RNA–Protein interactions for RNA: ENST00000586457.1

CLIP3-203, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 1 (best)

Gene CLIP3, Length 433 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-203ENST00000586457 NMES1Q9C002 83 aa8□□□□□ -1.13
CLIP3-203ENST00000586457 LYRM2Q9NU23 88 aaPredicted RBP8□□□□□ -1.13
CLIP3-203ENST00000586457 PPP1R14DQ9NXH3 145 aa8□□□□□ -1.13
CLIP3-203ENST00000586457 ELOA3CA0A087WX78 387 aaPredicted RBP7.99□□□□□ -1.13
CLIP3-203ENST00000586457 E5RGE8 158 aa7.99□□□□□ -1.13
CLIP3-203ENST00000586457 IFITM3Q01628 133 aa7.99□□□□□ -1.13
CLIP3-203ENST00000586457 PMS2P11Q13670 270 aa7.99□□□□□ -1.13
CLIP3-203ENST00000586457 C10orf113Q5VZT2 155 aa7.99□□□□□ -1.13
CLIP3-203ENST00000586457 ZNF709Q8N972 641 aa7.99□□□□□ -1.13
CLIP3-203ENST00000586457 OR1L4Q8NGR5 311 aa7.99□□□□□ -1.13
CLIP3-203ENST00000586457 SHANK2-AS3Q9BTD1 123 aa7.99□□□□□ -1.13
CLIP3-203ENST00000586457 SCRT1Q9BWW7 348 aa7.99□□□□□ -1.13
CLIP3-203ENST00000586457 ARV1Q9H2C2 271 aa7.99□□□□□ -1.13
CLIP3-203ENST00000586457 SLC25A32Q9H2D1 315 aa7.99□□□□□ -1.13
CLIP3-203ENST00000586457 UBE2L5PA0A1B0GUS4 154 aa7.98□□□□□ -1.13
CLIP3-203ENST00000586457 H3BMM0 161 aa7.98□□□□□ -1.13
CLIP3-203ENST00000586457 JTBO76095 146 aa7.98□□□□□ -1.13
CLIP3-203ENST00000586457 PLP1P60201 277 aa7.98□□□□□ -1.13
CLIP3-203ENST00000586457 ARL16Q0P5N6 197 aa7.98□□□□□ -1.13
CLIP3-203ENST00000586457 FOXI2Q6ZQN5 318 aa7.98□□□□□ -1.13
CLIP3-203ENST00000586457 LINC00305Q7Z4B0 112 aa7.98□□□□□ -1.13
CLIP3-203ENST00000586457 TMEM252Q8N6L7 170 aa7.98□□□□□ -1.13
CLIP3-203ENST00000586457 UHRF2Q96PU4 802 aa7.98□□□□□ -1.13
CLIP3-203ENST00000586457 PFDN5Q99471 154 aa7.98□□□□□ -1.13
CLIP3-203ENST00000586457 MFFQ9GZY8 342 aa7.98□□□□□ -1.13
CLIP3-203ENST00000586457 DNAJC4Q9NNZ3 241 aa7.98□□□□□ -1.13
CLIP3-203ENST00000586457 KLK5Q9Y337 293 aaPredicted RBP7.98□□□□□ -1.13
CLIP3-203ENST00000586457 H3BRN7 92 aa7.97□□□□□ -1.13
CLIP3-203ENST00000586457 MPDU1O75352 247 aa7.97□□□□□ -1.13
CLIP3-203ENST00000586457 HLA-DRB4P13762 266 aa7.97□□□□□ -1.13
CLIP3-203ENST00000586457 FGF7P21781 194 aa7.97□□□□□ -1.13
CLIP3-203ENST00000586457 BPIFA4PQ86YQ2 179 aa7.97□□□□□ -1.13
CLIP3-203ENST00000586457 C11orf45Q8TAV5 145 aa7.97□□□□□ -1.13
CLIP3-203ENST00000586457 SAV1Q9H4B6 383 aaPredicted RBP7.97□□□□□ -1.13
CLIP3-203ENST00000586457 CLEC5AQ9NY25 188 aa7.97□□□□□ -1.13
CLIP3-203ENST00000586457 XCL2Q9UBD3 114 aa7.97□□□□□ -1.13
CLIP3-203ENST00000586457 HLA-DRB4X5D2U9 266 aa7.97□□□□□ -1.13
CLIP3-203ENST00000586457 IGHV3OR16-12A0A075B7B8 117 aa7.96□□□□□ -1.14
CLIP3-203ENST00000586457 IGSF23A1L1A6 192 aa7.96□□□□□ -1.14
CLIP3-203ENST00000586457 NUPR2A6NF83 97 aa7.96□□□□□ -1.14
CLIP3-203ENST00000586457 DUSP14O95147 198 aaKnown RBP7.96□□□□□ -1.14
CLIP3-203ENST00000586457 MIFP14174 115 aa7.96□□□□□ -1.14
CLIP3-203ENST00000586457 PSG9Q00887 426 aa7.96□□□□□ -1.14
CLIP3-203ENST00000586457 ZNF738Q8NE65 137 aa7.96□□□□□ -1.14
CLIP3-203ENST00000586457 OR5C1Q8NGR4 320 aa7.96□□□□□ -1.14
CLIP3-203ENST00000586457 MGST2Q99735 147 aa7.96□□□□□ -1.14
CLIP3-203ENST00000586457 TMEM208Q9BTX3 173 aa7.96□□□□□ -1.14
CLIP3-203ENST00000586457 C17orf112F2Z3M2 114 aa7.95□□□□□ -1.14
CLIP3-203ENST00000586457 DEFB4AO15263 64 aa7.95□□□□□ -1.14
CLIP3-203ENST00000586457 PTTG1O95997 202 aa7.95□□□□□ -1.14
CLIP3-203ENST00000586457 RPL29P47914 159 aaKnown RBP7.95□□□□□ -1.14
CLIP3-203ENST00000586457 FXYD7P58549 80 aa7.95□□□□□ -1.14
CLIP3-203ENST00000586457 B2MP61769 119 aa7.95□□□□□ -1.14
CLIP3-203ENST00000586457 RHOBP62745 196 aa7.95□□□□□ -1.14
CLIP3-203ENST00000586457 NHLH2Q02577 135 aa7.95□□□□□ -1.14
CLIP3-203ENST00000586457 IL15RAQ13261 267 aa7.95□□□□□ -1.14
CLIP3-203ENST00000586457 FAM78BQ5VT40 261 aa7.95□□□□□ -1.14
CLIP3-203ENST00000586457 MIC13Q5XKP0 118 aa7.95□□□□□ -1.14
CLIP3-203ENST00000586457 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa7.95□□□□□ -1.14
CLIP3-203ENST00000586457 THAP6Q8TBB0 222 aa7.95□□□□□ -1.14
CLIP3-203ENST00000586457 SCGB1C1Q8TD33 95 aa7.95□□□□□ -1.14
CLIP3-203ENST00000586457 PPP1R1CQ8WVI7 109 aa7.95□□□□□ -1.14
CLIP3-203ENST00000586457 KCNIP2Q9NS61 270 aa7.95□□□□□ -1.14
CLIP3-203ENST00000586457 SLC39A9Q9NUM3 307 aa7.95□□□□□ -1.14
CLIP3-203ENST00000586457 WDR83OSQ9Y284 106 aa7.95□□□□□ -1.14
CLIP3-203ENST00000586457 GOLT1BQ9Y3E0 138 aa7.95□□□□□ -1.14
CLIP3-203ENST00000586457 IFNA5P01569 189 aa7.94□□□□□ -1.14
CLIP3-203ENST00000586457 C4BPBP20851 252 aa7.94□□□□□ -1.14
CLIP3-203ENST00000586457 EWSR1Q01844 656 aaKnown RBP eCLIP7.94□□□□□ -1.14
CLIP3-203ENST00000586457 CLINT1Q14677 625 aa7.94□□□□□ -1.14
CLIP3-203ENST00000586457 IGFL4Q6B9Z1 124 aa7.94□□□□□ -1.14
CLIP3-203ENST00000586457 LCN15Q6UWW0 184 aa7.94□□□□□ -1.14
CLIP3-203ENST00000586457 PATE2Q6UY27 113 aa7.94□□□□□ -1.14
CLIP3-203ENST00000586457 MED28Q9H204 178 aa7.94□□□□□ -1.14
CLIP3-203ENST00000586457 C11orf68Q9H3H3 251 aaKnown RBP7.94□□□□□ -1.14
CLIP3-203ENST00000586457 OR5AC2Q9NZP5 309 aa7.94□□□□□ -1.14
CLIP3-203ENST00000586457 PXMP4Q9Y6I8 212 aa7.94□□□□□ -1.14
CLIP3-203ENST00000586457 A0A0J9YX75 114 aa7.93□□□□□ -1.14
CLIP3-203ENST00000586457 F6UB75 175 aa7.93□□□□□ -1.14
CLIP3-203ENST00000586457 SOCS3O14543 225 aa7.93□□□□□ -1.14
CLIP3-203ENST00000586457 MPC2O95563 127 aa7.93□□□□□ -1.14
CLIP3-203ENST00000586457 AMBPP02760 352 aa7.93□□□□□ -1.14
CLIP3-203ENST00000586457 CXCL2P19875 107 aa7.93□□□□□ -1.14
CLIP3-203ENST00000586457 H2BFSP57053 126 aa7.93□□□□□ -1.14
CLIP3-203ENST00000586457 DEFB1P60022 68 aa7.93□□□□□ -1.14
CLIP3-203ENST00000586457 PSG3Q16557 428 aa7.93□□□□□ -1.14
CLIP3-203ENST00000586457 GUK1Q16774 197 aa7.93□□□□□ -1.14
CLIP3-203ENST00000586457 VWC2Q2TAL6 325 aa7.93□□□□□ -1.14
CLIP3-203ENST00000586457 GDF5OSQ5U4N7 250 aa7.93□□□□□ -1.14
CLIP3-203ENST00000586457 CEMP1Q6PRD7 247 aaPredicted RBP7.93□□□□□ -1.14
CLIP3-203ENST00000586457 RNF182Q8N6D2 247 aa7.93□□□□□ -1.14
CLIP3-203ENST00000586457 CLUHP3Q96NS8 147 aa7.93□□□□□ -1.14
CLIP3-203ENST00000586457 SLC50A1Q9BRV3 221 aa7.93□□□□□ -1.14
CLIP3-203ENST00000586457 C11orf1Q9H5F2 150 aa7.93□□□□□ -1.14
CLIP3-203ENST00000586457 TIMM9Q9Y5J7 89 aa7.93□□□□□ -1.14
CLIP3-203ENST00000586457 A0A087X0K7 114 aa7.92□□□□□ -1.14
CLIP3-203ENST00000586457 IGHV4-28A0A0C4DH34 117 aa7.92□□□□□ -1.14
CLIP3-203ENST00000586457 SMIM9A6NGZ8 99 aa7.92□□□□□ -1.14
CLIP3-203ENST00000586457 SNRPCP09234 159 aaKnown RBP7.92□□□□□ -1.14
CLIP3-203ENST00000586457 RPL12P30050 165 aaKnown RBP7.92□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 233.9 ms