RNA–Protein interactions for RNA: ENST00000588059.5

VPS4B-202, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 5

Gene VPS4B, Length 1,252 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-202ENST00000588059 NUDT15Q9NV35 164 aa7.79□□□□□ -1.16
VPS4B-202ENST00000588059 PSENENQ9NZ42 101 aa7.79□□□□□ -1.16
VPS4B-202ENST00000588059 GSKIPQ9P0R6 139 aa7.79□□□□□ -1.16
VPS4B-202ENST00000588059 STRAPQ9Y3F4 350 aaKnown RBP7.79□□□□□ -1.16
VPS4B-202ENST00000588059 FAM240BA0A1B0GVZ2 78 aa7.78□□□□□ -1.16
VPS4B-202ENST00000588059 FAM25EA8MYX2 175 aa7.78□□□□□ -1.16
VPS4B-202ENST00000588059 H2AFB2P0C5Z0 115 aa7.78□□□□□ -1.16
VPS4B-202ENST00000588059 AP2S1P53680 142 aaPredicted RBP7.78□□□□□ -1.16
VPS4B-202ENST00000588059 FXYD7P58549 80 aa7.78□□□□□ -1.16
VPS4B-202ENST00000588059 LYZP61626 148 aa7.78□□□□□ -1.16
VPS4B-202ENST00000588059 ID3Q02535 119 aa7.78□□□□□ -1.16
VPS4B-202ENST00000588059 GDF5OSQ5U4N7 250 aa7.78□□□□□ -1.16
VPS4B-202ENST00000588059 MZT2BQ6NZ67 158 aa7.78□□□□□ -1.16
VPS4B-202ENST00000588059 LINC00299Q6ZSB3 139 aa7.78□□□□□ -1.16
VPS4B-202ENST00000588059 C15orf53Q8NAA6 179 aa7.78□□□□□ -1.16
VPS4B-202ENST00000588059 OR4D5Q8NGN0 318 aa7.78□□□□□ -1.16
VPS4B-202ENST00000588059 MITD1Q8WV92 249 aa7.78□□□□□ -1.16
VPS4B-202ENST00000588059 RNF125Q96EQ8 232 aa7.78□□□□□ -1.16
VPS4B-202ENST00000588059 SEC22CQ9BRL7 303 aa7.78□□□□□ -1.16
VPS4B-202ENST00000588059 ATG101Q9BSB4 218 aa7.78□□□□□ -1.16
VPS4B-202ENST00000588059 NRN1Q9NPD7 142 aa7.78□□□□□ -1.16
VPS4B-202ENST00000588059 YTHDF2Q9Y5A9 579 aaKnown RBP7.78□□□□□ -1.16
VPS4B-202ENST00000588059 IGKV1D-37A0A075B6S9 117 aa7.77□□□□□ -1.17
VPS4B-202ENST00000588059 SMCO3A2RU48 225 aa7.77□□□□□ -1.17
VPS4B-202ENST00000588059 SNRPGP15A8MWD9 76 aa7.77□□□□□ -1.17
VPS4B-202ENST00000588059 CCSO14618 274 aa7.77□□□□□ -1.17
VPS4B-202ENST00000588059 DEFB1P60022 68 aa7.77□□□□□ -1.17
VPS4B-202ENST00000588059 AKR1C1Q04828 323 aa7.77□□□□□ -1.17
VPS4B-202ENST00000588059 ZNF846Q147U1 533 aa7.77□□□□□ -1.17
VPS4B-202ENST00000588059 OR8G2PQ6IF36 304 aa7.77□□□□□ -1.17
VPS4B-202ENST00000588059 ZNF709Q8N972 641 aa7.77□□□□□ -1.17
VPS4B-202ENST00000588059 ZBTB8BQ8NAP8 495 aaPredicted RBP7.77□□□□□ -1.17
VPS4B-202ENST00000588059 PPP1R14BQ96C90 147 aa7.77□□□□□ -1.17
VPS4B-202ENST00000588059 WDR12Q9GZL7 423 aaKnown RBP7.77□□□□□ -1.17
VPS4B-202ENST00000588059 PTTG2Q9NZH5 202 aa7.77□□□□□ -1.17
VPS4B-202ENST00000588059 PFDN2Q9UHV9 154 aa7.77□□□□□ -1.17
VPS4B-202ENST00000588059 LOC102723971A0A1B0GUV8 181 aa7.76□□□□□ -1.17
VPS4B-202ENST00000588059 C5orf51A6NDU8 294 aa7.76□□□□□ -1.17
VPS4B-202ENST00000588059 BUB3O43684 328 aa7.76□□□□□ -1.17
VPS4B-202ENST00000588059 IGKV3-20P01619 116 aa7.76□□□□□ -1.17
VPS4B-202ENST00000588059 NUP62P37198 522 aaPredicted RBP7.76□□□□□ -1.17
VPS4B-202ENST00000588059 DAD1P61803 113 aa7.76□□□□□ -1.17
VPS4B-202ENST00000588059 SIGLEC15Q6ZMC9 328 aa7.76□□□□□ -1.17
VPS4B-202ENST00000588059 ACOT7LQ6ZUV0 252 aa7.76□□□□□ -1.17
VPS4B-202ENST00000588059 ZNF431Q8TF32 576 aaPredicted RBP7.76□□□□□ -1.17
VPS4B-202ENST00000588059 TRGV9Q99603 122 aa7.76□□□□□ -1.17
VPS4B-202ENST00000588059 IGKV1OR2-108A0A075B7D4 117 aa7.75□□□□□ -1.17
VPS4B-202ENST00000588059 EPM2AB3EWF7 344 aa7.75□□□□□ -1.17
VPS4B-202ENST00000588059 PRSS46E5RG02 174 aa7.75□□□□□ -1.17
VPS4B-202ENST00000588059 L7N2F9 121 aa7.75□□□□□ -1.17
VPS4B-202ENST00000588059 METTL15P1P0C7V9 234 aa7.75□□□□□ -1.17
VPS4B-202ENST00000588059 KRTAP10-2P60368 255 aa7.75□□□□□ -1.17
VPS4B-202ENST00000588059 RRAS2P62070 204 aaPredicted RBP7.75□□□□□ -1.17
VPS4B-202ENST00000588059 VAMP2P63027 116 aa7.75□□□□□ -1.17
VPS4B-202ENST00000588059 ASAH1Q13510 395 aa7.75□□□□□ -1.17
VPS4B-202ENST00000588059 C1orf158Q8N1D5 194 aa7.75□□□□□ -1.17
VPS4B-202ENST00000588059 C12orf45Q8N5I9 185 aaPredicted RBP7.75□□□□□ -1.17
VPS4B-202ENST00000588059 THAP8Q8NA92 274 aa7.75□□□□□ -1.17
VPS4B-202ENST00000588059 ENKURQ8TC29 256 aa7.75□□□□□ -1.17
VPS4B-202ENST00000588059 SMIM8Q96KF7 97 aa7.75□□□□□ -1.17
VPS4B-202ENST00000588059 CLUHP3Q96NS8 147 aa7.75□□□□□ -1.17
VPS4B-202ENST00000588059 UPK1BO75841 260 aa7.74□□□□□ -1.17
VPS4B-202ENST00000588059 CCNKO75909 580 aa7.74□□□□□ -1.17
VPS4B-202ENST00000588059 HBE1P02100 147 aa7.74□□□□□ -1.17
VPS4B-202ENST00000588059 MBPP02686 304 aaPredicted RBP7.74□□□□□ -1.17
VPS4B-202ENST00000588059 GATA2P23769 480 aaPredicted RBP7.74□□□□□ -1.17
VPS4B-202ENST00000588059 PAX9P55771 341 aa7.74□□□□□ -1.17
VPS4B-202ENST00000588059 GSG1LQ6UXU4 331 aa7.74□□□□□ -1.17
VPS4B-202ENST00000588059 FOXI2Q6ZQN5 318 aa7.74□□□□□ -1.17
VPS4B-202ENST00000588059 SLC35B3Q9H1N7 401 aa7.74□□□□□ -1.17
VPS4B-202ENST00000588059 SAV1Q9H4B6 383 aaPredicted RBP7.74□□□□□ -1.17
VPS4B-202ENST00000588059 RCL1Q9Y2P8 373 aaKnown RBP7.74□□□□□ -1.17
VPS4B-202ENST00000588059 GOLT1BQ9Y3E0 138 aa7.74□□□□□ -1.17
VPS4B-202ENST00000588059 LSM5Q9Y4Y9 91 aaKnown RBP7.74□□□□□ -1.17
VPS4B-202ENST00000588059 TSC22D2O75157 780 aa7.73□□□□□ -1.17
VPS4B-202ENST00000588059 CFDP00746 253 aaPredicted RBP7.73□□□□□ -1.17
VPS4B-202ENST00000588059 INAFM2P0DMQ5 153 aa7.73□□□□□ -1.17
VPS4B-202ENST00000588059 ORM2P19652 201 aa7.73□□□□□ -1.17
VPS4B-202ENST00000588059 BCAP31P51572 246 aa7.73□□□□□ -1.17
VPS4B-202ENST00000588059 TAS2R30P59541 319 aa7.73□□□□□ -1.17
VPS4B-202ENST00000588059 RRN3P1Q2M238 152 aa7.73□□□□□ -1.17
VPS4B-202ENST00000588059 TMEM144Q7Z5S9 345 aa7.73□□□□□ -1.17
VPS4B-202ENST00000588059 OR8I2Q8N0Y5 310 aa7.73□□□□□ -1.17
VPS4B-202ENST00000588059 BPIFCQ8NFQ6 507 aa7.73□□□□□ -1.17
VPS4B-202ENST00000588059 OR10P1Q8NGE3 313 aa7.73□□□□□ -1.17
VPS4B-202ENST00000588059 OR1B1Q8NGR6 318 aa7.73□□□□□ -1.17
VPS4B-202ENST00000588059 BATF3Q9NR55 127 aa7.73□□□□□ -1.17
VPS4B-202ENST00000588059 MGAT4CQ9UBM8 478 aa7.73□□□□□ -1.17
VPS4B-202ENST00000588059 LINC00588Q9Y4M8 146 aa7.73□□□□□ -1.17
VPS4B-202ENST00000588059 MYCBP2O75592 4640 aa7.73□□□□□ -1.17
VPS4B-202ENST00000588059 FAT1Q14517 4588 aa7.73□□□□□ -1.17
VPS4B-202ENST00000588059 C7orf66A4D0T2 115 aa7.72□□□□□ -1.17
VPS4B-202ENST00000588059 PMS2P5A8MQ11 134 aa7.72□□□□□ -1.17
VPS4B-202ENST00000588059 IL5P05113 134 aa7.72□□□□□ -1.17
VPS4B-202ENST00000588059 S100A10P60903 97 aa7.72□□□□□ -1.17
VPS4B-202ENST00000588059 DLK1P80370 383 aa7.72□□□□□ -1.17
VPS4B-202ENST00000588059 IFITM3Q01628 133 aa7.72□□□□□ -1.17
VPS4B-202ENST00000588059 C1orf194Q5T5A4 169 aa7.72□□□□□ -1.17
VPS4B-202ENST00000588059 TMEM14EPQ6UXP3 125 aa7.72□□□□□ -1.17
VPS4B-202ENST00000588059 TMEM182Q6ZP80 229 aaPredicted RBP7.72□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms