHKBP1-225, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5 BASIC

Gene SHKBP1, Length 2,284 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-225ENST00000600733 C17orf77Q96MU5 243 aa16.02■□□□□ 0.15
SHKBP1-225ENST00000600733 ASCL2Q99929 193 aa16.02■□□□□ 0.15
SHKBP1-225ENST00000600733 CLEC5AQ9NY25 188 aa16.02■□□□□ 0.15
SHKBP1-225ENST00000600733 TMEM14CQ9P0S9 112 aa16.02■□□□□ 0.15
SHKBP1-225ENST00000600733 C2orf70A6NJV1 201 aa16.01■□□□□ 0.15
SHKBP1-225ENST00000600733 K7EIM0 57 aa16.01■□□□□ 0.15
SHKBP1-225ENST00000600733 ZNF672Q499Z4 452 aaPredicted RBP16.01■□□□□ 0.15
SHKBP1-225ENST00000600733 RBPMS2Q6ZRY4 209 aaKnown RBP16.01■□□□□ 0.15
SHKBP1-225ENST00000600733 OR8B3Q8NGG8 313 aa16.01■□□□□ 0.15
SHKBP1-225ENST00000600733 OR8B2Q96RD0 313 aa16.01■□□□□ 0.15
SHKBP1-225ENST00000600733 BTF3P20290 206 aaKnown RBP16.01■□□□□ 0.15
SHKBP1-225ENST00000600733 SPATA12Q7Z6I5 190 aa16■□□□□ 0.15
SHKBP1-225ENST00000600733 HILPDAQ9Y5L2 63 aa16■□□□□ 0.15
SHKBP1-225ENST00000600733 NPIPB6E9PJ23 425 aa15.99■□□□□ 0.15
SHKBP1-225ENST00000600733 FOXC1Q12948 553 aa15.99■□□□□ 0.15
SHKBP1-225ENST00000600733 GFRA4Q9GZZ7 299 aa15.99■□□□□ 0.15
SHKBP1-225ENST00000600733 S4R3C0 116 aa15.99■□□□□ 0.15
SHKBP1-225ENST00000600733 NBASA2RRP1 2371 aa15.99■□□□□ 0.15
SHKBP1-225ENST00000600733 HNRNPA3P51991 378 aaKnown RBP15.99■□□□□ 0.15
SHKBP1-225ENST00000600733 KLF17Q5JT82 389 aaPredicted RBP15.99■□□□□ 0.15
SHKBP1-225ENST00000600733 SOX21Q9Y651 276 aaPredicted RBP15.99■□□□□ 0.15
SHKBP1-225ENST00000600733 ZNF785A8K8V0 405 aa15.98■□□□□ 0.15
SHKBP1-225ENST00000600733 DLEU1O43261 78 aa15.98■□□□□ 0.15
SHKBP1-225ENST00000600733 ARF6P62330 175 aa15.98■□□□□ 0.15
SHKBP1-225ENST00000600733 FAM120AOSQ5T036 256 aa15.98■□□□□ 0.15
SHKBP1-225ENST00000600733 RBM14Q96PK6 669 aaKnown RBP15.98■□□□□ 0.15
SHKBP1-225ENST00000600733 HOXB4P17483 251 aaPredicted RBP15.98■□□□□ 0.15
SHKBP1-225ENST00000600733 NBL1P41271 181 aa15.98■□□□□ 0.15
SHKBP1-225ENST00000600733 FBLN7Q53RD9 439 aa15.98■□□□□ 0.15
SHKBP1-225ENST00000600733 KLHDC1Q8N7A1 406 aa15.98■□□□□ 0.15
SHKBP1-225ENST00000600733 RNF5Q99942 180 aa15.98■□□□□ 0.15
SHKBP1-225ENST00000600733 HRNRQ86YZ3 2850 aaPredicted RBP15.97■□□□□ 0.15
SHKBP1-225ENST00000600733 TRBV19A0A075B6N1 114 aa15.97■□□□□ 0.15
SHKBP1-225ENST00000600733 LIPFP07098 398 aa15.97■□□□□ 0.15
SHKBP1-225ENST00000600733 NPSP0C0P6 89 aa15.97■□□□□ 0.15
SHKBP1-225ENST00000600733 COL5A1-AS1Q5SY13 56 aa15.97■□□□□ 0.15
SHKBP1-225ENST00000600733 SHANK2-AS3Q9BTD1 123 aa15.97■□□□□ 0.15
SHKBP1-225ENST00000600733 K7ENP7 123 aa15.97■□□□□ 0.15
SHKBP1-225ENST00000600733 KLRD1Q13241 179 aa15.97■□□□□ 0.15
SHKBP1-225ENST00000600733 BPIFA4PQ86YQ2 179 aa15.97■□□□□ 0.15
SHKBP1-225ENST00000600733 ZC2HC1AQ96GY0 325 aa15.97■□□□□ 0.15
SHKBP1-225ENST00000600733 SCNM1Q9BWG6 230 aa15.97■□□□□ 0.15
SHKBP1-225ENST00000600733 CHEK1O14757 476 aa15.96■□□□□ 0.15
SHKBP1-225ENST00000600733 HTR1DP28221 377 aa15.96■□□□□ 0.15
SHKBP1-225ENST00000600733 LINC00173Q6ZV60 143 aa15.96■□□□□ 0.15
SHKBP1-225ENST00000600733 STPG4Q8N801 248 aa15.96■□□□□ 0.15
SHKBP1-225ENST00000600733 ZNF491Q8N8L2 437 aa15.96■□□□□ 0.15
SHKBP1-225ENST00000600733 LAMTOR2Q9Y2Q5 125 aa15.96■□□□□ 0.15
SHKBP1-225ENST00000600733 SVEP1Q4LDE5 3571 aa15.96■□□□□ 0.15
SHKBP1-225ENST00000600733 TRAV9-2A0A087WT02 112 aa15.96■□□□□ 0.14
SHKBP1-225ENST00000600733 LOC102724200A0A096LPH7 203 aaPredicted RBP15.96■□□□□ 0.14
SHKBP1-225ENST00000600733 IGHV1-24A0A0C4DH33 117 aa15.96■□□□□ 0.14
SHKBP1-225ENST00000600733 H3BRN7 92 aa15.96■□□□□ 0.14
SHKBP1-225ENST00000600733 NBR2O15453 112 aa15.96■□□□□ 0.14
SHKBP1-225ENST00000600733 APOHP02749 345 aaPredicted RBP15.96■□□□□ 0.14
SHKBP1-225ENST00000600733 IL4P05112 153 aa15.96■□□□□ 0.14
SHKBP1-225ENST00000600733 CYB5R2Q6BCY4 276 aa15.96■□□□□ 0.14
SHKBP1-225ENST00000600733 BCL6BQ8N143 479 aaPredicted RBP15.96■□□□□ 0.14
SHKBP1-225ENST00000600733 LY6G5BQ8NDX9 201 aa15.96■□□□□ 0.14
SHKBP1-225ENST00000600733 A0A1W2PRD5 423 aa15.95■□□□□ 0.14
SHKBP1-225ENST00000600733 A0A1W2PRF3 423 aa15.95■□□□□ 0.14
SHKBP1-225ENST00000600733 A0A1W2PRM7 423 aa15.95■□□□□ 0.14
SHKBP1-225ENST00000600733 FAM231BA6NCW3 169 aa15.95■□□□□ 0.14
SHKBP1-225ENST00000600733 OVOL3O00110 214 aa15.95■□□□□ 0.14
SHKBP1-225ENST00000600733 SIGLEC15Q6ZMC9 328 aa15.95■□□□□ 0.14
SHKBP1-225ENST00000600733 OR4F17Q8NGA8 305 aa15.95■□□□□ 0.14
SHKBP1-225ENST00000600733 RNF125Q96EQ8 232 aa15.95■□□□□ 0.14
SHKBP1-225ENST00000600733 SRSF8Q9BRL6 282 aaKnown RBP15.95■□□□□ 0.14
SHKBP1-225ENST00000600733 IGLL1P15814 213 aa15.94■□□□□ 0.14
SHKBP1-225ENST00000600733 TSPOP30536 169 aa15.94■□□□□ 0.14
SHKBP1-225ENST00000600733 ZNF138P52744 262 aa15.94■□□□□ 0.14
SHKBP1-225ENST00000600733 CFHR4Q92496 578 aa15.94■□□□□ 0.14
SHKBP1-225ENST00000600733 TMEM70Q9BUB7 260 aa15.94■□□□□ 0.14
SHKBP1-225ENST00000600733 DPM3Q9P2X0 92 aa15.94■□□□□ 0.14
SHKBP1-225ENST00000600733 ASH1LQ9NR48 2969 aaKnown RBP15.94■□□□□ 0.14
SHKBP1-225ENST00000600733 HLA-DRB1P01911 266 aa15.94■□□□□ 0.14
SHKBP1-225ENST00000600733 C16orf54Q6UWD8 224 aa15.94■□□□□ 0.14
SHKBP1-225ENST00000600733 GOLT1BQ9Y3E0 138 aa15.94■□□□□ 0.14
SHKBP1-225ENST00000600733 FCGR2BP31994 310 aaPredicted RBP15.93■□□□□ 0.14
SHKBP1-225ENST00000600733 CDSNQ15517 529 aa15.93■□□□□ 0.14
SHKBP1-225ENST00000600733 M0R3E3 92 aa15.93■□□□□ 0.14
SHKBP1-225ENST00000600733 HAX1O00165 279 aa15.93■□□□□ 0.14
SHKBP1-225ENST00000600733 HES1Q14469 280 aa15.93■□□□□ 0.14
SHKBP1-225ENST00000600733 CHCHD1Q96BP2 118 aaKnown RBP15.93■□□□□ 0.14
SHKBP1-225ENST00000600733 ARMS2P0C7Q2 107 aa15.92■□□□□ 0.14
SHKBP1-225ENST00000600733 LINC00614P0C842 121 aa15.92■□□□□ 0.14
SHKBP1-225ENST00000600733 GAGE1Q13065 139 aa15.92■□□□□ 0.14
SHKBP1-225ENST00000600733 TMEM75Q8N9X5 138 aa15.92■□□□□ 0.14
SHKBP1-225ENST00000600733 OR11H6Q8NGC7 330 aa15.92■□□□□ 0.14
SHKBP1-225ENST00000600733 NDFIP1Q9BT67 221 aa15.92■□□□□ 0.14
SHKBP1-225ENST00000600733 PSG8Q9UQ74 426 aa15.92■□□□□ 0.14
SHKBP1-225ENST00000600733 MRPS12O15235 138 aaKnown RBP15.92■□□□□ 0.14
SHKBP1-225ENST00000600733 FAM162BQ5T6X4 162 aa15.92■□□□□ 0.14
SHKBP1-225ENST00000600733 ZNF414Q96IQ9 312 aa15.91■□□□□ 0.14
SHKBP1-225ENST00000600733 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP15.91■□□□□ 0.14
SHKBP1-225ENST00000600733 TRBV6-1A0A0K0K1D8 114 aa15.91■□□□□ 0.14
SHKBP1-225ENST00000600733 NDUFA3O95167 84 aa15.91■□□□□ 0.14
SHKBP1-225ENST00000600733 LEPROTL1O95214 131 aa15.91■□□□□ 0.14
SHKBP1-225ENST00000600733 HINT1P49773 126 aaPredicted RBP15.91■□□□□ 0.14
SHKBP1-225ENST00000600733 CRIP1P50238 77 aa15.91■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms