RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 RELNP78509 3460 aa17.99■□□□□ 0.47
VPS53-211ENST00000571805 TRBV19A0A075B6N1 114 aa17.98■□□□□ 0.47
VPS53-211ENST00000571805 TRBV6-1A0A0K0K1D8 114 aa17.98■□□□□ 0.47
VPS53-211ENST00000571805 FAM231BA6NCW3 169 aa17.98■□□□□ 0.47
VPS53-211ENST00000571805 FAM181BA6NEQ2 426 aa17.98■□□□□ 0.47
VPS53-211ENST00000571805 H3BRN7 92 aa17.98■□□□□ 0.47
VPS53-211ENST00000571805 C16orf54Q6UWD8 224 aa17.98■□□□□ 0.47
VPS53-211ENST00000571805 ZNF491Q8N8L2 437 aa17.98■□□□□ 0.47
VPS53-211ENST00000571805 FBLN7Q53RD9 439 aa17.98■□□□□ 0.47
VPS53-211ENST00000571805 EBLN2Q6P2I7 272 aa17.98■□□□□ 0.47
VPS53-211ENST00000571805 RNASEKQ6P5S7 137 aaKnown RBP17.98■□□□□ 0.47
VPS53-211ENST00000571805 PRNTQ86SH4 94 aa17.98■□□□□ 0.47
VPS53-211ENST00000571805 M0R2Z0 102 aa17.97■□□□□ 0.47
VPS53-211ENST00000571805 IGLC2P0DOY2 106 aa17.97■□□□□ 0.47
VPS53-211ENST00000571805 CD24P25063 80 aa17.97■□□□□ 0.47
VPS53-211ENST00000571805 RAB1BQ9H0U4 201 aa17.97■□□□□ 0.47
VPS53-211ENST00000571805 TOX4O94842 621 aa17.97■□□□□ 0.47
VPS53-211ENST00000571805 KLRD1Q13241 179 aa17.97■□□□□ 0.47
VPS53-211ENST00000571805 LCN12Q6JVE5 192 aa17.97■□□□□ 0.47
VPS53-211ENST00000571805 BPIFA4PQ86YQ2 179 aa17.97■□□□□ 0.47
VPS53-211ENST00000571805 ODF3BA8MYP8 253 aa17.96■□□□□ 0.47
VPS53-211ENST00000571805 OVOL3O00110 214 aa17.96■□□□□ 0.47
VPS53-211ENST00000571805 COL8A1P27658 744 aa17.96■□□□□ 0.47
VPS53-211ENST00000571805 MRPS12O15235 138 aaKnown RBP17.96■□□□□ 0.47
VPS53-211ENST00000571805 IGLC3P0DOY3 106 aa17.96■□□□□ 0.47
VPS53-211ENST00000571805 KLF17Q5JT82 389 aaPredicted RBP17.96■□□□□ 0.47
VPS53-211ENST00000571805 C2orf70A6NJV1 201 aa17.95■□□□□ 0.46
VPS53-211ENST00000571805 SIGLEC15Q6ZMC9 328 aa17.95■□□□□ 0.46
VPS53-211ENST00000571805 RNF125Q96EQ8 232 aa17.95■□□□□ 0.46
VPS53-211ENST00000571805 WI2-2373I1.2A0A1W2PRP0 233 aa17.95■□□□□ 0.46
VPS53-211ENST00000571805 APOHP02749 345 aaPredicted RBP17.95■□□□□ 0.46
VPS53-211ENST00000571805 RPLP1P05386 114 aaKnown RBP17.95■□□□□ 0.46
VPS53-211ENST00000571805 CEACAM3P40198 252 aa17.95■□□□□ 0.46
VPS53-211ENST00000571805 ADORA2A-AS1P86434 159 aa17.95■□□□□ 0.46
VPS53-211ENST00000571805 TMEM190Q8WZ59 177 aa17.95■□□□□ 0.46
VPS53-211ENST00000571805 RNF24Q9Y225 148 aa17.95■□□□□ 0.46
VPS53-211ENST00000571805 M0R1W7 72 aa17.94■□□□□ 0.46
VPS53-211ENST00000571805 FOXA3P55318 350 aaPredicted RBP17.94■□□□□ 0.46
VPS53-211ENST00000571805 TMEM75Q8N9X5 138 aa17.94■□□□□ 0.46
VPS53-211ENST00000571805 OR4F17Q8NGA8 305 aa17.94■□□□□ 0.46
VPS53-211ENST00000571805 TIMD4Q96H15 378 aa17.94■□□□□ 0.46
VPS53-211ENST00000571805 HRNRQ86YZ3 2850 aaPredicted RBP17.94■□□□□ 0.46
VPS53-211ENST00000571805 IL4P05112 153 aa17.94■□□□□ 0.46
VPS53-211ENST00000571805 PRTN3P24158 256 aa17.94■□□□□ 0.46
VPS53-211ENST00000571805 C5orf64Q2M2E5 130 aa17.94■□□□□ 0.46
VPS53-211ENST00000571805 ZC2HC1AQ96GY0 325 aa17.94■□□□□ 0.46
VPS53-211ENST00000571805 UQCR10Q9UDW1 63 aa17.94■□□□□ 0.46
VPS53-211ENST00000571805 LOC105371242A0A075B767 164 aa17.93■□□□□ 0.46
VPS53-211ENST00000571805 PMCHL1Q16048 86 aa17.93■□□□□ 0.46
VPS53-211ENST00000571805 C11orf71Q6IPW1 123 aa17.93■□□□□ 0.46
VPS53-211ENST00000571805 ATOH7Q8N100 152 aa17.93■□□□□ 0.46
VPS53-211ENST00000571805 LYPD1Q8N2G4 141 aa17.93■□□□□ 0.46
VPS53-211ENST00000571805 FANCD2OSQ96PS1 177 aa17.93■□□□□ 0.46
VPS53-211ENST00000571805 HAX1O00165 279 aa17.93■□□□□ 0.46
VPS53-211ENST00000571805 HLA-DRB1P01911 266 aa17.93■□□□□ 0.46
VPS53-211ENST00000571805 BTF3P20290 206 aaKnown RBP17.93■□□□□ 0.46
VPS53-211ENST00000571805 KIR3DL3Q8N743 410 aa17.93■□□□□ 0.46
VPS53-211ENST00000571805 ZNF414Q96IQ9 312 aa17.93■□□□□ 0.46
VPS53-211ENST00000571805 S4R3C0 116 aa17.93■□□□□ 0.46
VPS53-211ENST00000571805 MAJINQ3KP22 176 aa17.92■□□□□ 0.46
VPS53-211ENST00000571805 FAM120AOSQ5T036 256 aa17.92■□□□□ 0.46
VPS53-211ENST00000571805 BCL6BQ8N143 479 aaPredicted RBP17.92■□□□□ 0.46
VPS53-211ENST00000571805 ZFP30Q9Y2G7 519 aa17.92■□□□□ 0.46
VPS53-211ENST00000571805 SPTA1P02549 2419 aa17.91■□□□□ 0.46
VPS53-211ENST00000571805 A0A1W2PRD5 423 aa17.91■□□□□ 0.46
VPS53-211ENST00000571805 A0A1W2PRF3 423 aa17.91■□□□□ 0.46
VPS53-211ENST00000571805 A0A1W2PRM7 423 aa17.91■□□□□ 0.46
VPS53-211ENST00000571805 FCGR2BP31994 310 aaPredicted RBP17.91■□□□□ 0.46
VPS53-211ENST00000571805 FAM162BQ5T6X4 162 aa17.91■□□□□ 0.46
VPS53-211ENST00000571805 NDFIP1Q9BT67 221 aa17.91■□□□□ 0.46
VPS53-211ENST00000571805 IGLV11-55A0A075B6I3 123 aa17.91■□□□□ 0.46
VPS53-211ENST00000571805 LOC102724200A0A096LPH7 203 aaPredicted RBP17.91■□□□□ 0.46
VPS53-211ENST00000571805 M0QZ24 198 aa17.91■□□□□ 0.46
VPS53-211ENST00000571805 G0S2P27469 103 aa17.91■□□□□ 0.46
VPS53-211ENST00000571805 HES1Q14469 280 aa17.91■□□□□ 0.46
VPS53-211ENST00000571805 SH2D7A6NKC9 451 aaPredicted RBP17.9■□□□□ 0.46
VPS53-211ENST00000571805 NPIPB5A8MRT5 1133 aa17.9■□□□□ 0.46
VPS53-211ENST00000571805 PSG8Q9UQ74 426 aa17.9■□□□□ 0.46
VPS53-211ENST00000571805 SPATA12Q7Z6I5 190 aa17.9■□□□□ 0.46
VPS53-211ENST00000571805 CHCHD1Q96BP2 118 aaKnown RBP17.9■□□□□ 0.46
VPS53-211ENST00000571805 ASCL2Q99929 193 aa17.9■□□□□ 0.46
VPS53-211ENST00000571805 MSRB2Q9Y3D2 182 aa17.9■□□□□ 0.46
VPS53-211ENST00000571805 TRAV30A0A087WSZ9 112 aa17.89■□□□□ 0.45
VPS53-211ENST00000571805 F8W735 103 aaPredicted RBP17.89■□□□□ 0.45
VPS53-211ENST00000571805 ZNF25P17030 456 aaPredicted RBP17.89■□□□□ 0.45
VPS53-211ENST00000571805 PSG3Q16557 428 aa17.89■□□□□ 0.45
VPS53-211ENST00000571805 Q56UQ5 140 aa17.89■□□□□ 0.45
VPS53-211ENST00000571805 ZNF562Q6V9R5 426 aa17.89■□□□□ 0.45
VPS53-211ENST00000571805 DYNAPQ8N1N2 210 aa17.89■□□□□ 0.45
VPS53-211ENST00000571805 KLHDC1Q8N7A1 406 aa17.89■□□□□ 0.45
VPS53-211ENST00000571805 CLEC5AQ9NY25 188 aa17.89■□□□□ 0.45
VPS53-211ENST00000571805 CHEK1O14757 476 aa17.89■□□□□ 0.45
VPS53-211ENST00000571805 GNG7O60262 68 aa17.89■□□□□ 0.45
VPS53-211ENST00000571805 PRB4P10163 310 aaPredicted RBP17.89■□□□□ 0.45
VPS53-211ENST00000571805 BATFQ16520 125 aa17.89■□□□□ 0.45
VPS53-211ENST00000571805 ZNF48Q96MX3 618 aaPredicted RBP17.89■□□□□ 0.45
VPS53-211ENST00000571805 CRIP1P50238 77 aa17.88■□□□□ 0.45
VPS53-211ENST00000571805 NEU4Q8WWR8 484 aaPredicted RBP17.88■□□□□ 0.45
VPS53-211ENST00000571805 IGHV1-24A0A0C4DH33 117 aa17.88■□□□□ 0.45
VPS53-211ENST00000571805 MFAP4P55083 255 aa17.88■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms