RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 FSHBP01225 129 aa11.04□□□□□ -0.64
LIG3-205ENST00000585941 CLEC3BP05452 202 aa11.04□□□□□ -0.64
LIG3-205ENST00000585941 HNF1AP20823 631 aa11.04□□□□□ -0.64
LIG3-205ENST00000585941 FAM3BP58499 235 aaPredicted RBP11.04□□□□□ -0.64
LIG3-205ENST00000585941 RELQ04864 619 aaPredicted RBP11.04□□□□□ -0.64
LIG3-205ENST00000585941 BAGE2Q86Y30 109 aa11.04□□□□□ -0.64
LIG3-205ENST00000585941 CMTM2Q8TAZ6 248 aa11.04□□□□□ -0.64
LIG3-205ENST00000585941 SOX21Q9Y651 276 aaPredicted RBP11.04□□□□□ -0.64
LIG3-205ENST00000585941 ABCA12Q86UK0 2595 aa11.04□□□□□ -0.64
LIG3-205ENST00000585941 A0A1W2PPQ1 181 aa11.04□□□□□ -0.64
LIG3-205ENST00000585941 MRPS12O15235 138 aaKnown RBP11.04□□□□□ -0.64
LIG3-205ENST00000585941 IGLV2-8P01709 118 aa11.04□□□□□ -0.64
LIG3-205ENST00000585941 TCRAP04437 139 aa11.04□□□□□ -0.64
LIG3-205ENST00000585941 RPL19P84098 196 aaKnown RBP11.04□□□□□ -0.64
LIG3-205ENST00000585941 DEFB112Q30KQ8 113 aa11.04□□□□□ -0.64
LIG3-205ENST00000585941 USMG5Q96IX5 58 aa11.04□□□□□ -0.64
LIG3-205ENST00000585941 Q96MF0 132 aa11.04□□□□□ -0.64
LIG3-205ENST00000585941 CCDC140Q96MF4 163 aa11.04□□□□□ -0.64
LIG3-205ENST00000585941 IL36BQ9NZH7 164 aa11.04□□□□□ -0.64
LIG3-205ENST00000585941 CSPG4Q6UVK1 2322 aa11.03□□□□□ -0.64
LIG3-205ENST00000585941 TRGV3P03979 118 aa11.03□□□□□ -0.64
LIG3-205ENST00000585941 CYB5R2Q6BCY4 276 aa11.03□□□□□ -0.64
LIG3-205ENST00000585941 CLEC19AQ6UXS0 136 aa11.03□□□□□ -0.64
LIG3-205ENST00000585941 ARL6IP6Q8N6S5 226 aa11.03□□□□□ -0.64
LIG3-205ENST00000585941 GPR82Q96P67 336 aa11.03□□□□□ -0.64
LIG3-205ENST00000585941 MS4A10Q96PG2 267 aa11.03□□□□□ -0.64
LIG3-205ENST00000585941 PSMG3-AS1Q96PY0 264 aa11.03□□□□□ -0.64
LIG3-205ENST00000585941 SAV1Q9H4B6 383 aaPredicted RBP11.03□□□□□ -0.64
LIG3-205ENST00000585941 TRBV6-1A0A0K0K1D8 114 aa11.02□□□□□ -0.64
LIG3-205ENST00000585941 K7EQM0 130 aa11.02□□□□□ -0.64
LIG3-205ENST00000585941 TRGC2P03986 189 aa11.02□□□□□ -0.64
LIG3-205ENST00000585941 MGST1P10620 155 aaKnown RBP11.02□□□□□ -0.64
LIG3-205ENST00000585941 PPIFP30405 207 aaKnown RBP11.02□□□□□ -0.64
LIG3-205ENST00000585941 IER3P46695 156 aa11.02□□□□□ -0.64
LIG3-205ENST00000585941 GNG5P63218 68 aa11.02□□□□□ -0.64
LIG3-205ENST00000585941 PSG9Q00887 426 aa11.02□□□□□ -0.64
LIG3-205ENST00000585941 RPEL1Q2QD12 228 aa11.02□□□□□ -0.64
LIG3-205ENST00000585941 IBA57Q5T440 356 aaKnown RBP11.02□□□□□ -0.64
LIG3-205ENST00000585941 TOMM20LQ6UXN7 152 aa11.02□□□□□ -0.64
LIG3-205ENST00000585941 FAM231DQ6ZW35 169 aa11.02□□□□□ -0.64
LIG3-205ENST00000585941 TEX29Q8N6K0 151 aa11.02□□□□□ -0.64
LIG3-205ENST00000585941 ZNF414Q96IQ9 312 aa11.02□□□□□ -0.64
LIG3-205ENST00000585941 AAMDCQ9H7C9 122 aa11.02□□□□□ -0.64
LIG3-205ENST00000585941 CREBBPQ92793 2442 aa11.02□□□□□ -0.65
LIG3-205ENST00000585941 DOPEY2Q9Y3R5 2298 aa11.01□□□□□ -0.65
LIG3-205ENST00000585941 C5orf52A6NGY3 159 aa11.01□□□□□ -0.65
LIG3-205ENST00000585941 ZNF253O75346 499 aa11.01□□□□□ -0.65
LIG3-205ENST00000585941 SNRPCP09234 159 aaKnown RBP11.01□□□□□ -0.65
LIG3-205ENST00000585941 OR5I1Q13606 314 aa11.01□□□□□ -0.65
LIG3-205ENST00000585941 OR8I2Q8N0Y5 310 aa11.01□□□□□ -0.65
LIG3-205ENST00000585941 MAPK1IP1LQ8NDC0 245 aa11.01□□□□□ -0.65
LIG3-205ENST00000585941 LINC00479Q96M42 142 aa11.01□□□□□ -0.65
LIG3-205ENST00000585941 ZFAND3Q9H8U3 227 aa11.01□□□□□ -0.65
LIG3-205ENST00000585941 GNB4Q9HAV0 340 aa11.01□□□□□ -0.65
LIG3-205ENST00000585941 V9GYV3 84 aa11.01□□□□□ -0.65
LIG3-205ENST00000585941 TRAV34A0A0B4J273 112 aa11.01□□□□□ -0.65
LIG3-205ENST00000585941 SERTM2A0A1B0GWG4 89 aa11.01□□□□□ -0.65
LIG3-205ENST00000585941 TPPP2P59282 170 aa11.01□□□□□ -0.65
LIG3-205ENST00000585941 SNRPEP62304 92 aaKnown RBP11.01□□□□□ -0.65
LIG3-205ENST00000585941 C1orf194Q5T5A4 169 aa11.01□□□□□ -0.65
LIG3-205ENST00000585941 SIGLEC15Q6ZMC9 328 aa11.01□□□□□ -0.65
LIG3-205ENST00000585941 A0A0G2JLM5 398 aa11□□□□□ -0.65
LIG3-205ENST00000585941 ZNF320A2RRD8 509 aa11□□□□□ -0.65
LIG3-205ENST00000585941 H3BTX0 84 aa11□□□□□ -0.65
LIG3-205ENST00000585941 UBE2CO00762 179 aa11□□□□□ -0.65
LIG3-205ENST00000585941 LTAP01374 205 aa11□□□□□ -0.65
LIG3-205ENST00000585941 IGHV4-59P01825 116 aa11□□□□□ -0.65
LIG3-205ENST00000585941 BLCAPP62952 87 aa11□□□□□ -0.65
LIG3-205ENST00000585941 FAM209BQ5JX69 171 aa11□□□□□ -0.65
LIG3-205ENST00000585941 KRTAP1-3Q8IUG1 177 aa11□□□□□ -0.65
LIG3-205ENST00000585941 BCL6BQ8N143 479 aaPredicted RBP11□□□□□ -0.65
LIG3-205ENST00000585941 RPH3ALQ9UNE2 315 aa11□□□□□ -0.65
LIG3-205ENST00000585941 APCP25054 2843 aa11□□□□□ -0.65
LIG3-205ENST00000585941 IGLV1-40P01703 118 aa10.99□□□□□ -0.65
LIG3-205ENST00000585941 EXOC3-AS1Q8N2X6 119 aa10.99□□□□□ -0.65
LIG3-205ENST00000585941 TMEM75Q8N9X5 138 aa10.99□□□□□ -0.65
LIG3-205ENST00000585941 METTL26Q96S19 204 aa10.99□□□□□ -0.65
LIG3-205ENST00000585941 RNASE7Q9H1E1 156 aaKnown RBP10.99□□□□□ -0.65
LIG3-205ENST00000585941 LINC00527Q9UJ94 153 aa10.99□□□□□ -0.65
LIG3-205ENST00000585941 TMEM89A2RUT3 159 aa10.98□□□□□ -0.65
LIG3-205ENST00000585941 FBLL1A6NHQ2 334 aaKnown RBP10.98□□□□□ -0.65
LIG3-205ENST00000585941 SLC17A3O00476 420 aa10.98□□□□□ -0.65
LIG3-205ENST00000585941 HIST1H2BKO60814 126 aa10.98□□□□□ -0.65
LIG3-205ENST00000585941 HIST1H2BJP06899 126 aa10.98□□□□□ -0.65
LIG3-205ENST00000585941 HIST1H2BOP23527 126 aa10.98□□□□□ -0.65
LIG3-205ENST00000585941 HIST1H2BBP33778 126 aa10.98□□□□□ -0.65
LIG3-205ENST00000585941 CSN1S1P47710 185 aa10.98□□□□□ -0.65
LIG3-205ENST00000585941 MEOX2P50222 304 aa10.98□□□□□ -0.65
LIG3-205ENST00000585941 HIST1H2BDP58876 126 aa10.98□□□□□ -0.65
LIG3-205ENST00000585941 HIST1H2BCP62807 126 aa10.98□□□□□ -0.65
LIG3-205ENST00000585941 HIST2H2BEQ16778 126 aa10.98□□□□□ -0.65
LIG3-205ENST00000585941 HIST2H2BFQ5QNW6 126 aaPredicted RBP10.98□□□□□ -0.65
LIG3-205ENST00000585941 Q6YL49 198 aa10.98□□□□□ -0.65
LIG3-205ENST00000585941 HIST1H2BHQ93079 126 aa10.98□□□□□ -0.65
LIG3-205ENST00000585941 HIST1H2BNQ99877 126 aa10.98□□□□□ -0.65
LIG3-205ENST00000585941 HIST1H2BMQ99879 126 aa10.98□□□□□ -0.65
LIG3-205ENST00000585941 MLST8Q9BVC4 326 aa10.98□□□□□ -0.65
LIG3-205ENST00000585941 PRDM13Q9H4Q3 707 aa10.98□□□□□ -0.65
LIG3-205ENST00000585941 VPREB3Q9UKI3 123 aa10.98□□□□□ -0.65
LIG3-205ENST00000585941 TENM4Q6N022 2769 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms