RNA–Protein interactions for RNA: ENST00000570546.5

CIITA-204, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 5,342 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-204ENST00000570546 Q8TAT8 98 aa12.44□□□□□ -0.42
CIITA-204ENST00000570546 CYSLTR1Q9Y271 337 aa12.44□□□□□ -0.42
CIITA-204ENST00000570546 COL8A2P25067 703 aa12.43□□□□□ -0.42
CIITA-204ENST00000570546 GATA4P43694 442 aa12.43□□□□□ -0.42
CIITA-204ENST00000570546 OR5A1Q8NGJ0 315 aa12.43□□□□□ -0.42
CIITA-204ENST00000570546 SMPXQ9UHP9 88 aa12.43□□□□□ -0.42
CIITA-204ENST00000570546 M0R1W7 72 aa12.43□□□□□ -0.42
CIITA-204ENST00000570546 ZNF833PQ6ZTB9 187 aa12.43□□□□□ -0.42
CIITA-204ENST00000570546 LURAP1LQ8IV03 231 aa12.43□□□□□ -0.42
CIITA-204ENST00000570546 Q8TCH9 128 aa12.43□□□□□ -0.42
CIITA-204ENST00000570546 LDLRAD2Q5SZI1 272 aa12.43□□□□□ -0.42
CIITA-204ENST00000570546 RNF138Q8WVD3 245 aa12.43□□□□□ -0.42
CIITA-204ENST00000570546 ITLN2Q8WWU7 325 aaPredicted RBP12.43□□□□□ -0.42
CIITA-204ENST00000570546 NCOR1P1Q9H4R4 102 aa12.43□□□□□ -0.42
CIITA-204ENST00000570546 TGFAP01135 160 aa12.43□□□□□ -0.42
CIITA-204ENST00000570546 GUSBP1Q15486 140 aa12.43□□□□□ -0.42
CIITA-204ENST00000570546 DUX4L9Q6RFH8 374 aaPredicted RBP12.43□□□□□ -0.42
CIITA-204ENST00000570546 Q8NFD4 153 aa12.43□□□□□ -0.42
CIITA-204ENST00000570546 MOB4Q9Y3A3 225 aa12.42□□□□□ -0.42
CIITA-204ENST00000570546 TTC32Q5I0X7 151 aa12.42□□□□□ -0.42
CIITA-204ENST00000570546 ZNF114Q8NC26 417 aa12.42□□□□□ -0.42
CIITA-204ENST00000570546 SHANK2-AS3Q9BTD1 123 aa12.42□□□□□ -0.42
CIITA-204ENST00000570546 SNRNP200O75643 2136 aaKnown RBP12.42□□□□□ -0.42
CIITA-204ENST00000570546 LINC01559Q495D7 138 aa12.42□□□□□ -0.42
CIITA-204ENST00000570546 NPFFR1Q9GZQ6 430 aa12.42□□□□□ -0.42
CIITA-204ENST00000570546 TRAV40A0A0B4J280 105 aa12.41□□□□□ -0.42
CIITA-204ENST00000570546 MPV17L2Q567V2 206 aa12.41□□□□□ -0.42
CIITA-204ENST00000570546 GTSCR1Q86UQ5 136 aa12.41□□□□□ -0.42
CIITA-204ENST00000570546 JMJD8Q96S16 334 aa12.41□□□□□ -0.42
CIITA-204ENST00000570546 V9GYV3 84 aa12.41□□□□□ -0.42
CIITA-204ENST00000570546 IGFL4Q6B9Z1 124 aa12.41□□□□□ -0.42
CIITA-204ENST00000570546 OR2K2Q8NGT1 345 aa12.41□□□□□ -0.42
CIITA-204ENST00000570546 LINC01587Q99440 93 aa12.41□□□□□ -0.42
CIITA-204ENST00000570546 A0A087X0K7 114 aa12.41□□□□□ -0.42
CIITA-204ENST00000570546 C3orf36Q3SXR2 165 aa12.41□□□□□ -0.42
CIITA-204ENST00000570546 C18orf32Q8TCD1 76 aa12.41□□□□□ -0.42
CIITA-204ENST00000570546 C20orf144Q9BQM9 153 aa12.41□□□□□ -0.42
CIITA-204ENST00000570546 SRSF8Q9BRL6 282 aaKnown RBP12.41□□□□□ -0.42
CIITA-204ENST00000570546 ZNF492Q9P255 531 aa12.41□□□□□ -0.42
CIITA-204ENST00000570546 E7EQL1 145 aa12.41□□□□□ -0.42
CIITA-204ENST00000570546 H3BRM9 83 aa12.41□□□□□ -0.42
CIITA-204ENST00000570546 ZNF134P52741 427 aa12.41□□□□□ -0.42
CIITA-204ENST00000570546 TMEM219Q86XT9 240 aa12.41□□□□□ -0.42
CIITA-204ENST00000570546 GGTLC3B5MD39 225 aa12.4□□□□□ -0.42
CIITA-204ENST00000570546 YPEL3P61236 119 aaPredicted RBP12.4□□□□□ -0.42
CIITA-204ENST00000570546 SAMD5Q5TGI4 173 aa12.4□□□□□ -0.42
CIITA-204ENST00000570546 MEGF9Q9H1U4 602 aa12.4□□□□□ -0.42
CIITA-204ENST00000570546 ZNF815PA8K554 130 aa12.4□□□□□ -0.42
CIITA-204ENST00000570546 HOXA3O43365 443 aaPredicted RBP12.4□□□□□ -0.42
CIITA-204ENST00000570546 DKK1O94907 266 aa12.4□□□□□ -0.42
CIITA-204ENST00000570546 SRD5A1P18405 259 aa12.4□□□□□ -0.42
CIITA-204ENST00000570546 IFI27P40305 119 aaPredicted RBP12.4□□□□□ -0.42
CIITA-204ENST00000570546 TMEM101Q96IK0 257 aa12.4□□□□□ -0.42
CIITA-204ENST00000570546 VCX2Q9H322 139 aa12.4□□□□□ -0.42
CIITA-204ENST00000570546 CNTFRP26992 372 aa12.4□□□□□ -0.43
CIITA-204ENST00000570546 EFNA4P52798 201 aa12.4□□□□□ -0.43
CIITA-204ENST00000570546 MCRIP2Q9BUT9 160 aaKnown RBP12.4□□□□□ -0.43
CIITA-204ENST00000570546 IGLV1-44P01699 117 aa12.39□□□□□ -0.43
CIITA-204ENST00000570546 KRTAP27-1Q3LI81 207 aa12.39□□□□□ -0.43
CIITA-204ENST00000570546 TMEM155Q4W5P6 130 aa12.39□□□□□ -0.43
CIITA-204ENST00000570546 Q6ZSR3 168 aa12.39□□□□□ -0.43
CIITA-204ENST00000570546 AMN1Q8IY45 258 aa12.39□□□□□ -0.43
CIITA-204ENST00000570546 WFDC12Q8WWY7 111 aa12.39□□□□□ -0.43
CIITA-204ENST00000570546 KIAA2026Q5HYC2 2103 aa12.39□□□□□ -0.43
CIITA-204ENST00000570546 ZNF106Q9H2Y7 1883 aaKnown RBP12.39□□□□□ -0.43
CIITA-204ENST00000570546 SPTA1P02549 2419 aa12.39□□□□□ -0.43
CIITA-204ENST00000570546 DUSP14O95147 198 aaKnown RBP12.39□□□□□ -0.43
CIITA-204ENST00000570546 SFTA2Q6UW10 78 aa12.39□□□□□ -0.43
CIITA-204ENST00000570546 Q6ZWC4 215 aa12.39□□□□□ -0.43
CIITA-204ENST00000570546 MTURNQ8N3F0 131 aa12.39□□□□□ -0.43
CIITA-204ENST00000570546 FGF23Q9GZV9 251 aaPredicted RBP12.39□□□□□ -0.43
CIITA-204ENST00000570546 TRBV7-1A0A0A6YYK4 115 aa12.38□□□□□ -0.43
CIITA-204ENST00000570546 TMEM75Q8N9X5 138 aa12.38□□□□□ -0.43
CIITA-204ENST00000570546 PEMTQ9UBM1 199 aa12.38□□□□□ -0.43
CIITA-204ENST00000570546 SMKR1H3BMG3 65 aa12.38□□□□□ -0.43
CIITA-204ENST00000570546 ARMS2P0C7Q2 107 aa12.38□□□□□ -0.43
CIITA-204ENST00000570546 PLA2G2EQ9NZK7 142 aa12.38□□□□□ -0.43
CIITA-204ENST00000570546 NDPQ00604 133 aa12.38□□□□□ -0.43
CIITA-204ENST00000570546 ZNF479Q96JC4 524 aa12.38□□□□□ -0.43
CIITA-204ENST00000570546 NAA38Q9BRA0 125 aaKnown RBP12.38□□□□□ -0.43
CIITA-204ENST00000570546 SMIM27A0A1W2PRY6 76 aa12.38□□□□□ -0.43
CIITA-204ENST00000570546 SNHG12Q9BXW3 62 aa12.38□□□□□ -0.43
CIITA-204ENST00000570546 MRPS16Q9Y3D3 137 aaKnown RBP12.38□□□□□ -0.43
CIITA-204ENST00000570546 EMP1P54849 157 aa12.37□□□□□ -0.43
CIITA-204ENST00000570546 A0A1B0GV72 72 aa12.37□□□□□ -0.43
CIITA-204ENST00000570546 LY6HO94772 140 aa12.37□□□□□ -0.43
CIITA-204ENST00000570546 SELENOKQ9Y6D0 94 aa12.37□□□□□ -0.43
CIITA-204ENST00000570546 PDE6HQ13956 83 aa12.37□□□□□ -0.43
CIITA-204ENST00000570546 CT83Q5H943 113 aa12.37□□□□□ -0.43
CIITA-204ENST00000570546 BCL6BQ8N143 479 aaPredicted RBP12.37□□□□□ -0.43
CIITA-204ENST00000570546 ESPL1Q14674 2120 aa12.37□□□□□ -0.43
CIITA-204ENST00000570546 SMAD7O15105 426 aaKnown RBP12.36□□□□□ -0.43
CIITA-204ENST00000570546 RIPPLY3P57055 190 aa12.36□□□□□ -0.43
CIITA-204ENST00000570546 CD300EQ496F6 205 aaPredicted RBP12.36□□□□□ -0.43
CIITA-204ENST00000570546 C9orf139Q6ZV77 190 aa12.36□□□□□ -0.43
CIITA-204ENST00000570546 PRSS22Q9GZN4 317 aa12.36□□□□□ -0.43
CIITA-204ENST00000570546 UBE2V1Q13404 147 aa12.36□□□□□ -0.43
CIITA-204ENST00000570546 LY6DQ14210 128 aa12.36□□□□□ -0.43
CIITA-204ENST00000570546 TEX36Q5VZQ5 186 aa12.36□□□□□ -0.43
CIITA-204ENST00000570546 C11orf52Q96A22 123 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms