RNA–Protein interactions for RNA: ENST00000572253.5

CCDC40-207, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 3,962 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-207ENST00000572253 LINC00173Q6ZV60 143 aa8.59□□□□□ -1.03
CCDC40-207ENST00000572253 BPIFA4PQ86YQ2 179 aa8.59□□□□□ -1.03
CCDC40-207ENST00000572253 RITA1Q96K30 269 aa8.59□□□□□ -1.03
CCDC40-207ENST00000572253 AP5S1Q9NUS5 200 aa8.59□□□□□ -1.03
CCDC40-207ENST00000572253 TRAV8-1A0A0A6YYK1 113 aa8.59□□□□□ -1.03
CCDC40-207ENST00000572253 NPIPB6E9PJ23 425 aa8.59□□□□□ -1.03
CCDC40-207ENST00000572253 PPP1R27Q86WC6 154 aa8.59□□□□□ -1.03
CCDC40-207ENST00000572253 PRSS3P2Q8NHM4 247 aa8.59□□□□□ -1.03
CCDC40-207ENST00000572253 NGBQ9NPG2 151 aa8.59□□□□□ -1.03
CCDC40-207ENST00000572253 SH3BGRL2Q9UJC5 107 aa8.59□□□□□ -1.03
CCDC40-207ENST00000572253 CT45A10P0DMU9 189 aa8.58□□□□□ -1.04
CCDC40-207ENST00000572253 PMCHL2Q9BQD1 86 aa8.58□□□□□ -1.04
CCDC40-207ENST00000572253 TMUB1Q9BVT8 246 aa8.58□□□□□ -1.04
CCDC40-207ENST00000572253 KAAG1Q9UBP8 84 aa8.58□□□□□ -1.04
CCDC40-207ENST00000572253 K7EP13 123 aa8.58□□□□□ -1.04
CCDC40-207ENST00000572253 DLX6P56179 175 aa8.58□□□□□ -1.04
CCDC40-207ENST00000572253 Q6AWC8 147 aa8.58□□□□□ -1.04
CCDC40-207ENST00000572253 CTSZQ9UBR2 303 aa8.58□□□□□ -1.04
CCDC40-207ENST00000572253 PLXNB1O43157 2135 aa8.58□□□□□ -1.04
CCDC40-207ENST00000572253 TRBV6-1A0A0K0K1D8 114 aa8.58□□□□□ -1.04
CCDC40-207ENST00000572253 EXOC3-AS1Q8N2X6 119 aa8.58□□□□□ -1.04
CCDC40-207ENST00000572253 OR10AG1Q8NH19 301 aa8.58□□□□□ -1.04
CCDC40-207ENST00000572253 RPEQ96AT9 228 aa8.58□□□□□ -1.04
CCDC40-207ENST00000572253 CNIH1O95406 144 aa8.57□□□□□ -1.04
CCDC40-207ENST00000572253 APOHP02749 345 aaPredicted RBP8.57□□□□□ -1.04
CCDC40-207ENST00000572253 IGLC1P0CG04 106 aa8.57□□□□□ -1.04
CCDC40-207ENST00000572253 HIST1H1AQ02539 215 aaPredicted RBP8.57□□□□□ -1.04
CCDC40-207ENST00000572253 RBPJQ06330 500 aa8.57□□□□□ -1.04
CCDC40-207ENST00000572253 TPPP3Q9BW30 176 aa8.57□□□□□ -1.04
CCDC40-207ENST00000572253 ZNF138P52744 262 aa8.57□□□□□ -1.04
CCDC40-207ENST00000572253 BVES-AS1Q5T3Y7 98 aa8.57□□□□□ -1.04
CCDC40-207ENST00000572253 RNASE8Q8TDE3 154 aaKnown RBP8.57□□□□□ -1.04
CCDC40-207ENST00000572253 RNASE6Q93091 150 aaKnown RBP8.57□□□□□ -1.04
CCDC40-207ENST00000572253 CNTFRP26992 372 aa8.57□□□□□ -1.04
CCDC40-207ENST00000572253 ABCA1O95477 2261 aa8.57□□□□□ -1.04
CCDC40-207ENST00000572253 FCN3O75636 299 aa8.56□□□□□ -1.04
CCDC40-207ENST00000572253 ARF6P62330 175 aa8.56□□□□□ -1.04
CCDC40-207ENST00000572253 MRGPRG-AS1Q2M3A8 158 aa8.56□□□□□ -1.04
CCDC40-207ENST00000572253 RUSC1-AS1Q66K80 236 aa8.56□□□□□ -1.04
CCDC40-207ENST00000572253 IGF2-ASQ6U949 168 aa8.56□□□□□ -1.04
CCDC40-207ENST00000572253 TMEM75Q8N9X5 138 aa8.56□□□□□ -1.04
CCDC40-207ENST00000572253 FBXL15Q9H469 300 aa8.56□□□□□ -1.04
CCDC40-207ENST00000572253 IGHV1-3A0A0C4DH29 117 aa8.56□□□□□ -1.04
CCDC40-207ENST00000572253 TNFRSF13BO14836 293 aaPredicted RBP8.56□□□□□ -1.04
CCDC40-207ENST00000572253 LYPD1Q8N2G4 141 aa8.56□□□□□ -1.04
CCDC40-207ENST00000572253 SCRT2Q9NQ03 307 aa8.56□□□□□ -1.04
CCDC40-207ENST00000572253 RALYQ9UKM9 306 aaKnown RBP8.56□□□□□ -1.04
CCDC40-207ENST00000572253 PSG8Q9UQ74 426 aa8.56□□□□□ -1.04
CCDC40-207ENST00000572253 CRYGBP07316 175 aa8.56□□□□□ -1.04
CCDC40-207ENST00000572253 ARMS2P0C7Q2 107 aa8.55□□□□□ -1.04
CCDC40-207ENST00000572253 DEFB125Q8N687 156 aa8.55□□□□□ -1.04
CCDC40-207ENST00000572253 SHANK2-AS3Q9BTD1 123 aa8.55□□□□□ -1.04
CCDC40-207ENST00000572253 PKDREJQ9NTG1 2253 aa8.55□□□□□ -1.04
CCDC40-207ENST00000572253 TRBV19A0A075B6N1 114 aa8.55□□□□□ -1.04
CCDC40-207ENST00000572253 MUC21A0A0G2JKD1 596 aa8.55□□□□□ -1.04
CCDC40-207ENST00000572253 A0A0G2JNJ9 132 aa8.55□□□□□ -1.04
CCDC40-207ENST00000572253 MUC21A0A140T8X8 626 aa8.55□□□□□ -1.04
CCDC40-207ENST00000572253 COX7A1P24310 79 aa8.55□□□□□ -1.04
CCDC40-207ENST00000572253 GPR183P32249 361 aa8.55□□□□□ -1.04
CCDC40-207ENST00000572253 MUC21Q5SSG8 566 aa8.55□□□□□ -1.04
CCDC40-207ENST00000572253 LINC01545Q5VT33 79 aa8.55□□□□□ -1.04
CCDC40-207ENST00000572253 ZC2HC1AQ96GY0 325 aa8.55□□□□□ -1.04
CCDC40-207ENST00000572253 SRSF8Q9BRL6 282 aaKnown RBP8.55□□□□□ -1.04
CCDC40-207ENST00000572253 AAMDCQ9H7C9 122 aa8.55□□□□□ -1.04
CCDC40-207ENST00000572253 Q9UFV3 132 aa8.55□□□□□ -1.04
CCDC40-207ENST00000572253 SERTM2A0A1B0GWG4 89 aa8.55□□□□□ -1.04
CCDC40-207ENST00000572253 TEX22C9J3V5 150 aa8.55□□□□□ -1.04
CCDC40-207ENST00000572253 CD5LO43866 347 aa8.55□□□□□ -1.04
CCDC40-207ENST00000572253 RPS20P60866 119 aaKnown RBP8.55□□□□□ -1.04
CCDC40-207ENST00000572253 RNF5Q99942 180 aa8.55□□□□□ -1.04
CCDC40-207ENST00000572253 TAX1BP3O14907 124 aa8.54□□□□□ -1.04
CCDC40-207ENST00000572253 IGLV2-11P01706 119 aa8.54□□□□□ -1.04
CCDC40-207ENST00000572253 NBEAQ8NFP9 2946 aa8.54□□□□□ -1.04
CCDC40-207ENST00000572253 BUB1B-PAK6H3BSN5 160 aa8.54□□□□□ -1.04
CCDC40-207ENST00000572253 I3L2K1 104 aa8.54□□□□□ -1.04
CCDC40-207ENST00000572253 PSG3Q16557 428 aa8.54□□□□□ -1.04
CCDC40-207ENST00000572253 C16orf54Q6UWD8 224 aa8.54□□□□□ -1.04
CCDC40-207ENST00000572253 NEU4Q8WWR8 484 aaPredicted RBP8.54□□□□□ -1.04
CCDC40-207ENST00000572253 LOC105371242A0A075B767 164 aa8.54□□□□□ -1.04
CCDC40-207ENST00000572253 HOXB4P17483 251 aaPredicted RBP8.54□□□□□ -1.04
CCDC40-207ENST00000572253 CDKN1BP46527 198 aa8.54□□□□□ -1.04
CCDC40-207ENST00000572253 RBX1P62877 108 aa8.54□□□□□ -1.04
CCDC40-207ENST00000572253 MCRIP2Q9BUT9 160 aaKnown RBP8.54□□□□□ -1.04
CCDC40-207ENST00000572253 H3BRN7 92 aa8.54□□□□□ -1.04
CCDC40-207ENST00000572253 THBDP07204 575 aa8.54□□□□□ -1.04
CCDC40-207ENST00000572253 COX8AP10176 69 aa8.54□□□□□ -1.04
CCDC40-207ENST00000572253 SAPCD1Q5SSQ6 148 aa8.54□□□□□ -1.04
CCDC40-207ENST00000572253 ZNF747Q9BV97 191 aa8.54□□□□□ -1.04
CCDC40-207ENST00000572253 PEF1Q9UBV8 284 aaKnown RBP8.54□□□□□ -1.04
CCDC40-207ENST00000572253 IGKV1-17P01599 117 aa8.53□□□□□ -1.04
CCDC40-207ENST00000572253 IGLV1-47P01700 117 aa8.53□□□□□ -1.04
CCDC40-207ENST00000572253 RHOGP84095 191 aa8.53□□□□□ -1.04
CCDC40-207ENST00000572253 ERASQ7Z444 233 aa8.53□□□□□ -1.04
CCDC40-207ENST00000572253 RNF125Q96EQ8 232 aa8.53□□□□□ -1.04
CCDC40-207ENST00000572253 RAB1BQ9H0U4 201 aa8.53□□□□□ -1.04
CCDC40-207ENST00000572253 TP73-AS1Q9UF72 201 aa8.53□□□□□ -1.04
CCDC40-207ENST00000572253 PCNX1Q96RV3 2341 aa8.53□□□□□ -1.04
CCDC40-207ENST00000572253 A0A087X0K7 114 aa8.53□□□□□ -1.04
CCDC40-207ENST00000572253 TMEM189A5PLL7 270 aa8.53□□□□□ -1.04
CCDC40-207ENST00000572253 IL4P05112 153 aa8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms