RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 LINC00305Q7Z4B0 112 aa14.42□□□□□ -0.1
UPF1-209ENST00000600310 GATAD1Q8WUU5 269 aa14.42□□□□□ -0.1
UPF1-209ENST00000600310 NRN1Q9NPD7 142 aa14.42□□□□□ -0.1
UPF1-209ENST00000600310 DNAH3Q8TD57 4116 aa14.42□□□□□ -0.1
UPF1-209ENST00000600310 PRKDCP78527 4128 aaKnown RBP14.41□□□□□ -0.1
UPF1-209ENST00000600310 A0A1B0GVG6 124 aa14.41□□□□□ -0.1
UPF1-209ENST00000600310 IGHV4-30-4P0DP06 118 aa14.41□□□□□ -0.1
UPF1-209ENST00000600310 RPL7P18124 248 aaKnown RBP14.41□□□□□ -0.1
UPF1-209ENST00000600310 GALR1P47211 349 aa14.41□□□□□ -0.1
UPF1-209ENST00000600310 ODF3L2Q3SX64 289 aa14.41□□□□□ -0.1
UPF1-209ENST00000600310 FAM24BQ8N5W8 94 aa14.4□□□□□ -0.1
UPF1-209ENST00000600310 DEFB125Q8N687 156 aa14.4□□□□□ -0.1
UPF1-209ENST00000600310 WFDC10AQ9H1F0 79 aa14.4□□□□□ -0.1
UPF1-209ENST00000600310 UBQLN2Q9UHD9 624 aa14.4□□□□□ -0.1
UPF1-209ENST00000600310 TIMM9Q9Y5J7 89 aa14.4□□□□□ -0.1
UPF1-209ENST00000600310 TAAR5O14804 337 aa14.39□□□□□ -0.11
UPF1-209ENST00000600310 ZNF345Q14585 488 aa14.39□□□□□ -0.11
UPF1-209ENST00000600310 GCSAMLQ5JQS6 135 aa14.39□□□□□ -0.11
UPF1-209ENST00000600310 MORN5Q5VZ52 161 aa14.39□□□□□ -0.11
UPF1-209ENST00000600310 AKAP14Q86UN6 197 aa14.39□□□□□ -0.11
UPF1-209ENST00000600310 MAP6D1Q9H9H5 199 aa14.39□□□□□ -0.11
UPF1-209ENST00000600310 SEPSECSQ9HD40 501 aaKnown RBP14.39□□□□□ -0.11
UPF1-209ENST00000600310 MRPS12O15235 138 aaKnown RBP14.38□□□□□ -0.11
UPF1-209ENST00000600310 FFAR4Q5NUL3 377 aa14.38□□□□□ -0.11
UPF1-209ENST00000600310 RPL7L1Q6DKI1 246 aaKnown RBP14.38□□□□□ -0.11
UPF1-209ENST00000600310 KCNRGQ8N5I3 272 aa14.38□□□□□ -0.11
UPF1-209ENST00000600310 TUBA4BQ9H853 241 aa14.38□□□□□ -0.11
UPF1-209ENST00000600310 BORCS7-ASMTA0A0B4J1R7 106 aa14.37□□□□□ -0.11
UPF1-209ENST00000600310 SOCS3O14543 225 aa14.37□□□□□ -0.11
UPF1-209ENST00000600310 MEOX2P50222 304 aa14.37□□□□□ -0.11
UPF1-209ENST00000600310 DEFB131AP59861 70 aa14.37□□□□□ -0.11
UPF1-209ENST00000600310 HSD17B11Q8NBQ5 300 aa14.37□□□□□ -0.11
UPF1-209ENST00000600310 C17orf77Q96MU5 243 aa14.37□□□□□ -0.11
UPF1-209ENST00000600310 SRD5A3Q9H8P0 318 aa14.37□□□□□ -0.11
UPF1-209ENST00000600310 RFNGQ9Y644 331 aa14.37□□□□□ -0.11
UPF1-209ENST00000600310 A0A0D9SG52 128 aa14.36□□□□□ -0.11
UPF1-209ENST00000600310 FRMD6-AS1P0C7T7 363 aa14.36□□□□□ -0.11
UPF1-209ENST00000600310 ZNF688P0C7X2 276 aa14.36□□□□□ -0.11
UPF1-209ENST00000600310 CXCL2P19875 107 aa14.36□□□□□ -0.11
UPF1-209ENST00000600310 ATP6V0CP27449 155 aa14.36□□□□□ -0.11
UPF1-209ENST00000600310 FAM78BQ5VT40 261 aa14.36□□□□□ -0.11
UPF1-209ENST00000600310 SAMD13Q5VXD3 122 aa14.36□□□□□ -0.11
UPF1-209ENST00000600310 BPIFA4PQ86YQ2 179 aa14.36□□□□□ -0.11
UPF1-209ENST00000600310 CITED4Q96RK1 184 aa14.36□□□□□ -0.11
UPF1-209ENST00000600310 PSMG3Q9BT73 122 aaPredicted RBP14.36□□□□□ -0.11
UPF1-209ENST00000600310 CYTL1Q9NRR1 136 aa14.36□□□□□ -0.11
UPF1-209ENST00000600310 A0A087X0K7 114 aa14.35□□□□□ -0.11
UPF1-209ENST00000600310 TRAV5A0A0B4J249 113 aa14.35□□□□□ -0.11
UPF1-209ENST00000600310 JTBO76095 146 aa14.35□□□□□ -0.11
UPF1-209ENST00000600310 C1QBP02746 253 aa14.35□□□□□ -0.11
UPF1-209ENST00000600310 ATF4P18848 351 aaPredicted RBP14.35□□□□□ -0.11
UPF1-209ENST00000600310 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa14.35□□□□□ -0.11
UPF1-209ENST00000600310 LINC00322Q6ZN03 302 aaPredicted RBP14.35□□□□□ -0.11
UPF1-209ENST00000600310 APRG1Q8IVJ8 170 aa14.35□□□□□ -0.11
UPF1-209ENST00000600310 OR2G3Q8NGZ4 309 aa14.35□□□□□ -0.11
UPF1-209ENST00000600310 B9D2Q9BPU9 175 aa14.35□□□□□ -0.11
UPF1-209ENST00000600310 MRPL32Q9BYC8 188 aaKnown RBP14.35□□□□□ -0.11
UPF1-209ENST00000600310 ID1P41134 155 aa14.34□□□□□ -0.11
UPF1-209ENST00000600310 PSMB3P49720 205 aa14.34□□□□□ -0.11
UPF1-209ENST00000600310 SNRPD3P62318 126 aaKnown RBP14.34□□□□□ -0.11
UPF1-209ENST00000600310 ACOT6Q3I5F7 207 aaPredicted RBP14.34□□□□□ -0.11
UPF1-209ENST00000600310 GNPNAT1Q96EK6 184 aaPredicted RBP14.34□□□□□ -0.11
UPF1-209ENST00000600310 ARPC5LQ9BPX5 153 aa14.34□□□□□ -0.11
UPF1-209ENST00000600310 RBMY1BA6NDE4 496 aaKnown RBP14.33□□□□□ -0.12
UPF1-209ENST00000600310 RBMY1EA6NEQ0 496 aaKnown RBP14.33□□□□□ -0.12
UPF1-209ENST00000600310 ISLRO14498 428 aa14.33□□□□□ -0.12
UPF1-209ENST00000600310 RBMY1DP0C7P1 496 aaKnown RBP14.33□□□□□ -0.12
UPF1-209ENST00000600310 M6PRP20645 277 aa14.33□□□□□ -0.12
UPF1-209ENST00000600310 SERF2P84101 59 aa14.33□□□□□ -0.12
UPF1-209ENST00000600310 ZNF124Q15973 351 aa14.33□□□□□ -0.12
UPF1-209ENST00000600310 PSMG4Q5JS54 123 aa14.33□□□□□ -0.12
UPF1-209ENST00000600310 SPATA31B1PQ5VZV4 182 aa14.33□□□□□ -0.12
UPF1-209ENST00000600310 MIR17HGQ75NE6 70 aa14.33□□□□□ -0.12
UPF1-209ENST00000600310 TMEM14CQ9P0S9 112 aa14.33□□□□□ -0.12
UPF1-209ENST00000600310 FUT9Q9Y231 359 aa14.33□□□□□ -0.12
UPF1-209ENST00000600310 IGLC2P0DOY2 106 aa14.32□□□□□ -0.12
UPF1-209ENST00000600310 FAM167A-AS1Q96KT0 104 aa14.32□□□□□ -0.12
UPF1-209ENST00000600310 C16orf92Q96LL3 132 aa14.32□□□□□ -0.12
UPF1-209ENST00000600310 HYLS1Q96M11 299 aa14.32□□□□□ -0.12
UPF1-209ENST00000600310 SH3BGRL3Q9H299 93 aa14.32□□□□□ -0.12
UPF1-209ENST00000600310 HRH4Q9H3N8 390 aa14.32□□□□□ -0.12
UPF1-209ENST00000600310 KANTRA0A1W2PQU2 76 aa14.31□□□□□ -0.12
UPF1-209ENST00000600310 RHOBP62745 196 aa14.31□□□□□ -0.12
UPF1-209ENST00000600310 CD300CQ08708 224 aa14.31□□□□□ -0.12
UPF1-209ENST00000600310 LINC00052Q96N35 136 aa14.31□□□□□ -0.12
UPF1-209ENST00000600310 SLC25A2Q9BXI2 301 aa14.31□□□□□ -0.12
UPF1-209ENST00000600310 LOC102724200A0A096LPH7 203 aaPredicted RBP14.3□□□□□ -0.12
UPF1-209ENST00000600310 TRAV8-2A0A0B4J237 113 aa14.3□□□□□ -0.12
UPF1-209ENST00000600310 H3BQ15 152 aa14.3□□□□□ -0.12
UPF1-209ENST00000600310 BCL2L11O43521 198 aa14.3□□□□□ -0.12
UPF1-209ENST00000600310 RAB2AP61019 212 aa14.3□□□□□ -0.12
UPF1-209ENST00000600310 LGALSLQ3ZCW2 172 aaPredicted RBP14.3□□□□□ -0.12
UPF1-209ENST00000600310 TMUB2Q71RG4 321 aa14.3□□□□□ -0.12
UPF1-209ENST00000600310 SBSPONQ8IVN8 264 aa14.3□□□□□ -0.12
UPF1-209ENST00000600310 MBP02144 154 aa14.29□□□□□ -0.12
UPF1-209ENST00000600310 HIST1H1EP10412 219 aaKnown RBP14.29□□□□□ -0.12
UPF1-209ENST00000600310 GUK1Q16774 197 aa14.29□□□□□ -0.12
UPF1-209ENST00000600310 LCN15Q6UWW0 184 aa14.29□□□□□ -0.12
UPF1-209ENST00000600310 OR10G4Q8NGN3 311 aa14.29□□□□□ -0.12
UPF1-209ENST00000600310 OR10G9Q8NGN4 311 aa14.29□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms