RNA–Protein interactions for RNA: ENST00000588109.5

LIG3-210, Transcript of DNA ligase 3, humanhuman

TSL 4

Gene LIG3, Length 592 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-210ENST00000588109 SERF2P84101 59 aa4.07□□□□□ -1.76
LIG3-210ENST00000588109 ACOT6Q3I5F7 207 aaPredicted RBP4.07□□□□□ -1.76
LIG3-210ENST00000588109 MAJINQ3KP22 176 aa4.07□□□□□ -1.76
LIG3-210ENST00000588109 FAM106AQ4KMX7 169 aa4.07□□□□□ -1.76
LIG3-210ENST00000588109 ALKAL2Q6UX46 152 aa4.07□□□□□ -1.76
LIG3-210ENST00000588109 TOMM20LQ6UXN7 152 aa4.07□□□□□ -1.76
LIG3-210ENST00000588109 NDUFA11Q86Y39 141 aa4.07□□□□□ -1.76
LIG3-210ENST00000588109 OR1L4Q8NGR5 311 aa4.07□□□□□ -1.76
LIG3-210ENST00000588109 TMED6Q8WW62 240 aa4.07□□□□□ -1.76
LIG3-210ENST00000588109 NARS2Q96I59 477 aaKnown RBP4.07□□□□□ -1.76
LIG3-210ENST00000588109 DUX3Q96PT4 197 aa4.07□□□□□ -1.76
LIG3-210ENST00000588109 PFDN5Q99471 154 aa4.07□□□□□ -1.76
LIG3-210ENST00000588109 ARV1Q9H2C2 271 aa4.07□□□□□ -1.76
LIG3-210ENST00000588109 SLC39A9Q9NUM3 307 aa4.07□□□□□ -1.76
LIG3-210ENST00000588109 RFNGQ9Y644 331 aa4.07□□□□□ -1.76
LIG3-210ENST00000588109 JMJD1CQ15652 2540 aa4.07□□□□□ -1.76
LIG3-210ENST00000588109 C2CD3Q4AC94 2353 aa4.07□□□□□ -1.76
LIG3-210ENST00000588109 NIPBLQ6KC79 2804 aaeCLIP4.06□□□□□ -1.76
LIG3-210ENST00000588109 TRGV11A0A075B6L2 103 aa4.06□□□□□ -1.76
LIG3-210ENST00000588109 A0A1W2PPV4 95 aa4.06□□□□□ -1.76
LIG3-210ENST00000588109 UMAD1C9J7I0 102 aa4.06□□□□□ -1.76
LIG3-210ENST00000588109 ZNF207O43670 478 aaKnown RBP4.06□□□□□ -1.76
LIG3-210ENST00000588109 IFNA7P01567 189 aa4.06□□□□□ -1.76
LIG3-210ENST00000588109 SYNJ2BPP57105 145 aa4.06□□□□□ -1.76
LIG3-210ENST00000588109 RAB2AP61019 212 aa4.06□□□□□ -1.76
LIG3-210ENST00000588109 USF2Q15853 346 aaPredicted RBP4.06□□□□□ -1.76
LIG3-210ENST00000588109 TMEM41BQ5BJD5 291 aa4.06□□□□□ -1.76
LIG3-210ENST00000588109 GCSAMLQ5JQS6 135 aa4.06□□□□□ -1.76
LIG3-210ENST00000588109 FAM74A1Q5RGS3 127 aa4.06□□□□□ -1.76
LIG3-210ENST00000588109 PXDC1Q5TGL8 231 aa4.06□□□□□ -1.76
LIG3-210ENST00000588109 C10orf113Q5VZT2 155 aa4.06□□□□□ -1.76
LIG3-210ENST00000588109 FAM122CQ6P4D5 195 aa4.06□□□□□ -1.76
LIG3-210ENST00000588109 TEX261Q6UWH6 196 aa4.06□□□□□ -1.76
LIG3-210ENST00000588109 S100A7AQ86SG5 101 aa4.06□□□□□ -1.76
LIG3-210ENST00000588109 GPHB5Q86YW7 130 aa4.06□□□□□ -1.76
LIG3-210ENST00000588109 OR4F17Q8NGA8 305 aa4.06□□□□□ -1.76
LIG3-210ENST00000588109 OR10G4Q8NGN3 311 aa4.06□□□□□ -1.76
LIG3-210ENST00000588109 OR10G9Q8NGN4 311 aa4.06□□□□□ -1.76
LIG3-210ENST00000588109 OR10G7Q8NGN6 311 aa4.06□□□□□ -1.76
LIG3-210ENST00000588109 TMEM190Q8WZ59 177 aa4.06□□□□□ -1.76
LIG3-210ENST00000588109 PHYHIPLQ96FC7 376 aa4.06□□□□□ -1.76
LIG3-210ENST00000588109 OR4F4Q96R69 305 aa4.06□□□□□ -1.76
LIG3-210ENST00000588109 METTL26Q96S19 204 aa4.06□□□□□ -1.76
LIG3-210ENST00000588109 CITED1Q99966 193 aa4.06□□□□□ -1.76
LIG3-210ENST00000588109 KRTAP4-2Q9BYR5 136 aa4.06□□□□□ -1.76
LIG3-210ENST00000588109 ACTR3CQ9C0K3 210 aaPredicted RBP4.06□□□□□ -1.76
LIG3-210ENST00000588109 DNAJC4Q9NNZ3 241 aa4.06□□□□□ -1.76
LIG3-210ENST00000588109 UBQLN2Q9UHD9 624 aa4.06□□□□□ -1.76
LIG3-210ENST00000588109 RABAC1Q9UI14 185 aa4.06□□□□□ -1.76
LIG3-210ENST00000588109 HIGD1AQ9Y241 93 aa4.06□□□□□ -1.76
LIG3-210ENST00000588109 UFC1Q9Y3C8 167 aa4.06□□□□□ -1.76
LIG3-210ENST00000588109 IGHV3-49A0A0A0MS15 119 aa4.05□□□□□ -1.76
LIG3-210ENST00000588109 IGHV3-66A0A0C4DH42 116 aa4.05□□□□□ -1.76
LIG3-210ENST00000588109 WI2-2373I1.2A0A1W2PRP0 233 aa4.05□□□□□ -1.76
LIG3-210ENST00000588109 ZNF705EA8MWA4 302 aaPredicted RBP4.05□□□□□ -1.76
LIG3-210ENST00000588109 M0QZ24 198 aa4.05□□□□□ -1.76
LIG3-210ENST00000588109 M6PRP20645 277 aa4.05□□□□□ -1.76
LIG3-210ENST00000588109 NPPCP23582 126 aa4.05□□□□□ -1.76
LIG3-210ENST00000588109 BMI1P35226 326 aa4.05□□□□□ -1.76
LIG3-210ENST00000588109 MYCNOSP40205 109 aa4.05□□□□□ -1.76
LIG3-210ENST00000588109 CDC34P49427 236 aaPredicted RBP4.05□□□□□ -1.76
LIG3-210ENST00000588109 RAB5CP51148 216 aa4.05□□□□□ -1.76
LIG3-210ENST00000588109 RIPPLY3P57055 190 aa4.05□□□□□ -1.76
LIG3-210ENST00000588109 RAB14P61106 215 aa4.05□□□□□ -1.76
LIG3-210ENST00000588109 RHOBP62745 196 aa4.05□□□□□ -1.76
LIG3-210ENST00000588109 FAM78BQ5VT40 261 aa4.05□□□□□ -1.76
LIG3-210ENST00000588109 UNQ9165/PRO28630Q6UXU0 137 aa4.05□□□□□ -1.76
LIG3-210ENST00000588109 DPPA3Q6W0C5 159 aa4.05□□□□□ -1.76
LIG3-210ENST00000588109 LINC00305Q7Z4B0 112 aa4.05□□□□□ -1.76
LIG3-210ENST00000588109 ZNF680Q8NEM1 530 aa4.05□□□□□ -1.76
LIG3-210ENST00000588109 FAM213BQ8TBF2 198 aa4.05□□□□□ -1.76
LIG3-210ENST00000588109 GATAD1Q8WUU5 269 aa4.05□□□□□ -1.76
LIG3-210ENST00000588109 TMEM37Q8WXS4 190 aa4.05□□□□□ -1.76
LIG3-210ENST00000588109 GRAMD2BQ96HH9 432 aa4.05□□□□□ -1.76
LIG3-210ENST00000588109 UHRF2Q96PU4 802 aa4.05□□□□□ -1.76
LIG3-210ENST00000588109 RNF2Q99496 336 aa4.05□□□□□ -1.76
LIG3-210ENST00000588109 MRPL32Q9BYC8 188 aaKnown RBP4.05□□□□□ -1.76
LIG3-210ENST00000588109 VSIRQ9H7M9 311 aa4.05□□□□□ -1.76
LIG3-210ENST00000588109 SLC25A22Q9H936 323 aa4.05□□□□□ -1.76
LIG3-210ENST00000588109 DAZ1Q9NQZ3 744 aaKnown RBP4.05□□□□□ -1.76
LIG3-210ENST00000588109 RPRMQ9NS64 109 aa4.05□□□□□ -1.76
LIG3-210ENST00000588109 PEMTQ9UBM1 199 aa4.05□□□□□ -1.76
LIG3-210ENST00000588109 DKK2Q9UBU2 259 aa4.05□□□□□ -1.76
LIG3-210ENST00000588109 RNF24Q9Y225 148 aa4.05□□□□□ -1.76
LIG3-210ENST00000588109 NF1P21359 2839 aa4.05□□□□□ -1.76
LIG3-210ENST00000588109 SETD2Q9BYW2 2564 aaPredicted RBP4.04□□□□□ -1.76
LIG3-210ENST00000588109 IGHV3OR16-13A0A075B7E8 117 aa4.04□□□□□ -1.76
LIG3-210ENST00000588109 IGHV3-74A0A0B4J1X5 117 aa4.04□□□□□ -1.76
LIG3-210ENST00000588109 IGHV7-4-1A0A0J9YVY3 117 aa4.04□□□□□ -1.76
LIG3-210ENST00000588109 A0A1B0GV50 99 aa4.04□□□□□ -1.76
LIG3-210ENST00000588109 A0A1W2PS18 150 aa4.04□□□□□ -1.76
LIG3-210ENST00000588109 ZNF785A8K8V0 405 aa4.04□□□□□ -1.76
LIG3-210ENST00000588109 TEX46H3BTG2 121 aa4.04□□□□□ -1.76
LIG3-210ENST00000588109 K7EMT4 169 aa4.04□□□□□ -1.76
LIG3-210ENST00000588109 LGALS9O00182 355 aa4.04□□□□□ -1.76
LIG3-210ENST00000588109 OVOL1O14753 267 aa4.04□□□□□ -1.76
LIG3-210ENST00000588109 HMGB3O15347 200 aaKnown RBP4.04□□□□□ -1.76
LIG3-210ENST00000588109 OR7C2O60412 319 aa4.04□□□□□ -1.76
LIG3-210ENST00000588109 EIF3GO75821 320 aaKnown RBP eCLIP4.04□□□□□ -1.76
LIG3-210ENST00000588109 FHITP49789 147 aa4.04□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms