RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 GPR82Q96P67 336 aa5.95□□□□□ -1.46
VPS53-214ENST00000572607 SEC22CQ9BRL7 303 aa5.95□□□□□ -1.46
VPS53-214ENST00000572607 SLC25A22Q9H936 323 aa5.95□□□□□ -1.46
VPS53-214ENST00000572607 NPVFQ9HCQ7 196 aa5.95□□□□□ -1.46
VPS53-214ENST00000572607 BATF3Q9NR55 127 aa5.95□□□□□ -1.46
VPS53-214ENST00000572607 RNF24Q9Y225 148 aa5.95□□□□□ -1.46
VPS53-214ENST00000572607 RCL1Q9Y2P8 373 aaKnown RBP5.95□□□□□ -1.46
VPS53-214ENST00000572607 LSM5Q9Y4Y9 91 aaKnown RBP5.95□□□□□ -1.46
VPS53-214ENST00000572607 DNAH10Q8IVF4 4471 aa5.94□□□□□ -1.46
VPS53-214ENST00000572607 IGKV1OR2-108A0A075B7D4 117 aa5.94□□□□□ -1.46
VPS53-214ENST00000572607 FNDC10F2Z333 226 aa5.94□□□□□ -1.46
VPS53-214ENST00000572607 UPK1BO75841 260 aa5.94□□□□□ -1.46
VPS53-214ENST00000572607 MBPP02686 304 aaPredicted RBP5.94□□□□□ -1.46
VPS53-214ENST00000572607 ATF4P18848 351 aaPredicted RBP5.94□□□□□ -1.46
VPS53-214ENST00000572607 PSMB3P49720 205 aa5.94□□□□□ -1.46
VPS53-214ENST00000572607 CAV2P51636 162 aa5.94□□□□□ -1.46
VPS53-214ENST00000572607 S100A10P60903 97 aa5.94□□□□□ -1.46
VPS53-214ENST00000572607 RAB31Q13636 194 aa5.94□□□□□ -1.46
VPS53-214ENST00000572607 PMS2P11Q13670 270 aa5.94□□□□□ -1.46
VPS53-214ENST00000572607 TRPT1Q86TN4 253 aaKnown RBP5.94□□□□□ -1.46
VPS53-214ENST00000572607 OR11H2Q8NH07 326 aa5.94□□□□□ -1.46
VPS53-214ENST00000572607 C2orf50Q96LR7 162 aa5.94□□□□□ -1.46
VPS53-214ENST00000572607 LINC00052Q96N35 136 aa5.94□□□□□ -1.46
VPS53-214ENST00000572607 GGACTQ9BVM4 153 aa5.94□□□□□ -1.46
VPS53-214ENST00000572607 C1QTNF4Q9BXJ3 329 aa5.94□□□□□ -1.46
VPS53-214ENST00000572607 TBC1D24Q9ULP9 559 aa5.94□□□□□ -1.46
VPS53-214ENST00000572607 PCLOQ9Y6V0 5065 aa5.94□□□□□ -1.46
VPS53-214ENST00000572607 HECTD4Q9Y4D8 3996 aa5.93□□□□□ -1.46
VPS53-214ENST00000572607 C7orf66A4D0T2 115 aa5.93□□□□□ -1.46
VPS53-214ENST00000572607 NUPR2A6NF83 97 aa5.93□□□□□ -1.46
VPS53-214ENST00000572607 ZNF98A6NK75 572 aa5.93□□□□□ -1.46
VPS53-214ENST00000572607 PMS2P5A8MQ11 134 aa5.93□□□□□ -1.46
VPS53-214ENST00000572607 NPIPB6E9PJ23 425 aa5.93□□□□□ -1.46
VPS53-214ENST00000572607 H3BS24 57 aa5.93□□□□□ -1.46
VPS53-214ENST00000572607 GOSR2O14653 212 aa5.93□□□□□ -1.46
VPS53-214ENST00000572607 PRAF2O60831 178 aa5.93□□□□□ -1.46
VPS53-214ENST00000572607 HYPMO75409 117 aa5.93□□□□□ -1.46
VPS53-214ENST00000572607 OR5G3P0C626 314 aa5.93□□□□□ -1.46
VPS53-214ENST00000572607 LINC00869P0C866 280 aa5.93□□□□□ -1.46
VPS53-214ENST00000572607 MED14OSP0DP75 135 aa5.93□□□□□ -1.46
VPS53-214ENST00000572607 GATA2P23769 480 aaPredicted RBP5.93□□□□□ -1.46
VPS53-214ENST00000572607 PAX9P55771 341 aa5.93□□□□□ -1.46
VPS53-214ENST00000572607 EBLN2Q6P2I7 272 aa5.93□□□□□ -1.46
VPS53-214ENST00000572607 TEPPQ6URK8 271 aa5.93□□□□□ -1.46
VPS53-214ENST00000572607 ZNF546Q86UE3 836 aa5.93□□□□□ -1.46
VPS53-214ENST00000572607 STX12Q86Y82 276 aa5.93□□□□□ -1.46
VPS53-214ENST00000572607 C16orf92Q96LL3 132 aa5.93□□□□□ -1.46
VPS53-214ENST00000572607 MFFQ9GZY8 342 aa5.93□□□□□ -1.46
VPS53-214ENST00000572607 DOK5Q9P104 306 aa5.93□□□□□ -1.46
VPS53-214ENST00000572607 HIGD1AQ9Y241 93 aa5.93□□□□□ -1.46
VPS53-214ENST00000572607 KMT2AQ03164 3969 aa5.92□□□□□ -1.46
VPS53-214ENST00000572607 K7EPK0 472 aa5.92□□□□□ -1.46
VPS53-214ENST00000572607 ISLRO14498 428 aa5.92□□□□□ -1.46
VPS53-214ENST00000572607 DEDDO75618 318 aa5.92□□□□□ -1.46
VPS53-214ENST00000572607 CCNKO75909 580 aa5.92□□□□□ -1.46
VPS53-214ENST00000572607 HLA-DRB4P13762 266 aa5.92□□□□□ -1.46
VPS53-214ENST00000572607 RPL7P18124 248 aaKnown RBP5.92□□□□□ -1.46
VPS53-214ENST00000572607 HBG1P69891 147 aa5.92□□□□□ -1.46
VPS53-214ENST00000572607 HBG2P69892 147 aa5.92□□□□□ -1.46
VPS53-214ENST00000572607 SLC38A11Q08AI6 406 aa5.92□□□□□ -1.46
VPS53-214ENST00000572607 PXDC1Q5TGL8 231 aa5.92□□□□□ -1.46
VPS53-214ENST00000572607 SPATA31B1PQ5VZV4 182 aa5.92□□□□□ -1.46
VPS53-214ENST00000572607 FOXI2Q6ZQN5 318 aa5.92□□□□□ -1.46
VPS53-214ENST00000572607 RSG1Q9BU20 258 aa5.92□□□□□ -1.46
VPS53-214ENST00000572607 SLC25A39Q9BZJ4 359 aaPredicted RBP5.92□□□□□ -1.46
VPS53-214ENST00000572607 ARL6Q9H0F7 186 aa5.92□□□□□ -1.46
VPS53-214ENST00000572607 SLC25A32Q9H2D1 315 aa5.92□□□□□ -1.46
VPS53-214ENST00000572607 C11orf68Q9H3H3 251 aaKnown RBP5.92□□□□□ -1.46
VPS53-214ENST00000572607 RPRMQ9NS64 109 aa5.92□□□□□ -1.46
VPS53-214ENST00000572607 KLK5Q9Y337 293 aaPredicted RBP5.92□□□□□ -1.46
VPS53-214ENST00000572607 HLA-DRB4X5D2U9 266 aa5.92□□□□□ -1.46
VPS53-214ENST00000572607 INMT-MINDY4F8WBC2 141 aa5.91□□□□□ -1.46
VPS53-214ENST00000572607 H3BMM0 161 aa5.91□□□□□ -1.46
VPS53-214ENST00000572607 H3BRN7 92 aa5.91□□□□□ -1.46
VPS53-214ENST00000572607 IGKV3-20P01619 116 aa5.91□□□□□ -1.46
VPS53-214ENST00000572607 RLN2P04090 185 aa5.91□□□□□ -1.46
VPS53-214ENST00000572607 MIFP14174 115 aa5.91□□□□□ -1.46
VPS53-214ENST00000572607 C4BPBP20851 252 aa5.91□□□□□ -1.46
VPS53-214ENST00000572607 SULT1A1P50225 295 aa5.91□□□□□ -1.46
VPS53-214ENST00000572607 PLP1P60201 277 aa5.91□□□□□ -1.46
VPS53-214ENST00000572607 FGL1Q08830 312 aa5.91□□□□□ -1.46
VPS53-214ENST00000572607 TMEM182Q6ZP80 229 aaPredicted RBP5.91□□□□□ -1.46
VPS53-214ENST00000572607 Q6ZRG5 221 aa5.91□□□□□ -1.46
VPS53-214ENST00000572607 OR4B1Q8NGF8 309 aa5.91□□□□□ -1.46
VPS53-214ENST00000572607 C11orf45Q8TAV5 145 aa5.91□□□□□ -1.46
VPS53-214ENST00000572607 LRRC20Q8TCA0 184 aa5.91□□□□□ -1.46
VPS53-214ENST00000572607 SHANK2-AS3Q9BTD1 123 aa5.91□□□□□ -1.46
VPS53-214ENST00000572607 SCRT1Q9BWW7 348 aa5.91□□□□□ -1.46
VPS53-214ENST00000572607 ARV1Q9H2C2 271 aa5.91□□□□□ -1.46
VPS53-214ENST00000572607 SAV1Q9H4B6 383 aaPredicted RBP5.91□□□□□ -1.46
VPS53-214ENST00000572607 LYRM2Q9NU23 88 aaPredicted RBP5.91□□□□□ -1.46
VPS53-214ENST00000572607 RYR1P21817 5038 aa5.91□□□□□ -1.46
VPS53-214ENST00000572607 FAM24AA6NFZ4 105 aa5.9□□□□□ -1.46
VPS53-214ENST00000572607 SOCS3O14543 225 aa5.9□□□□□ -1.46
VPS53-214ENST00000572607 AGPAT2O15120 278 aa5.9□□□□□ -1.46
VPS53-214ENST00000572607 SSNA1O43805 119 aa5.9□□□□□ -1.46
VPS53-214ENST00000572607 COX7A2P2O60397 106 aa5.9□□□□□ -1.46
VPS53-214ENST00000572607 CST7O76096 145 aa5.9□□□□□ -1.46
VPS53-214ENST00000572607 S100A11P31949 105 aa5.9□□□□□ -1.46
VPS53-214ENST00000572607 CAMLGP49069 296 aa5.9□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms