RNA–Protein interactions for RNA: ENST00000580419.5

SMARCE1-216, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 1 (best) BASIC

Gene SMARCE1, Length 1,228 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-216ENST00000580419 C17orf77Q96MU5 243 aa10.37□□□□□ -0.75
SMARCE1-216ENST00000580419 SHANK2-AS3Q9BTD1 123 aa10.37□□□□□ -0.75
SMARCE1-216ENST00000580419 MAGT1Q9H0U3 335 aa10.37□□□□□ -0.75
SMARCE1-216ENST00000580419 SLC25A32Q9H2D1 315 aa10.37□□□□□ -0.75
SMARCE1-216ENST00000580419 NPVFQ9HCQ7 196 aa10.37□□□□□ -0.75
SMARCE1-216ENST00000580419 DKK2Q9UBU2 259 aa10.37□□□□□ -0.75
SMARCE1-216ENST00000580419 A0A087X0K7 114 aa10.36□□□□□ -0.75
SMARCE1-216ENST00000580419 H3BRN7 92 aa10.36□□□□□ -0.75
SMARCE1-216ENST00000580419 TSPOP30536 169 aa10.36□□□□□ -0.75
SMARCE1-216ENST00000580419 BAK1Q16611 211 aa10.36□□□□□ -0.75
SMARCE1-216ENST00000580419 CYP2G1PQ6ZSU1 146 aa10.36□□□□□ -0.75
SMARCE1-216ENST00000580419 POM121L12Q8N7R1 296 aa10.36□□□□□ -0.75
SMARCE1-216ENST00000580419 MITD1Q8WV92 249 aa10.36□□□□□ -0.75
SMARCE1-216ENST00000580419 RSG1Q9BU20 258 aa10.36□□□□□ -0.75
SMARCE1-216ENST00000580419 FAT2Q9NYQ8 4349 aa10.35□□□□□ -0.75
SMARCE1-216ENST00000580419 HYPMO75409 117 aa10.35□□□□□ -0.75
SMARCE1-216ENST00000580419 HBE1P02100 147 aa10.35□□□□□ -0.75
SMARCE1-216ENST00000580419 ORM2P19652 201 aa10.35□□□□□ -0.75
SMARCE1-216ENST00000580419 CXCL2P19875 107 aa10.35□□□□□ -0.75
SMARCE1-216ENST00000580419 RAP2BP61225 183 aa10.35□□□□□ -0.75
SMARCE1-216ENST00000580419 POLR2GP62487 172 aaKnown RBP eCLIP10.35□□□□□ -0.75
SMARCE1-216ENST00000580419 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa10.35□□□□□ -0.75
SMARCE1-216ENST00000580419 C1orf158Q8N1D5 194 aa10.35□□□□□ -0.75
SMARCE1-216ENST00000580419 OR4B1Q8NGF8 309 aa10.35□□□□□ -0.75
SMARCE1-216ENST00000580419 SDHCQ99643 169 aaPredicted RBP10.35□□□□□ -0.75
SMARCE1-216ENST00000580419 NIPSNAP3BQ9BS92 247 aa10.35□□□□□ -0.75
SMARCE1-216ENST00000580419 SLC25A39Q9BZJ4 359 aaPredicted RBP10.35□□□□□ -0.75
SMARCE1-216ENST00000580419 PSENENQ9NZ42 101 aa10.35□□□□□ -0.75
SMARCE1-216ENST00000580419 PAIP2BQ9ULR5 123 aaKnown RBP10.35□□□□□ -0.75
SMARCE1-216ENST00000580419 DNAH17Q9UFH2 4485 aa10.35□□□□□ -0.75
SMARCE1-216ENST00000580419 ADAP1O75689 374 aa10.34□□□□□ -0.75
SMARCE1-216ENST00000580419 IL5P05113 134 aa10.34□□□□□ -0.75
SMARCE1-216ENST00000580419 BTCP35070 178 aa10.34□□□□□ -0.75
SMARCE1-216ENST00000580419 RRN3P1Q2M238 152 aa10.34□□□□□ -0.75
SMARCE1-216ENST00000580419 TEPPQ6URK8 271 aa10.34□□□□□ -0.75
SMARCE1-216ENST00000580419 TMEM182Q6ZP80 229 aaPredicted RBP10.34□□□□□ -0.75
SMARCE1-216ENST00000580419 LINC00299Q6ZSB3 139 aa10.34□□□□□ -0.75
SMARCE1-216ENST00000580419 OR10P1Q8NGE3 313 aa10.34□□□□□ -0.75
SMARCE1-216ENST00000580419 SLC35B3Q9H1N7 401 aa10.34□□□□□ -0.75
SMARCE1-216ENST00000580419 NDUFA13Q9P0J0 144 aa10.34□□□□□ -0.75
SMARCE1-216ENST00000580419 HIGD1AQ9Y241 93 aa10.34□□□□□ -0.75
SMARCE1-216ENST00000580419 PKHD1P08F94 4074 aa10.34□□□□□ -0.75
SMARCE1-216ENST00000580419 DNAH2Q9P225 4427 aa10.33□□□□□ -0.76
SMARCE1-216ENST00000580419 H3BP45 60 aa10.33□□□□□ -0.76
SMARCE1-216ENST00000580419 LGALS9BQ3B8N2 356 aa10.33□□□□□ -0.76
SMARCE1-216ENST00000580419 RNF212Q495C1 297 aa10.33□□□□□ -0.76
SMARCE1-216ENST00000580419 TMEM256Q8N2U0 113 aa10.33□□□□□ -0.76
SMARCE1-216ENST00000580419 C20orf173Q96LM9 149 aa10.33□□□□□ -0.76
SMARCE1-216ENST00000580419 SLC25A22Q9H936 323 aa10.33□□□□□ -0.76
SMARCE1-216ENST00000580419 HERC2O95714 4834 aa10.32□□□□□ -0.76
SMARCE1-216ENST00000580419 TRAV8-2A0A0B4J237 113 aa10.32□□□□□ -0.76
SMARCE1-216ENST00000580419 LYRM9A8MSI8 78 aa10.32□□□□□ -0.76
SMARCE1-216ENST00000580419 IGKV3-20P01619 116 aa10.32□□□□□ -0.76
SMARCE1-216ENST00000580419 LINC00869P0C866 280 aa10.32□□□□□ -0.76
SMARCE1-216ENST00000580419 IL7P13232 177 aa10.32□□□□□ -0.76
SMARCE1-216ENST00000580419 GATA2P23769 480 aaPredicted RBP10.32□□□□□ -0.76
SMARCE1-216ENST00000580419 CNN1P51911 297 aaKnown RBP10.32□□□□□ -0.76
SMARCE1-216ENST00000580419 FAM3BP58499 235 aaPredicted RBP10.32□□□□□ -0.76
SMARCE1-216ENST00000580419 DEFB1P60022 68 aa10.32□□□□□ -0.76
SMARCE1-216ENST00000580419 IAH1Q2TAA2 248 aaPredicted RBP10.32□□□□□ -0.76
SMARCE1-216ENST00000580419 FAM222AQ5U5X8 452 aa10.32□□□□□ -0.76
SMARCE1-216ENST00000580419 ZNF546Q86UE3 836 aa10.32□□□□□ -0.76
SMARCE1-216ENST00000580419 MGAT4CQ9UBM8 478 aa10.32□□□□□ -0.76
SMARCE1-216ENST00000580419 LOC102723971A0A1B0GUV8 181 aa10.31□□□□□ -0.76
SMARCE1-216ENST00000580419 F6UB75 175 aa10.31□□□□□ -0.76
SMARCE1-216ENST00000580419 MRPS12O15235 138 aaKnown RBP10.31□□□□□ -0.76
SMARCE1-216ENST00000580419 CRXO43186 299 aaPredicted RBP10.31□□□□□ -0.76
SMARCE1-216ENST00000580419 SSSCA1O60232 199 aa10.31□□□□□ -0.76
SMARCE1-216ENST00000580419 INSP01308 110 aa10.31□□□□□ -0.76
SMARCE1-216ENST00000580419 ZBTB8BQ8NAP8 495 aaPredicted RBP10.31□□□□□ -0.76
SMARCE1-216ENST00000580419 OR11H7Q8NGC8 314 aa10.31□□□□□ -0.76
SMARCE1-216ENST00000580419 SCRT1Q9BWW7 348 aa10.31□□□□□ -0.76
SMARCE1-216ENST00000580419 FLVCR2Q9UPI3 526 aa10.31□□□□□ -0.76
SMARCE1-216ENST00000580419 RCL1Q9Y2P8 373 aaKnown RBP10.31□□□□□ -0.76
SMARCE1-216ENST00000580419 CXCL3P19876 107 aa10.3□□□□□ -0.76
SMARCE1-216ENST00000580419 LCN15Q6UWW0 184 aa10.3□□□□□ -0.76
SMARCE1-216ENST00000580419 C15orf53Q8NAA6 179 aa10.3□□□□□ -0.76
SMARCE1-216ENST00000580419 CHAC2Q8WUX2 184 aa10.3□□□□□ -0.76
SMARCE1-216ENST00000580419 C20orf144Q9BQM9 153 aa10.3□□□□□ -0.76
SMARCE1-216ENST00000580419 YTHDF2Q9Y5A9 579 aaKnown RBP10.3□□□□□ -0.76
SMARCE1-216ENST00000580419 IGHV3OR16-12A0A075B7B8 117 aa10.29□□□□□ -0.76
SMARCE1-216ENST00000580419 SMCO3A2RU48 225 aa10.29□□□□□ -0.76
SMARCE1-216ENST00000580419 C7orf66A4D0T2 115 aa10.29□□□□□ -0.76
SMARCE1-216ENST00000580419 BOLA2-SMG1P6H3BVE0 249 aa10.29□□□□□ -0.76
SMARCE1-216ENST00000580419 METTL15P1P0C7V9 234 aa10.29□□□□□ -0.76
SMARCE1-216ENST00000580419 ANXA7P20073 488 aaKnown RBP10.29□□□□□ -0.76
SMARCE1-216ENST00000580419 FXYD7P58549 80 aa10.29□□□□□ -0.76
SMARCE1-216ENST00000580419 PSG3Q16557 428 aa10.29□□□□□ -0.76
SMARCE1-216ENST00000580419 OR8A1Q8NGG7 326 aa10.29□□□□□ -0.76
SMARCE1-216ENST00000580419 SLC50A1Q9BRV3 221 aa10.29□□□□□ -0.76
SMARCE1-216ENST00000580419 ARV1Q9H2C2 271 aa10.29□□□□□ -0.76
SMARCE1-216ENST00000580419 NACAE9PAV3 2078 aa10.29□□□□□ -0.76
SMARCE1-216ENST00000580419 GOSR2O14653 212 aa10.28□□□□□ -0.76
SMARCE1-216ENST00000580419 PLA2G10O15496 165 aa10.28□□□□□ -0.76
SMARCE1-216ENST00000580419 MBPP02686 304 aaPredicted RBP10.28□□□□□ -0.76
SMARCE1-216ENST00000580419 OR5G3P0C626 314 aa10.28□□□□□ -0.76
SMARCE1-216ENST00000580419 RAB31Q13636 194 aa10.28□□□□□ -0.76
SMARCE1-216ENST00000580419 PATE2Q6UY27 113 aa10.28□□□□□ -0.76
SMARCE1-216ENST00000580419 ZNF493Q6ZR52 646 aa10.28□□□□□ -0.76
SMARCE1-216ENST00000580419 BPIFA4PQ86YQ2 179 aa10.28□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 119.2 ms