RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 GP9P14770 177 aa19.11■□□□□ 0.65
SHMT1-207ENST00000580002 KHDC3LQ587J8 217 aa19.11■□□□□ 0.65
SHMT1-207ENST00000580002 C17orf77Q96MU5 243 aa19.11■□□□□ 0.65
SHMT1-207ENST00000580002 PAXXQ9BUH6 204 aa19.11■□□□□ 0.65
SHMT1-207ENST00000580002 TMEM231Q9H6L2 316 aa19.11■□□□□ 0.65
SHMT1-207ENST00000580002 SMAD5-AS1Q9Y6J3 95 aa19.11■□□□□ 0.65
SHMT1-207ENST00000580002 H3BQ15 152 aa19.11■□□□□ 0.65
SHMT1-207ENST00000580002 TAS2R45P59539 299 aa19.11■□□□□ 0.65
SHMT1-207ENST00000580002 UBE2G2P60604 165 aa19.11■□□□□ 0.65
SHMT1-207ENST00000580002 MARC2Q969Z3 335 aa19.11■□□□□ 0.65
SHMT1-207ENST00000580002 FXYD5Q96DB9 178 aa19.11■□□□□ 0.65
SHMT1-207ENST00000580002 TMEM213A2RRL7 107 aa19.1■□□□□ 0.65
SHMT1-207ENST00000580002 NDUFA5Q16718 116 aa19.1■□□□□ 0.65
SHMT1-207ENST00000580002 ZP3P21754 424 aa19.09■□□□□ 0.65
SHMT1-207ENST00000580002 FHL3Q13643 280 aa19.09■□□□□ 0.65
SHMT1-207ENST00000580002 PFDN2Q9UHV9 154 aa19.09■□□□□ 0.65
SHMT1-207ENST00000580002 ADAMTSL5Q6ZMM2 481 aa19.09■□□□□ 0.65
SHMT1-207ENST00000580002 PQLC2Q6ZP29 291 aa19.09■□□□□ 0.65
SHMT1-207ENST00000580002 DAZ1Q9NQZ3 744 aaKnown RBP19.09■□□□□ 0.65
SHMT1-207ENST00000580002 C9JQL5 133 aa19.08■□□□□ 0.64
SHMT1-207ENST00000580002 UBE2L3P68036 154 aaKnown RBP19.08■□□□□ 0.64
SHMT1-207ENST00000580002 TOR2AQ5JU69 321 aa19.08■□□□□ 0.64
SHMT1-207ENST00000580002 REC114Q7Z4M0 266 aa19.08■□□□□ 0.64
SHMT1-207ENST00000580002 C1QL4Q86Z23 238 aa19.08■□□□□ 0.64
SHMT1-207ENST00000580002 OR8I2Q8N0Y5 310 aa19.08■□□□□ 0.64
SHMT1-207ENST00000580002 BLNKQ8WV28 456 aa19.08■□□□□ 0.64
SHMT1-207ENST00000580002 CITED1Q99966 193 aa19.08■□□□□ 0.64
SHMT1-207ENST00000580002 ZNF586Q9NXT0 402 aa19.08■□□□□ 0.64
SHMT1-207ENST00000580002 YTHDF2Q9Y5A9 579 aaKnown RBP19.08■□□□□ 0.64
SHMT1-207ENST00000580002 IGHV7-4-1A0A0J9YVY3 117 aa19.07■□□□□ 0.64
SHMT1-207ENST00000580002 PAGE4O60829 102 aa19.07■□□□□ 0.64
SHMT1-207ENST00000580002 NDUFA11Q86Y39 141 aa19.07■□□□□ 0.64
SHMT1-207ENST00000580002 FAM210AQ96ND0 272 aa19.07■□□□□ 0.64
SHMT1-207ENST00000580002 RHPN1-AS1Q9BWJ2 59 aa19.07■□□□□ 0.64
SHMT1-207ENST00000580002 MED9Q9NWA0 146 aa19.07■□□□□ 0.64
SHMT1-207ENST00000580002 K7EMT4 169 aa19.06■□□□□ 0.64
SHMT1-207ENST00000580002 LGALS9O00182 355 aa19.06■□□□□ 0.64
SHMT1-207ENST00000580002 PRB4P10163 310 aaPredicted RBP19.06■□□□□ 0.64
SHMT1-207ENST00000580002 SMPXQ9UHP9 88 aa19.06■□□□□ 0.64
SHMT1-207ENST00000580002 UFC1Q9Y3C8 167 aa19.06■□□□□ 0.64
SHMT1-207ENST00000580002 CHEK1O14757 476 aa19.06■□□□□ 0.64
SHMT1-207ENST00000580002 GUK1Q16774 197 aa19.06■□□□□ 0.64
SHMT1-207ENST00000580002 C16orf54Q6UWD8 224 aa19.06■□□□□ 0.64
SHMT1-207ENST00000580002 RBFOX3A6NFN3 312 aa19.05■□□□□ 0.64
SHMT1-207ENST00000580002 C2orf70A6NJV1 201 aa19.05■□□□□ 0.64
SHMT1-207ENST00000580002 BPIFA4PQ86YQ2 179 aa19.05■□□□□ 0.64
SHMT1-207ENST00000580002 SUN5Q8TC36 379 aa19.05■□□□□ 0.64
SHMT1-207ENST00000580002 TMEM14CQ9P0S9 112 aa19.05■□□□□ 0.64
SHMT1-207ENST00000580002 A8MWP6 167 aa19.04■□□□□ 0.64
SHMT1-207ENST00000580002 IGLC2P0DOY2 106 aa19.04■□□□□ 0.64
SHMT1-207ENST00000580002 ICAM4Q14773 271 aa19.04■□□□□ 0.64
SHMT1-207ENST00000580002 RXFP4Q8TDU9 374 aa19.04■□□□□ 0.64
SHMT1-207ENST00000580002 GLMPQ8WWB7 406 aa19.04■□□□□ 0.64
SHMT1-207ENST00000580002 CITED4Q96RK1 184 aa19.04■□□□□ 0.64
SHMT1-207ENST00000580002 EIF5A2Q9GZV4 153 aaKnown RBP19.04■□□□□ 0.64
SHMT1-207ENST00000580002 NBEAP1P0C6P0 100 aa19.04■□□□□ 0.64
SHMT1-207ENST00000580002 ATP5G3P48201 142 aa19.04■□□□□ 0.64
SHMT1-207ENST00000580002 PSMB3P49720 205 aa19.04■□□□□ 0.64
SHMT1-207ENST00000580002 SPATA3Q8NHX4 192 aa19.04■□□□□ 0.64
SHMT1-207ENST00000580002 VWFP04275 2813 aa19.03■□□□□ 0.64
SHMT1-207ENST00000580002 LOC102723971A0A1B0GUV8 181 aa19.03■□□□□ 0.64
SHMT1-207ENST00000580002 SLC17A3O00476 420 aa19.03■□□□□ 0.64
SHMT1-207ENST00000580002 CBLN1P23435 193 aa19.03■□□□□ 0.64
SHMT1-207ENST00000580002 OR9G4Q8NGQ1 327 aa19.03■□□□□ 0.64
SHMT1-207ENST00000580002 COL6A5A8TX70 2615 aa19.02■□□□□ 0.64
SHMT1-207ENST00000580002 NDUFB4O95168 129 aa19.02■□□□□ 0.64
SHMT1-207ENST00000580002 HIST1H1EP10412 219 aaKnown RBP19.02■□□□□ 0.64
SHMT1-207ENST00000580002 BCL2P10415 239 aa19.02■□□□□ 0.64
SHMT1-207ENST00000580002 FOLR2P14207 255 aa19.02■□□□□ 0.64
SHMT1-207ENST00000580002 ELOVL1Q9BW60 279 aa19.02■□□□□ 0.64
SHMT1-207ENST00000580002 TMEM167BQ9NRX6 74 aa19.02■□□□□ 0.64
SHMT1-207ENST00000580002 TRRAPQ9Y4A5 3859 aa19.02■□□□□ 0.63
SHMT1-207ENST00000580002 STAB1Q9NY15 2570 aa19.01■□□□□ 0.63
SHMT1-207ENST00000580002 IGKV3-7A0A075B6H7 116 aa19.01■□□□□ 0.63
SHMT1-207ENST00000580002 FAM74A7A6NL05 159 aa19.01■□□□□ 0.63
SHMT1-207ENST00000580002 ATP6V1G1O75348 118 aa19.01■□□□□ 0.63
SHMT1-207ENST00000580002 RANP62826 216 aaKnown RBP19.01■□□□□ 0.63
SHMT1-207ENST00000580002 CST9LP1Q5W188 147 aa19.01■□□□□ 0.63
SHMT1-207ENST00000580002 IGFL4Q6B9Z1 124 aa19.01■□□□□ 0.63
SHMT1-207ENST00000580002 RPL7P18124 248 aaKnown RBP19.01■□□□□ 0.63
SHMT1-207ENST00000580002 S100A7AQ86SG5 101 aa19.01■□□□□ 0.63
SHMT1-207ENST00000580002 STXBP6Q8NFX7 210 aa19.01■□□□□ 0.63
SHMT1-207ENST00000580002 MLXQ9UH92 298 aa19.01■□□□□ 0.63
SHMT1-207ENST00000580002 RAB19A4D1S5 217 aa19■□□□□ 0.63
SHMT1-207ENST00000580002 CD5P06127 495 aa19■□□□□ 0.63
SHMT1-207ENST00000580002 CSN3P07498 182 aa19■□□□□ 0.63
SHMT1-207ENST00000580002 PMS2P11Q13670 270 aa19■□□□□ 0.63
SHMT1-207ENST00000580002 ZNF506Q5JVG8 444 aa19■□□□□ 0.63
SHMT1-207ENST00000580002 C1orf194Q5T5A4 169 aa19■□□□□ 0.63
SHMT1-207ENST00000580002 LURAP1LQ8IV03 231 aa19■□□□□ 0.63
SHMT1-207ENST00000580002 OR4F17Q8NGA8 305 aa19■□□□□ 0.63
SHMT1-207ENST00000580002 OR4F4Q96R69 305 aa19■□□□□ 0.63
SHMT1-207ENST00000580002 GGTLC3B5MD39 225 aa18.99■□□□□ 0.63
SHMT1-207ENST00000580002 MYCNOSP40205 109 aa18.99■□□□□ 0.63
SHMT1-207ENST00000580002 CD81P60033 236 aa18.99■□□□□ 0.63
SHMT1-207ENST00000580002 SIGLEC15Q6ZMC9 328 aa18.99■□□□□ 0.63
SHMT1-207ENST00000580002 TRBV19A0A075B6N1 114 aa18.98■□□□□ 0.63
SHMT1-207ENST00000580002 ZNF785A8K8V0 405 aa18.98■□□□□ 0.63
SHMT1-207ENST00000580002 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa18.98■□□□□ 0.63
SHMT1-207ENST00000580002 EXOC3-AS1Q8N2X6 119 aa18.98■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms