RNA–Protein interactions for RNA: ENST00000580751.5

SS18-216, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 547 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-216ENST00000580751 RAB24Q969Q5 203 aa11.77□□□□□ -0.53
SS18-216ENST00000580751 ZFAND3Q9H8U3 227 aa11.77□□□□□ -0.53
SS18-216ENST00000580751 TECRQ9NZ01 308 aaKnown RBP11.77□□□□□ -0.53
SS18-216ENST00000580751 MEGF8Q7Z7M0 2845 aa11.77□□□□□ -0.53
SS18-216ENST00000580751 IGHV3OR16-8A0A075B7F1 116 aa11.76□□□□□ -0.53
SS18-216ENST00000580751 STAG3L2P0CL84 134 aa11.76□□□□□ -0.53
SS18-216ENST00000580751 STAG3L3P0CL85 134 aa11.76□□□□□ -0.53
SS18-216ENST00000580751 C8orf88P0DMB2 117 aa11.76□□□□□ -0.53
SS18-216ENST00000580751 FHITP49789 147 aa11.76□□□□□ -0.53
SS18-216ENST00000580751 PPT1P50897 306 aa11.76□□□□□ -0.53
SS18-216ENST00000580751 LYZP61626 148 aa11.76□□□□□ -0.53
SS18-216ENST00000580751 GCSAMLQ5JQS6 135 aa11.76□□□□□ -0.53
SS18-216ENST00000580751 FAM122CQ6P4D5 195 aa11.76□□□□□ -0.53
SS18-216ENST00000580751 PATE2Q6UY27 113 aa11.76□□□□□ -0.53
SS18-216ENST00000580751 PQLC2Q6ZP29 291 aa11.76□□□□□ -0.53
SS18-216ENST00000580751 OR1B1Q8NGR6 318 aa11.76□□□□□ -0.53
SS18-216ENST00000580751 SEPSECSQ9HD40 501 aaKnown RBP11.76□□□□□ -0.53
SS18-216ENST00000580751 RABAC1Q9UI14 185 aa11.76□□□□□ -0.53
SS18-216ENST00000580751 MAP1LC3B2A6NCE7 125 aa11.75□□□□□ -0.53
SS18-216ENST00000580751 CXorf1O96002 111 aa11.75□□□□□ -0.53
SS18-216ENST00000580751 BMI1P35226 326 aa11.75□□□□□ -0.53
SS18-216ENST00000580751 TAGLN2P37802 199 aaKnown RBP11.75□□□□□ -0.53
SS18-216ENST00000580751 ZNF726P1Q15940 193 aa11.75□□□□□ -0.53
SS18-216ENST00000580751 KHDC3LQ587J8 217 aa11.75□□□□□ -0.53
SS18-216ENST00000580751 C1orf194Q5T5A4 169 aa11.75□□□□□ -0.53
SS18-216ENST00000580751 ADAMTSL5Q6ZMM2 481 aa11.75□□□□□ -0.53
SS18-216ENST00000580751 LINC00305Q7Z4B0 112 aa11.75□□□□□ -0.53
SS18-216ENST00000580751 OR2K2Q8NGT1 345 aa11.75□□□□□ -0.53
SS18-216ENST00000580751 SFT2D1Q8WV19 159 aa11.75□□□□□ -0.53
SS18-216ENST00000580751 METTL26Q96S19 204 aa11.75□□□□□ -0.53
SS18-216ENST00000580751 SHANK2-AS3Q9BTD1 123 aa11.75□□□□□ -0.53
SS18-216ENST00000580751 MAP1LC3BQ9GZQ8 125 aa11.75□□□□□ -0.53
SS18-216ENST00000580751 IGHV7-4-1A0A0J9YVY3 117 aa11.74□□□□□ -0.53
SS18-216ENST00000580751 LINC00862A6NCI5 91 aa11.74□□□□□ -0.53
SS18-216ENST00000580751 ZNF207O43670 478 aaKnown RBP11.74□□□□□ -0.53
SS18-216ENST00000580751 EDN2P20800 178 aa11.74□□□□□ -0.53
SS18-216ENST00000580751 PSMB3P49720 205 aa11.74□□□□□ -0.53
SS18-216ENST00000580751 USF2Q15853 346 aaPredicted RBP11.74□□□□□ -0.53
SS18-216ENST00000580751 LCN12Q6JVE5 192 aa11.74□□□□□ -0.53
SS18-216ENST00000580751 NARS2Q96I59 477 aaKnown RBP11.74□□□□□ -0.53
SS18-216ENST00000580751 PBDC1Q9BVG4 233 aa11.74□□□□□ -0.53
SS18-216ENST00000580751 SLC25A39Q9BZJ4 359 aaPredicted RBP11.74□□□□□ -0.53
SS18-216ENST00000580751 H3BRN7 92 aa11.73□□□□□ -0.53
SS18-216ENST00000580751 NPPCP23582 126 aa11.73□□□□□ -0.53
SS18-216ENST00000580751 CRYBB3P26998 211 aa11.73□□□□□ -0.53
SS18-216ENST00000580751 SORL1Q92673 2214 aa11.73□□□□□ -0.53
SS18-216ENST00000580751 GPR82Q96P67 336 aa11.73□□□□□ -0.53
SS18-216ENST00000580751 SLC25A22Q9H936 323 aa11.73□□□□□ -0.53
SS18-216ENST00000580751 TMEM167BQ9NRX6 74 aa11.73□□□□□ -0.53
SS18-216ENST00000580751 TMEM14CQ9P0S9 112 aa11.73□□□□□ -0.53
SS18-216ENST00000580751 DOK5Q9P104 306 aa11.73□□□□□ -0.53
SS18-216ENST00000580751 SMPXQ9UHP9 88 aa11.73□□□□□ -0.53
SS18-216ENST00000580751 U3KQE9 123 aa11.73□□□□□ -0.53
SS18-216ENST00000580751 ARL2-SNX15V9GYD0 113 aa11.73□□□□□ -0.53
SS18-216ENST00000580751 A0A1W2PS18 150 aa11.72□□□□□ -0.53
SS18-216ENST00000580751 NDUFS6O75380 124 aaKnown RBP11.72□□□□□ -0.53
SS18-216ENST00000580751 DEFB114Q30KQ6 69 aa11.72□□□□□ -0.53
SS18-216ENST00000580751 CD300EQ496F6 205 aaPredicted RBP11.72□□□□□ -0.53
SS18-216ENST00000580751 LCN15Q6UWW0 184 aa11.72□□□□□ -0.53
SS18-216ENST00000580751 MIR17HGQ75NE6 70 aa11.72□□□□□ -0.53
SS18-216ENST00000580751 SUN5Q8TC36 379 aa11.72□□□□□ -0.53
SS18-216ENST00000580751 RHPN1-AS1Q9BWJ2 59 aa11.72□□□□□ -0.53
SS18-216ENST00000580751 HRH4Q9H3N8 390 aa11.72□□□□□ -0.53
SS18-216ENST00000580751 SMDT1Q9H4I9 107 aa11.72□□□□□ -0.53
SS18-216ENST00000580751 TMEM231Q9H6L2 316 aa11.72□□□□□ -0.53
SS18-216ENST00000580751 MLXQ9UH92 298 aa11.72□□□□□ -0.53
SS18-216ENST00000580751 ZNF256Q9Y2P7 627 aaPredicted RBP11.72□□□□□ -0.53
SS18-216ENST00000580751 TRAV25A0A0B4J276 109 aa11.71□□□□□ -0.53
SS18-216ENST00000580751 RAB19A4D1S5 217 aa11.71□□□□□ -0.53
SS18-216ENST00000580751 ZNF98A6NK75 572 aa11.71□□□□□ -0.53
SS18-216ENST00000580751 CHEK1O14757 476 aa11.71□□□□□ -0.53
SS18-216ENST00000580751 IFNA1P01562 189 aa11.71□□□□□ -0.53
SS18-216ENST00000580751 MEOX2P50222 304 aa11.71□□□□□ -0.53
SS18-216ENST00000580751 KRTAP10-11P60412 298 aa11.71□□□□□ -0.53
SS18-216ENST00000580751 BPIFA4PQ86YQ2 179 aa11.71□□□□□ -0.53
SS18-216ENST00000580751 EIF4E3Q8N5X7 224 aaKnown RBP11.71□□□□□ -0.53
SS18-216ENST00000580751 FAM167A-AS1Q96KT0 104 aa11.71□□□□□ -0.53
SS18-216ENST00000580751 IGHV3-49A0A0A0MS15 119 aa11.7□□□□□ -0.54
SS18-216ENST00000580751 BUB3O43684 328 aa11.7□□□□□ -0.54
SS18-216ENST00000580751 CD5P06127 495 aa11.7□□□□□ -0.54
SS18-216ENST00000580751 RPL7P18124 248 aaKnown RBP11.7□□□□□ -0.54
SS18-216ENST00000580751 RBPMS2Q6ZRY4 209 aaKnown RBP11.7□□□□□ -0.54
SS18-216ENST00000580751 TMEM61Q8N0U2 210 aa11.7□□□□□ -0.54
SS18-216ENST00000580751 GRAMD2BQ96HH9 432 aa11.7□□□□□ -0.54
SS18-216ENST00000580751 UHRF2Q96PU4 802 aa11.7□□□□□ -0.54
SS18-216ENST00000580751 TXNDC17Q9BRA2 123 aa11.7□□□□□ -0.54
SS18-216ENST00000580751 SLC25A2Q9BXI2 301 aa11.7□□□□□ -0.54
SS18-216ENST00000580751 OR51M1Q9H341 326 aa11.7□□□□□ -0.54
SS18-216ENST00000580751 MANBALQ9NQG1 85 aa11.7□□□□□ -0.54
SS18-216ENST00000580751 IGHV3OR16-13A0A075B7E8 117 aa11.69□□□□□ -0.54
SS18-216ENST00000580751 IGHV3-74A0A0B4J1X5 117 aa11.69□□□□□ -0.54
SS18-216ENST00000580751 ARL14EPLP0DKL9 152 aa11.69□□□□□ -0.54
SS18-216ENST00000580751 GCHFRP30047 84 aa11.69□□□□□ -0.54
SS18-216ENST00000580751 GUK1Q16774 197 aa11.69□□□□□ -0.54
SS18-216ENST00000580751 SPATA31B1PQ5VZV4 182 aa11.69□□□□□ -0.54
SS18-216ENST00000580751 SSX7Q7RTT5 188 aa11.69□□□□□ -0.54
SS18-216ENST00000580751 PAXXQ9BUH6 204 aa11.69□□□□□ -0.54
SS18-216ENST00000580751 NKX6-2Q9C056 277 aaPredicted RBP11.69□□□□□ -0.54
SS18-216ENST00000580751 IZUMO1RA6ND01 250 aa11.68□□□□□ -0.54
SS18-216ENST00000580751 OR7C2O60412 319 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms