RNA–Protein interactions for RNA: ENST00000574867.5

NUP88-210, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 2,081 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-210ENST00000574867 TPT1P13693 172 aaKnown RBP12.85□□□□□ -0.35
NUP88-210ENST00000574867 RPL7P18124 248 aaKnown RBP12.85□□□□□ -0.35
NUP88-210ENST00000574867 M6PRP20645 277 aa12.85□□□□□ -0.35
NUP88-210ENST00000574867 RPL11P62913 178 aaKnown RBP12.85□□□□□ -0.35
NUP88-210ENST00000574867 PAFAH1B2P68402 229 aa12.85□□□□□ -0.35
NUP88-210ENST00000574867 SLC25A32Q9H2D1 315 aa12.85□□□□□ -0.35
NUP88-210ENST00000574867 TRAV2A0A0B4J234 112 aa12.84□□□□□ -0.35
NUP88-210ENST00000574867 GALR1P47211 349 aa12.84□□□□□ -0.35
NUP88-210ENST00000574867 GUCA2BQ16661 112 aa12.84□□□□□ -0.35
NUP88-210ENST00000574867 FAM78BQ5VT40 261 aa12.84□□□□□ -0.35
NUP88-210ENST00000574867 LEMD1Q68G75 181 aa12.84□□□□□ -0.35
NUP88-210ENST00000574867 RFNGQ9Y644 331 aa12.84□□□□□ -0.35
NUP88-210ENST00000574867 OR4C46A6NHA9 309 aa12.84□□□□□ -0.35
NUP88-210ENST00000574867 SPP1P10451 314 aa12.84□□□□□ -0.35
NUP88-210ENST00000574867 GP9P14770 177 aa12.84□□□□□ -0.35
NUP88-210ENST00000574867 BAP18Q8IXM2 172 aa12.84□□□□□ -0.35
NUP88-210ENST00000574867 ZNF785A8K8V0 405 aa12.83□□□□□ -0.36
NUP88-210ENST00000574867 KRTAP10-11P60412 298 aa12.83□□□□□ -0.36
NUP88-210ENST00000574867 RHOBP62745 196 aa12.83□□□□□ -0.36
NUP88-210ENST00000574867 SLC51BQ86UW2 128 aa12.83□□□□□ -0.36
NUP88-210ENST00000574867 BPIFA4PQ86YQ2 179 aa12.83□□□□□ -0.36
NUP88-210ENST00000574867 MS4A6AQ9H2W1 248 aa12.83□□□□□ -0.36
NUP88-210ENST00000574867 SEPSECSQ9HD40 501 aaKnown RBP12.83□□□□□ -0.36
NUP88-210ENST00000574867 NRN1Q9NPD7 142 aa12.83□□□□□ -0.36
NUP88-210ENST00000574867 FUT9Q9Y231 359 aa12.83□□□□□ -0.36
NUP88-210ENST00000574867 NKX2-5P52952 324 aaPredicted RBP12.82□□□□□ -0.36
NUP88-210ENST00000574867 MORN5Q5VZ52 161 aa12.82□□□□□ -0.36
NUP88-210ENST00000574867 STXBP6Q8NFX7 210 aa12.82□□□□□ -0.36
NUP88-210ENST00000574867 IGKV3-7A0A075B6H7 116 aa12.82□□□□□ -0.36
NUP88-210ENST00000574867 SEC11BP0C7V7 166 aa12.82□□□□□ -0.36
NUP88-210ENST00000574867 RAB2AP61019 212 aa12.82□□□□□ -0.36
NUP88-210ENST00000574867 SAMD13Q5VXD3 122 aa12.82□□□□□ -0.36
NUP88-210ENST00000574867 OR10G4Q8NGN3 311 aa12.82□□□□□ -0.36
NUP88-210ENST00000574867 OR10G9Q8NGN4 311 aa12.82□□□□□ -0.36
NUP88-210ENST00000574867 OR10G7Q8NGN6 311 aa12.82□□□□□ -0.36
NUP88-210ENST00000574867 SORL1Q92673 2214 aa12.81□□□□□ -0.36
NUP88-210ENST00000574867 DNASE2O00115 360 aaPredicted RBP12.81□□□□□ -0.36
NUP88-210ENST00000574867 MEOX2P50222 304 aa12.81□□□□□ -0.36
NUP88-210ENST00000574867 TMEM41BQ5BJD5 291 aa12.81□□□□□ -0.36
NUP88-210ENST00000574867 GTSCR1Q86UQ5 136 aa12.81□□□□□ -0.36
NUP88-210ENST00000574867 NBEAL1Q6ZS30 2694 aa12.81□□□□□ -0.36
NUP88-210ENST00000574867 ATF4P18848 351 aaPredicted RBP12.81□□□□□ -0.36
NUP88-210ENST00000574867 TAS2R45P59539 299 aa12.81□□□□□ -0.36
NUP88-210ENST00000574867 AKR1C8PQ5T2L2 129 aa12.81□□□□□ -0.36
NUP88-210ENST00000574867 EIF5AL1Q6IS14 154 aaKnown RBP12.81□□□□□ -0.36
NUP88-210ENST00000574867 GBGT1Q8N5D6 347 aa12.81□□□□□ -0.36
NUP88-210ENST00000574867 DCANP1Q8TF63 244 aa12.81□□□□□ -0.36
NUP88-210ENST00000574867 NOTCH1P46531 2555 aa12.8□□□□□ -0.36
NUP88-210ENST00000574867 A0A1W2PPV4 95 aa12.8□□□□□ -0.36
NUP88-210ENST00000574867 MIR17HGQ75NE6 70 aa12.8□□□□□ -0.36
NUP88-210ENST00000574867 TMEM14CQ9P0S9 112 aa12.8□□□□□ -0.36
NUP88-210ENST00000574867 A0A087X0K7 114 aa12.79□□□□□ -0.36
NUP88-210ENST00000574867 TRAV5A0A0B4J249 113 aa12.79□□□□□ -0.36
NUP88-210ENST00000574867 MRPS12O15235 138 aaKnown RBP12.79□□□□□ -0.36
NUP88-210ENST00000574867 TFPI2P48307 235 aa12.79□□□□□ -0.36
NUP88-210ENST00000574867 CDC34P49427 236 aaPredicted RBP12.79□□□□□ -0.36
NUP88-210ENST00000574867 KHDC3LQ587J8 217 aa12.79□□□□□ -0.36
NUP88-210ENST00000574867 SPATA31B1PQ5VZV4 182 aa12.79□□□□□ -0.36
NUP88-210ENST00000574867 FAM122CQ6P4D5 195 aa12.79□□□□□ -0.36
NUP88-210ENST00000574867 PRR25Q96S07 402 aa12.79□□□□□ -0.36
NUP88-210ENST00000574867 UMAD1C9J7I0 102 aa12.79□□□□□ -0.36
NUP88-210ENST00000574867 K7EQG2 157 aa12.79□□□□□ -0.36
NUP88-210ENST00000574867 SLC25A2Q9BXI2 301 aa12.79□□□□□ -0.36
NUP88-210ENST00000574867 SMAD5-AS1Q9Y6J3 95 aa12.79□□□□□ -0.36
NUP88-210ENST00000574867 BOLA2-SMG1P6H3BVE0 249 aa12.78□□□□□ -0.36
NUP88-210ENST00000574867 CD81P60033 236 aa12.78□□□□□ -0.36
NUP88-210ENST00000574867 RPP25LQ8N5L8 163 aaKnown RBP12.78□□□□□ -0.36
NUP88-210ENST00000574867 FAM167A-AS1Q96KT0 104 aa12.78□□□□□ -0.36
NUP88-210ENST00000574867 FAM110AQ9BQ89 295 aa12.78□□□□□ -0.36
NUP88-210ENST00000574867 RPRMQ9NS64 109 aa12.78□□□□□ -0.36
NUP88-210ENST00000574867 IGLC2P0DOY2 106 aa12.77□□□□□ -0.36
NUP88-210ENST00000574867 CMC4P56277 68 aaPredicted RBP12.77□□□□□ -0.36
NUP88-210ENST00000574867 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa12.77□□□□□ -0.36
NUP88-210ENST00000574867 WFDC3Q8IUB2 231 aa12.77□□□□□ -0.36
NUP88-210ENST00000574867 TMED6Q8WW62 240 aa12.77□□□□□ -0.36
NUP88-210ENST00000574867 ACTR3CQ9C0K3 210 aaPredicted RBP12.77□□□□□ -0.36
NUP88-210ENST00000574867 GUK1Q16774 197 aa12.77□□□□□ -0.37
NUP88-210ENST00000574867 HRH4Q9H3N8 390 aa12.77□□□□□ -0.37
NUP88-210ENST00000574867 AURKAIP1Q9NWT8 199 aaPredicted RBP12.77□□□□□ -0.37
NUP88-210ENST00000574867 OR7C2O60412 319 aa12.76□□□□□ -0.37
NUP88-210ENST00000574867 SNRPD3P62318 126 aaKnown RBP12.76□□□□□ -0.37
NUP88-210ENST00000574867 LCN15Q6UWW0 184 aa12.76□□□□□ -0.37
NUP88-210ENST00000574867 PQLC2Q6ZP29 291 aa12.76□□□□□ -0.37
NUP88-210ENST00000574867 OR51M1Q9H341 326 aa12.76□□□□□ -0.37
NUP88-210ENST00000574867 ISLRO14498 428 aa12.76□□□□□ -0.37
NUP88-210ENST00000574867 SOCS3O14543 225 aa12.76□□□□□ -0.37
NUP88-210ENST00000574867 CD7P09564 240 aa12.76□□□□□ -0.37
NUP88-210ENST00000574867 ID1P41134 155 aa12.76□□□□□ -0.37
NUP88-210ENST00000574867 PSMB3P49720 205 aa12.76□□□□□ -0.37
NUP88-210ENST00000574867 DPPA3Q6W0C5 159 aa12.76□□□□□ -0.37
NUP88-210ENST00000574867 RAB24Q969Q5 203 aa12.76□□□□□ -0.37
NUP88-210ENST00000574867 PHYHIPLQ96FC7 376 aa12.76□□□□□ -0.37
NUP88-210ENST00000574867 C17orf77Q96MU5 243 aa12.76□□□□□ -0.37
NUP88-210ENST00000574867 PAXXQ9BUH6 204 aa12.76□□□□□ -0.37
NUP88-210ENST00000574867 CTXND1A0A1B0GTU2 59 aa12.75□□□□□ -0.37
NUP88-210ENST00000574867 ATP6V1G1O75348 118 aa12.75□□□□□ -0.37
NUP88-210ENST00000574867 HIST1H1EP10412 219 aaKnown RBP12.75□□□□□ -0.37
NUP88-210ENST00000574867 ODF3L2Q3SX64 289 aa12.75□□□□□ -0.37
NUP88-210ENST00000574867 SLC50A1Q9BRV3 221 aa12.75□□□□□ -0.37
NUP88-210ENST00000574867 OR11H12B2RN74 326 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms