RNA–Protein interactions for RNA: ENST00000569430.6

CLN3-238, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CLN3, Length 3,867 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-238ENST00000569430 IFI27L1Q96BM0 104 aa9.25□□□□□ -0.93
CLN3-238ENST00000569430 PSG8Q9UQ74 426 aa9.25□□□□□ -0.93
CLN3-238ENST00000569430 SMKR1H3BMG3 65 aa9.25□□□□□ -0.93
CLN3-238ENST00000569430 LGALS7P47929 136 aa9.25□□□□□ -0.93
CLN3-238ENST00000569430 SPANXN1Q5VSR9 72 aa9.25□□□□□ -0.93
CLN3-238ENST00000569430 OR5AN1Q8NGI8 311 aa9.25□□□□□ -0.93
CLN3-238ENST00000569430 IGKV1OR2-108A0A075B7D4 117 aa9.24□□□□□ -0.93
CLN3-238ENST00000569430 SPAARA0A1B0GVQ0 90 aa9.24□□□□□ -0.93
CLN3-238ENST00000569430 F2RL2O00254 374 aa9.24□□□□□ -0.93
CLN3-238ENST00000569430 PROP1O75360 226 aa9.24□□□□□ -0.93
CLN3-238ENST00000569430 ESDP10768 282 aa9.24□□□□□ -0.93
CLN3-238ENST00000569430 SAP30O75446 220 aa9.24□□□□□ -0.93
CLN3-238ENST00000569430 LINC00310P59036 64 aa9.24□□□□□ -0.93
CLN3-238ENST00000569430 RPL7P18124 248 aaKnown RBP9.24□□□□□ -0.93
CLN3-238ENST00000569430 EVI2AP22794 236 aa9.24□□□□□ -0.93
CLN3-238ENST00000569430 CFHR2P36980 270 aa9.24□□□□□ -0.93
CLN3-238ENST00000569430 TMPRSS3P57727 454 aa9.24□□□□□ -0.93
CLN3-238ENST00000569430 FER1L6-AS1Q8NA97 138 aa9.24□□□□□ -0.93
CLN3-238ENST00000569430 OR4A5Q8NH83 315 aa9.24□□□□□ -0.93
CLN3-238ENST00000569430 OTORQ9NRC9 128 aa9.24□□□□□ -0.93
CLN3-238ENST00000569430 LINC00312Q9Y6C7 94 aa9.24□□□□□ -0.93
CLN3-238ENST00000569430 IGHV3-49A0A0A0MS15 119 aa9.23□□□□□ -0.93
CLN3-238ENST00000569430 C16orf97H3BN30 126 aa9.23□□□□□ -0.93
CLN3-238ENST00000569430 HBDP02042 147 aa9.23□□□□□ -0.93
CLN3-238ENST00000569430 Q1RN00 199 aa9.23□□□□□ -0.93
CLN3-238ENST00000569430 SAMD5Q5TGI4 173 aa9.23□□□□□ -0.93
CLN3-238ENST00000569430 AMN1Q8IY45 258 aa9.23□□□□□ -0.93
CLN3-238ENST00000569430 BCL6BQ8N143 479 aaPredicted RBP9.23□□□□□ -0.93
CLN3-238ENST00000569430 TM4SF5O14894 197 aa9.23□□□□□ -0.93
CLN3-238ENST00000569430 OR1N2Q8NGR9 330 aa9.23□□□□□ -0.93
CLN3-238ENST00000569430 A0A1B0GWB2 263 aa9.23□□□□□ -0.93
CLN3-238ENST00000569430 NPIPB5A8MRT5 1133 aa9.23□□□□□ -0.93
CLN3-238ENST00000569430 P0C879 139 aa9.23□□□□□ -0.93
CLN3-238ENST00000569430 LOXL3P58215 753 aa9.23□□□□□ -0.93
CLN3-238ENST00000569430 TIMM23BQ5SRD1 257 aa9.23□□□□□ -0.93
CLN3-238ENST00000569430 DSCAML1Q8TD84 2053 aa9.23□□□□□ -0.93
CLN3-238ENST00000569430 IGHV1-46P01743 117 aa9.22□□□□□ -0.93
CLN3-238ENST00000569430 BMI1P35226 326 aa9.22□□□□□ -0.93
CLN3-238ENST00000569430 LEPP41159 167 aa9.22□□□□□ -0.93
CLN3-238ENST00000569430 DLX1P56177 255 aa9.22□□□□□ -0.93
CLN3-238ENST00000569430 F5H697 171 aa9.22□□□□□ -0.93
CLN3-238ENST00000569430 IGKV3-15P01624 115 aa9.22□□□□□ -0.93
CLN3-238ENST00000569430 WT1-ASQ06250 92 aa9.22□□□□□ -0.93
CLN3-238ENST00000569430 HSD52Q0P140 79 aa9.22□□□□□ -0.93
CLN3-238ENST00000569430 LYZL1Q6UWQ5 148 aa9.22□□□□□ -0.93
CLN3-238ENST00000569430 SLC25A48Q6ZT89 311 aaKnown RBP9.22□□□□□ -0.93
CLN3-238ENST00000569430 MTURNQ8N3F0 131 aa9.22□□□□□ -0.93
CLN3-238ENST00000569430 C1orf162Q8NEQ5 155 aaPredicted RBP9.22□□□□□ -0.93
CLN3-238ENST00000569430 IGHV3-66A0A0C4DH42 116 aa9.22□□□□□ -0.93
CLN3-238ENST00000569430 K7EP13 123 aa9.22□□□□□ -0.93
CLN3-238ENST00000569430 KLK10O43240 276 aa9.22□□□□□ -0.93
CLN3-238ENST00000569430 C17orf58Q2M2W7 97 aa9.22□□□□□ -0.93
CLN3-238ENST00000569430 KLF17Q5JT82 389 aaPredicted RBP9.22□□□□□ -0.93
CLN3-238ENST00000569430 UTF1Q5T230 341 aa9.22□□□□□ -0.93
CLN3-238ENST00000569430 GFRALQ6UXV0 394 aa9.22□□□□□ -0.93
CLN3-238ENST00000569430 GTSCR1Q86UQ5 136 aa9.22□□□□□ -0.93
CLN3-238ENST00000569430 ZNF71Q9NQZ8 489 aaPredicted RBP9.22□□□□□ -0.93
CLN3-238ENST00000569430 H0YJW9 148 aa9.21□□□□□ -0.93
CLN3-238ENST00000569430 MGPP08493 103 aa9.21□□□□□ -0.93
CLN3-238ENST00000569430 C8orf46Q8TAG6 207 aa9.21□□□□□ -0.93
CLN3-238ENST00000569430 RABAC1Q9UI14 185 aa9.21□□□□□ -0.93
CLN3-238ENST00000569430 CUL9Q8IWT3 2517 aa9.21□□□□□ -0.93
CLN3-238ENST00000569430 FAM231DQ6ZW35 169 aa9.21□□□□□ -0.94
CLN3-238ENST00000569430 DEFB125Q8N687 156 aa9.21□□□□□ -0.94
CLN3-238ENST00000569430 TIMD4Q96H15 378 aa9.21□□□□□ -0.94
CLN3-238ENST00000569430 A0A1W2PPI3 338 aa9.21□□□□□ -0.94
CLN3-238ENST00000569430 TMEM213A2RRL7 107 aa9.21□□□□□ -0.94
CLN3-238ENST00000569430 H7C2G1 150 aa9.21□□□□□ -0.94
CLN3-238ENST00000569430 TAX1BP3O14907 124 aa9.21□□□□□ -0.94
CLN3-238ENST00000569430 NDUFA3O95167 84 aa9.21□□□□□ -0.94
CLN3-238ENST00000569430 TOMM40O96008 361 aa9.21□□□□□ -0.94
CLN3-238ENST00000569430 PAX1P15863 534 aa9.21□□□□□ -0.94
CLN3-238ENST00000569430 RBX1P62877 108 aa9.21□□□□□ -0.94
CLN3-238ENST00000569430 FAM169BQ8N8A8 192 aa9.21□□□□□ -0.94
CLN3-238ENST00000569430 OR4X2Q8NGF9 303 aa9.21□□□□□ -0.94
CLN3-238ENST00000569430 C10orf142B7Z368 130 aa9.2□□□□□ -0.94
CLN3-238ENST00000569430 TGFAP01135 160 aa9.2□□□□□ -0.94
CLN3-238ENST00000569430 ECSCRQ19T08 205 aa9.2□□□□□ -0.94
CLN3-238ENST00000569430 SPRNQ5BIV9 151 aa9.2□□□□□ -0.94
CLN3-238ENST00000569430 MDS2Q8NDY4 140 aa9.2□□□□□ -0.94
CLN3-238ENST00000569430 SLC25A39Q9BZJ4 359 aaPredicted RBP9.2□□□□□ -0.94
CLN3-238ENST00000569430 SMG1Q96Q15 3661 aaKnown RBP9.2□□□□□ -0.94
CLN3-238ENST00000569430 CPAMD8Q8IZJ3 1885 aa9.2□□□□□ -0.94
CLN3-238ENST00000569430 FNDC10F2Z333 226 aa9.2□□□□□ -0.94
CLN3-238ENST00000569430 CTRLP40313 264 aa9.2□□□□□ -0.94
CLN3-238ENST00000569430 PAX2Q02962 417 aa9.2□□□□□ -0.94
CLN3-238ENST00000569430 DIAPH2-AS1Q14236 149 aa9.2□□□□□ -0.94
CLN3-238ENST00000569430 IGFL4Q6B9Z1 124 aa9.2□□□□□ -0.94
CLN3-238ENST00000569430 SP5Q6BEB4 398 aaPredicted RBP9.2□□□□□ -0.94
CLN3-238ENST00000569430 PPP1R27Q86WC6 154 aa9.2□□□□□ -0.94
CLN3-238ENST00000569430 TTC9CQ8N5M4 171 aa9.2□□□□□ -0.94
CLN3-238ENST00000569430 FXYD5Q96DB9 178 aa9.2□□□□□ -0.94
CLN3-238ENST00000569430 ADGRG4Q8IZF6 3080 aa9.2□□□□□ -0.94
CLN3-238ENST00000569430 C19orf67A6NJJ6 358 aa9.2□□□□□ -0.94
CLN3-238ENST00000569430 GOSR1O95249 250 aa9.2□□□□□ -0.94
CLN3-238ENST00000569430 PSMB2P49721 201 aa9.2□□□□□ -0.94
CLN3-238ENST00000569430 C1orf185Q5T7R7 199 aa9.2□□□□□ -0.94
CLN3-238ENST00000569430 Q8TAT8 98 aa9.2□□□□□ -0.94
CLN3-238ENST00000569430 TMEM167AQ8TBQ9 72 aa9.2□□□□□ -0.94
CLN3-238ENST00000569430 ZNF418Q8TF45 676 aaPredicted RBP9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 62 ms