RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 FAM167A-AS1Q96KT0 104 aa6.21□□□□□ -1.42
VPS39-213ENST00000570062 SLC25A2Q9BXI2 301 aa6.21□□□□□ -1.42
VPS39-213ENST00000570062 TMPRSS5Q9H3S3 457 aa6.21□□□□□ -1.42
VPS39-213ENST00000570062 CDC42EP3Q9UKI2 254 aa6.21□□□□□ -1.42
VPS39-213ENST00000570062 PUS1Q9Y606 427 aaKnown RBP eCLIP6.21□□□□□ -1.42
VPS39-213ENST00000570062 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.21□□□□□ -1.42
VPS39-213ENST00000570062 CSMD2Q7Z408 3487 aa6.2□□□□□ -1.42
VPS39-213ENST00000570062 MED13LQ71F56 2210 aa6.2□□□□□ -1.42
VPS39-213ENST00000570062 C7orf77A4D0Y5 90 aa6.2□□□□□ -1.42
VPS39-213ENST00000570062 OR2T8A6NH00 312 aa6.2□□□□□ -1.42
VPS39-213ENST00000570062 ZNF98A6NK75 572 aa6.2□□□□□ -1.42
VPS39-213ENST00000570062 C9JCJ5 164 aa6.2□□□□□ -1.42
VPS39-213ENST00000570062 H3BRN7 92 aa6.2□□□□□ -1.42
VPS39-213ENST00000570062 NDUFA4O00483 81 aa6.2□□□□□ -1.42
VPS39-213ENST00000570062 SMAD7O15105 426 aaKnown RBP6.2□□□□□ -1.42
VPS39-213ENST00000570062 HOXA3O43365 443 aaPredicted RBP6.2□□□□□ -1.42
VPS39-213ENST00000570062 CRYBA1P05813 215 aa6.2□□□□□ -1.42
VPS39-213ENST00000570062 PF4V1P10720 104 aa6.2□□□□□ -1.42
VPS39-213ENST00000570062 CEBPGP53567 150 aa6.2□□□□□ -1.42
VPS39-213ENST00000570062 RPL19P84098 196 aaKnown RBP6.2□□□□□ -1.42
VPS39-213ENST00000570062 CFHR3Q02985 330 aa6.2□□□□□ -1.42
VPS39-213ENST00000570062 GUCA2BQ16661 112 aa6.2□□□□□ -1.42
VPS39-213ENST00000570062 FAM106AQ4KMX7 169 aa6.2□□□□□ -1.42
VPS39-213ENST00000570062 FBLN7Q53RD9 439 aa6.2□□□□□ -1.42
VPS39-213ENST00000570062 SPATA31B1PQ5VZV4 182 aa6.2□□□□□ -1.42
VPS39-213ENST00000570062 FAM90A2PQ658T7 463 aa6.2□□□□□ -1.42
VPS39-213ENST00000570062 ZNF343Q6P1L6 599 aa6.2□□□□□ -1.42
VPS39-213ENST00000570062 ANAPC16Q96DE5 110 aa6.2□□□□□ -1.42
VPS39-213ENST00000570062 GRAMD2BQ96HH9 432 aa6.2□□□□□ -1.42
VPS39-213ENST00000570062 METTL26Q96S19 204 aa6.2□□□□□ -1.42
VPS39-213ENST00000570062 ELOVL1Q9BW60 279 aa6.2□□□□□ -1.42
VPS39-213ENST00000570062 PARLQ9H300 379 aa6.2□□□□□ -1.42
VPS39-213ENST00000570062 SDF2L1Q9HCN8 221 aa6.2□□□□□ -1.42
VPS39-213ENST00000570062 OTORQ9NRC9 128 aa6.2□□□□□ -1.42
VPS39-213ENST00000570062 YAE1D1Q9NRH1 226 aa6.2□□□□□ -1.42
VPS39-213ENST00000570062 HELTA6NFD8 242 aa6.19□□□□□ -1.42
VPS39-213ENST00000570062 LINC01548A6NM66 108 aa6.19□□□□□ -1.42
VPS39-213ENST00000570062 GGCTO75223 188 aaKnown RBP6.19□□□□□ -1.42
VPS39-213ENST00000570062 NPPCP23582 126 aa6.19□□□□□ -1.42
VPS39-213ENST00000570062 GPR183P32249 361 aa6.19□□□□□ -1.42
VPS39-213ENST00000570062 GALR1P47211 349 aa6.19□□□□□ -1.42
VPS39-213ENST00000570062 CNN1P51911 297 aaKnown RBP6.19□□□□□ -1.42
VPS39-213ENST00000570062 UBE2G2P60604 165 aa6.19□□□□□ -1.42
VPS39-213ENST00000570062 SUMO1P63165 101 aaKnown RBP6.19□□□□□ -1.42
VPS39-213ENST00000570062 AWAT1Q58HT5 328 aa6.19□□□□□ -1.42
VPS39-213ENST00000570062 CLEC19AQ6UXS0 136 aa6.19□□□□□ -1.42
VPS39-213ENST00000570062 C19orf35Q6ZS72 473 aa6.19□□□□□ -1.42
VPS39-213ENST00000570062 C15orf54Q8N8G6 183 aa6.19□□□□□ -1.42
VPS39-213ENST00000570062 C5orf17Q8NAS9 161 aa6.19□□□□□ -1.42
VPS39-213ENST00000570062 CMTM2Q8TAZ6 248 aa6.19□□□□□ -1.42
VPS39-213ENST00000570062 FXYD5Q96DB9 178 aa6.19□□□□□ -1.42
VPS39-213ENST00000570062 MS4A10Q96PG2 267 aa6.19□□□□□ -1.42
VPS39-213ENST00000570062 CHRDL1Q9BU40 450 aa6.19□□□□□ -1.42
VPS39-213ENST00000570062 AAMDCQ9H7C9 122 aa6.19□□□□□ -1.42
VPS39-213ENST00000570062 RPS10P5Q9NQ39 176 aa6.19□□□□□ -1.42
VPS39-213ENST00000570062 MDFIC2A0A1B0GVS7 189 aa6.18□□□□□ -1.42
VPS39-213ENST00000570062 K7EMT4 169 aa6.18□□□□□ -1.42
VPS39-213ENST00000570062 TSPAN4O14817 238 aa6.18□□□□□ -1.42
VPS39-213ENST00000570062 NDUFB4O95168 129 aa6.18□□□□□ -1.42
VPS39-213ENST00000570062 GP9P14770 177 aa6.18□□□□□ -1.42
VPS39-213ENST00000570062 S100PP25815 95 aa6.18□□□□□ -1.42
VPS39-213ENST00000570062 PSMB8P28062 276 aa6.18□□□□□ -1.42
VPS39-213ENST00000570062 ARL3P36405 182 aa6.18□□□□□ -1.42
VPS39-213ENST00000570062 CSN1S1P47710 185 aa6.18□□□□□ -1.42
VPS39-213ENST00000570062 BTN1A1Q13410 526 aa6.18□□□□□ -1.42
VPS39-213ENST00000570062 TOMM20LQ6UXN7 152 aa6.18□□□□□ -1.42
VPS39-213ENST00000570062 GPHB5Q86YW7 130 aa6.18□□□□□ -1.42
VPS39-213ENST00000570062 OR8I2Q8N0Y5 310 aa6.18□□□□□ -1.42
VPS39-213ENST00000570062 CIARTQ8N365 385 aaPredicted RBP6.18□□□□□ -1.42
VPS39-213ENST00000570062 SIGLECL1Q8N7X8 197 aa6.18□□□□□ -1.42
VPS39-213ENST00000570062 RNF152Q8N8N0 203 aa6.18□□□□□ -1.42
VPS39-213ENST00000570062 ZNF503Q96F45 646 aa6.18□□□□□ -1.42
VPS39-213ENST00000570062 UBE2E2Q96LR5 201 aa6.18□□□□□ -1.42
VPS39-213ENST00000570062 IMMP2LQ96T52 175 aa6.18□□□□□ -1.42
VPS39-213ENST00000570062 GNB4Q9HAV0 340 aa6.18□□□□□ -1.42
VPS39-213ENST00000570062 PEF1Q9UBV8 284 aaKnown RBP6.18□□□□□ -1.42
VPS39-213ENST00000570062 EPDR1Q9UM22 224 aa6.18□□□□□ -1.42
VPS39-213ENST00000570062 NIPBLQ6KC79 2804 aaeCLIP6.18□□□□□ -1.42
VPS39-213ENST00000570062 AKAP6Q13023 2319 aa6.17□□□□□ -1.42
VPS39-213ENST00000570062 TNCP24821 2201 aa6.17□□□□□ -1.42
VPS39-213ENST00000570062 TRBV19A0A075B6N1 114 aa6.17□□□□□ -1.42
VPS39-213ENST00000570062 TRAV5A0A0B4J249 113 aa6.17□□□□□ -1.42
VPS39-213ENST00000570062 TRBV6-1A0A0K0K1D8 114 aa6.17□□□□□ -1.42
VPS39-213ENST00000570062 PGPA6NDG6 321 aa6.17□□□□□ -1.42
VPS39-213ENST00000570062 OR10J4P0C629 311 aa6.17□□□□□ -1.42
VPS39-213ENST00000570062 SRD5A1P18405 259 aa6.17□□□□□ -1.42
VPS39-213ENST00000570062 ATF4P18848 351 aaPredicted RBP6.17□□□□□ -1.42
VPS39-213ENST00000570062 CRYBB3P26998 211 aa6.17□□□□□ -1.42
VPS39-213ENST00000570062 AKR1C3P42330 323 aa6.17□□□□□ -1.42
VPS39-213ENST00000570062 ATP5G3P48201 142 aa6.17□□□□□ -1.42
VPS39-213ENST00000570062 GNG4P50150 75 aa6.17□□□□□ -1.42
VPS39-213ENST00000570062 RANP62826 216 aaKnown RBP6.17□□□□□ -1.42
VPS39-213ENST00000570062 USF2Q15853 346 aaPredicted RBP6.17□□□□□ -1.42
VPS39-213ENST00000570062 ZNF674Q2M3X9 581 aa6.17□□□□□ -1.42
VPS39-213ENST00000570062 LCE4AQ5TA78 99 aa6.17□□□□□ -1.42
VPS39-213ENST00000570062 OR4X2Q8NGF9 303 aa6.17□□□□□ -1.42
VPS39-213ENST00000570062 FMC1Q96HJ9 113 aa6.17□□□□□ -1.42
VPS39-213ENST00000570062 CCDC140Q96MF4 163 aa6.17□□□□□ -1.42
VPS39-213ENST00000570062 OR5B12Q96R08 314 aa6.17□□□□□ -1.42
VPS39-213ENST00000570062 SLC50A1Q9BRV3 221 aa6.17□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms